CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133826

Assay name Walters_A-05-Kruger-WH2_REP2

GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
220.0 100.0 141.3 At2g27420 817287 cysteine proteinase, putative F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
89.2 99.9 245.7 At4g01080 827902 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
70.1 99.9 53.1 At5g55570 835651 unknown protein F:unknown;P:unknown;C:chloroplast;PM O.I. C.G. H.G.
59.4 99.8 176.1 At3g48460 824005 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
54.9 99.8 179.7 At1g64780 842786 ATAMT1 encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root. O.I. C.G. H.G.
54.6 99.8 34.5 At1g65870 842898 disease resistance-responsive family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P O.I. C.G. H.G.
50.3 99.8 31.1 At1g52770 841710 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
48.6 99.8 32.8 At3g58070 824976 GIS (GLABROUS INFLORESCENCE STEMS) Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems. O.I. C.G. H.G.
36.1 99.7 176.1 At1g02820 839304 late embryogenesis abundant 3 family protein / LEA3 family protein F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P O.I. C.G. H.G.
30.2 99.7 75.6 At4g16590 827360 ATCSLA01 encodes a gene similar to cellulose synthase O.I. C.G. H.G.
28.0 99.7 244.6 At2g40100 818599 LHCB4.3 (light harvesting complex PSII) Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II O.I. C.G. H.G.
26.6 99.7 208.0 At1g32900 840184 starch synthase, putative F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM O.I. C.G. H.G.
25.5 99.7 46.0 At5g58310 835943 MES18 (METHYL ESTERASE 18) Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
25.2 99.6 62.0 At1g60590 842353 polygalacturonase, putative / pectinase, putative F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA O.I. C.G. H.G.
24.0 99.6 13.8 At5g11590 831031 TINY2 (TINY2) encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
23.6 99.6 18.8 At3g17640 821031 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:unknown;PMOBFA O.I. C.G. H.G.
19.9 99.6 26.5 At1g60230 842318 radical SAM domain-containing protein F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA O.I. C.G. H.G.
19.5 99.6 46.7 At5g54250 835513 ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4) member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent. O.I. C.G. H.G.
19.1 99.6 57.8 At2g40400 818633 unknown protein F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM O.I. C.G. H.G.
18.7 99.5 32.2 At1g73870 843723 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
17.3 99.5 17.1 At3g14395 820661 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.2 99.5 188.1 At3g21670 821721 nitrate transporter (NTP3) F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
17.2 99.5 115.4 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV O.I. C.G. H.G.
17.0 99.5 66.1 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
16.9 99.5 168.4 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
16.9 99.5 65.5 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
16.6 99.5 44.0 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. O.I. C.G. H.G.
15.6 99.5 76.3 At3g59780 825147 - F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV O.I. C.G. H.G.
15.5 99.5 182.0 At5g51720 835246 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO O.I. C.G. H.G.
15.5 99.5 57.9 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
15.0 99.4 77.3 At1g20190 838608 ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
15.0 99.4 37.1 At1g79520 844290 cation efflux family protein F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM O.I. C.G. H.G.
14.7 99.4 5.2 At5g46830 834727 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO O.I. C.G. H.G.
14.5 99.4 85.5 At1g62780 842577 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAF O.I. C.G. H.G.
14.1 99.4 79.4 At2g36145 818187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P O.I. C.G. H.G.
13.8 99.4 37.1 At5g64050 836526 ERS (GLUTAMATE TRNA SYNTHETASE) Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana. O.I. C.G. H.G.
13.6 99.4 109.2 At5g15950 831452 adenosylmethionine decarboxylase family protein F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
13.6 99.4 49.4 At1g50730 841495 unknown protein F:unknown;P:unknown;C:unknown;MOPF O.I. C.G. H.G.
13.5 99.4 117.4 At1g72030 843534 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO O.I. C.G. H.G.
13.3 99.4 78.2 At1g07180 837229 NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1) Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane. O.I. C.G. H.G.
13.2 99.4 171.8 At5g35970 833589 DNA-binding protein, putative F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA O.I. C.G. H.G.
13.2 99.4 37.7 At3g05030 819665 NHX2 (SODIUM HYDROGEN EXCHANGER 2) member of Sodium proton exchanger family O.I. C.G. H.G.
13.0 99.4 45.4 At4g23290 828428 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA O.I. C.G. H.G.
12.9 99.3 53.8 At5g48220 834875 indole-3-glycerol phosphate synthase, putative F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP O.I. C.G. H.G.
12.8 99.3 16.2 At5g17600 831626 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
12.4 99.3 163.3 At5g66530 836785 aldose 1-epimerase family protein F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFM O.I. C.G. H.G.
12.4 99.3 32.7 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
12.2 99.3 50.6 At3g52720 824438 ACA1 (ALPHA CARBONIC ANHYDRASE 1) F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF O.I. C.G. H.G.
12.1 99.3 109.4 At2g36870 818259 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA O.I. C.G. H.G.
12.1 99.3 20.0 At5g53200 835401 TRY (TRIPTYCHON) F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM O.I. C.G. H.G.
11.7 99.3 203.2 At1g17100 838280 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA O.I. C.G. H.G.
11.6 99.3 29.4 At5g20140 832136 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA O.I. C.G. H.G.
11.4 99.3 90.4 At1g04420 839524 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMFPA O.I. C.G. H.G.
11.3 99.3 11.9 At3g30460 822758 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
11.2 99.2 81.2 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
11.2 99.2 20.2 At3g63510 825526 FAD binding / catalytic/ tRNA dihydrouridine synthase F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
11.1 99.2 48.4 At1g06690 837179 aldo/keto reductase family protein F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA O.I. C.G. H.G.
11.0 99.2 83.6 At3g01060 821278 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP O.I. C.G. H.G.
10.8 99.2 41.6 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
10.8 99.2 38.5 At4g12830 826895 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
10.8 99.2 30.0 At5g62140 836334 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO O.I. C.G. H.G.
10.7 99.2 41.3 At5g21100 832234 L-ascorbate oxidase, putative F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA O.I. C.G. H.G.
10.4 99.2 29.6 At1g23205 838929 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
10.3 99.2 107.4 At5g58870 836004 ftsh9 (FtsH protease 9) encodes an FtsH protease that is localized to the chloroplast O.I. C.G. H.G.
10.3 99.2 46.5 At1g56050 842056 GTP-binding protein-related F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP O.I. C.G. H.G.
10.3 99.2 44.3 At2g23340 816866 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10. O.I. C.G. H.G.
10.3 99.2 41.6 At5g54130 835500 - - O.I. C.G. H.G.
10.3 99.2 19.7 At2g32640 817824 unknown protein F:unknown;P:unknown;C:chloroplast;BPO O.I. C.G. H.G.
10.3 99.2 11.0 At1g05900 837100 endonuclease-related F:sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFP O.I. C.G. H.G.
10.1 99.2 49.4 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.0 99.2 150.2 At1g19450 838529 integral membrane protein, putative / sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, vacuole, membrane;BMFPOAV O.I. C.G. H.G.
10.0 99.2 91.1 At5g67370 836872 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP O.I. C.G. H.G.
10.0 99.2 37.1 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.0 99.2 27.8 At3g44430 823568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
9.9 99.1 63.5 At5g42070 834212 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO O.I. C.G. H.G.
9.9 99.1 32.3 At2g41040 818703 methyltransferase-related F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM O.I. C.G. H.G.
9.8 99.1 229.1 At4g26850 828792 VTC2 (vitamin c defective 2) Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light. O.I. C.G. H.G.
9.6 99.1 30.2 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
9.6 99.1 27.8 At5g62960 836416 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
9.5 99.1 68.5 At2g21280 816667 SULA A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system. O.I. C.G. H.G.
9.5 99.1 38.5 At4g29590 829080 methyltransferase F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF O.I. C.G. H.G.
9.5 99.1 28.2 At5g50100 835074 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM O.I. C.G. H.G.
9.4 99.1 49.8 At3g15110 820741 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO O.I. C.G. H.G.
9.4 99.1 34.0 At2g33530 817918 scpl46 (serine carboxypeptidase-like 46) F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB O.I. C.G. H.G.
9.4 99.1 19.0 At5g20220 832144 zinc knuckle (CCHC-type) family protein F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB O.I. C.G. H.G.
9.3 99.1 28.0 At3g21890 821744 zinc finger (B-box type) family protein F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO O.I. C.G. H.G.
9.3 99.1 13.2 At4g35290 829682 GLUR2 (GLUTAMATE RECEPTOR 2) Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
9.3 99.1 13.1 At2g46735 819286 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.2 99.1 164.0 At1g55480 841995 binding / protein binding F:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMF O.I. C.G. H.G.
9.2 99.1 23.0 At3g03770 821164 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
9.1 99.1 206.3 At1g32080 840100 membrane protein, putative F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, membrane, chloroplast envelope;BOFPA O.I. C.G. H.G.
9.1 99.1 51.5 At1g70580 843395 AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2) Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1 O.I. C.G. H.G.
9.1 99.1 29.2 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM O.I. C.G. H.G.
9.1 99.1 17.6 At1g60270 3767579 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
9.1 99.1 7.7 At1g05550 837057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 159.5 At3g48730 824034 GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2) F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPV O.I. C.G. H.G.
9.0 99.1 69.8 At4g11175 826719 translation initiation factor IF-1, chloroplast, putative F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP O.I. C.G. H.G.
9.0 99.1 30.4 At3g15570 820797 phototropic-responsive NPH3 family protein F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
9.0 99.1 23.4 At2g41120 818711 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
9.0 99.1 21.0 At3g20270 821571 lipid-binding serum glycoprotein family protein F:lipid binding;P:biological_process unknown;C:unknown;MPOA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
220.0	100.0	141.3	At2g27420	817287	cysteine proteinase, putative	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
89.2	99.9	245.7	At4g01080	827902	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
70.1	99.9	53.1	At5g55570	835651	unknown protein	F:unknown;P:unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
59.4	99.8	176.1	At3g48460	824005	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
54.9	99.8	179.7	At1g64780	842786	ATAMT1	encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.	O.I.	C.G.	H.G.
54.6	99.8	34.5	At1g65870	842898	disease resistance-responsive family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;P	O.I.	C.G.	H.G.
50.3	99.8	31.1	At1g52770	841710	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.6	99.8	32.8	At3g58070	824976	GIS (GLABROUS INFLORESCENCE STEMS)	Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenile�adult leaf transition and inducing the formation of rosette leaves on inflorescence stems.	O.I.	C.G.	H.G.
36.1	99.7	176.1	At1g02820	839304	late embryogenesis abundant 3 family protein / LEA3 family protein	F:molecular_function unknown;P:embryonic development, response to stress;C:unknown;P	O.I.	C.G.	H.G.
30.2	99.7	75.6	At4g16590	827360	ATCSLA01	encodes a gene similar to cellulose synthase	O.I.	C.G.	H.G.
28.0	99.7	244.6	At2g40100	818599	LHCB4.3 (light harvesting complex PSII)	Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem II	O.I.	C.G.	H.G.
26.6	99.7	208.0	At1g32900	840184	starch synthase, putative	F:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFM	O.I.	C.G.	H.G.
25.5	99.7	46.0	At5g58310	835943	MES18 (METHYL ESTERASE 18)	Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
25.2	99.6	62.0	At1g60590	842353	polygalacturonase, putative / pectinase, putative	F:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVA	O.I.	C.G.	H.G.
24.0	99.6	13.8	At5g11590	831031	TINY2 (TINY2)	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
23.6	99.6	18.8	At3g17640	821031	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:unknown;PMOBFA	O.I.	C.G.	H.G.
19.9	99.6	26.5	At1g60230	842318	radical SAM domain-containing protein	F:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVA	O.I.	C.G.	H.G.
19.5	99.6	46.7	At5g54250	835513	ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)	member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.	O.I.	C.G.	H.G.
19.1	99.6	57.8	At2g40400	818633	unknown protein	F:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOM	O.I.	C.G.	H.G.
18.7	99.5	32.2	At1g73870	843723	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
17.3	99.5	17.1	At3g14395	820661	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.2	99.5	188.1	At3g21670	821721	nitrate transporter (NTP3)	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
17.2	99.5	115.4	At3g24190	822005	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV	O.I.	C.G.	H.G.
17.0	99.5	66.1	At1g17050	838275	SPS2 (Solanesyl diphosphate synthase 2)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
16.9	99.5	168.4	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
16.9	99.5	65.5	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
16.6	99.5	44.0	At1g78510	844187	SPS1 (solanesyl diphosphate synthase 1)	Encodes a protein with solanesyl diphosphate synthase activity.	O.I.	C.G.	H.G.
15.6	99.5	76.3	At3g59780	825147	-	F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPV	O.I.	C.G.	H.G.
15.5	99.5	182.0	At5g51720	835246	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPO	O.I.	C.G.	H.G.
15.5	99.5	57.9	At5g52570	835334	BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)	Converts β-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
15.0	99.4	77.3	At1g20190	838608	ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
15.0	99.4	37.1	At1g79520	844290	cation efflux family protein	F:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAM	O.I.	C.G.	H.G.
14.7	99.4	5.2	At5g46830	834727	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMO	O.I.	C.G.	H.G.
14.5	99.4	85.5	At1g62780	842577	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAF	O.I.	C.G.	H.G.
14.1	99.4	79.4	At2g36145	818187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;P	O.I.	C.G.	H.G.
13.8	99.4	37.1	At5g64050	836526	ERS (GLUTAMATE TRNA SYNTHETASE)	Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.	O.I.	C.G.	H.G.
13.6	99.4	109.2	At5g15950	831452	adenosylmethionine decarboxylase family protein	F:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
13.6	99.4	49.4	At1g50730	841495	unknown protein	F:unknown;P:unknown;C:unknown;MOPF	O.I.	C.G.	H.G.
13.5	99.4	117.4	At1g72030	843534	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:unknown;PBO	O.I.	C.G.	H.G.
13.3	99.4	78.2	At1g07180	837229	NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)	Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.	O.I.	C.G.	H.G.
13.2	99.4	171.8	At5g35970	833589	DNA-binding protein, putative	F:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPA	O.I.	C.G.	H.G.
13.2	99.4	37.7	At3g05030	819665	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	member of Sodium proton exchanger family	O.I.	C.G.	H.G.
13.0	99.4	45.4	At4g23290	828428	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVA	O.I.	C.G.	H.G.
12.9	99.3	53.8	At5g48220	834875	indole-3-glycerol phosphate synthase, putative	F:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFP	O.I.	C.G.	H.G.
12.8	99.3	16.2	At5g17600	831626	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
12.4	99.3	163.3	At5g66530	836785	aldose 1-epimerase family protein	F:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFM	O.I.	C.G.	H.G.
12.4	99.3	32.7	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
12.2	99.3	50.6	At3g52720	824438	ACA1 (ALPHA CARBONIC ANHYDRASE 1)	F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOF	O.I.	C.G.	H.G.
12.1	99.3	109.4	At2g36870	818259	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOA	O.I.	C.G.	H.G.
12.1	99.3	20.0	At5g53200	835401	TRY (TRIPTYCHON)	F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
11.7	99.3	203.2	At1g17100	838280	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBA	O.I.	C.G.	H.G.
11.6	99.3	29.4	At5g20140	832136	SOUL heme-binding family protein	F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA	O.I.	C.G.	H.G.
11.4	99.3	90.4	At1g04420	839524	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:chloroplast, chloroplast stroma, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
11.3	99.3	11.9	At3g30460	822758	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
11.2	99.2	81.2	At4g10120	826603	ATSPS4F	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
11.2	99.2	20.2	At3g63510	825526	FAD binding / catalytic/ tRNA dihydrouridine synthase	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:regulation of nitrogen utilization, tRNA processing, oxidation reduction, metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
11.1	99.2	48.4	At1g06690	837179	aldo/keto reductase family protein	F:oxidoreductase activity, aldo-keto reductase activity, ATPase activity, ATP binding;P:oxidation reduction;C:chloroplast thylakoid membrane, chloroplast, plastoglobule, chloroplast envelope;BOMFPA	O.I.	C.G.	H.G.
11.0	99.2	83.6	At3g01060	821278	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;BOFP	O.I.	C.G.	H.G.
10.8	99.2	41.6	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
10.8	99.2	38.5	At4g12830	826895	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
10.8	99.2	30.0	At5g62140	836334	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.7	99.2	41.3	At5g21100	832234	L-ascorbate oxidase, putative	F:oxidoreductase activity, copper ion binding, L-ascorbate oxidase activity;P:oxidation reduction;C:plant-type cell wall;BFPMOA	O.I.	C.G.	H.G.
10.4	99.2	29.6	At1g23205	838929	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
10.3	99.2	107.4	At5g58870	836004	ftsh9 (FtsH protease 9)	encodes an FtsH protease that is localized to the chloroplast	O.I.	C.G.	H.G.
10.3	99.2	46.5	At1g56050	842056	GTP-binding protein-related	F:GTP binding;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBMFAP	O.I.	C.G.	H.G.
10.3	99.2	44.3	At2g23340	816866	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
10.3	99.2	41.6	At5g54130	835500	-	-	O.I.	C.G.	H.G.
10.3	99.2	19.7	At2g32640	817824	unknown protein	F:unknown;P:unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
10.3	99.2	11.0	At1g05900	837100	endonuclease-related	F:sequence-specific DNA binding, DNA binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:intracellular;BOAMFP	O.I.	C.G.	H.G.
10.1	99.2	49.4	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.0	99.2	150.2	At1g19450	838529	integral membrane protein, putative / sugar transporter family protein	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, vacuole, membrane;BMFPOAV	O.I.	C.G.	H.G.
10.0	99.2	91.1	At5g67370	836872	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OBP	O.I.	C.G.	H.G.
10.0	99.2	37.1	At4g24700	828572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.0	99.2	27.8	At3g44430	823568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
9.9	99.1	63.5	At5g42070	834212	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PO	O.I.	C.G.	H.G.
9.9	99.1	32.3	At2g41040	818703	methyltransferase-related	F:methyltransferase activity;P:metabolic process;C:chloroplast, plastoglobule;BOAPFM	O.I.	C.G.	H.G.
9.8	99.1	229.1	At4g26850	828792	VTC2 (vitamin c defective 2)	Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.	O.I.	C.G.	H.G.
9.6	99.1	30.2	At5g19850	832105	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
9.6	99.1	27.8	At5g62960	836416	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
9.5	99.1	68.5	At2g21280	816667	SULA	A nuclear-encoded, plastid-targeted protein (AtSulA) whose overexpression causes severe yet stochastic plastid (shown in chloroplasts and leucoplasts) division defects. The protein does not appear to interact with either AtFtsZ proteins when studied in a yeast two-hybrid system.	O.I.	C.G.	H.G.
9.5	99.1	38.5	At4g29590	829080	methyltransferase	F:methyltransferase activity;P:metabolic process;C:chloroplast;BOPAF	O.I.	C.G.	H.G.
9.5	99.1	28.2	At5g50100	835074	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OBPM	O.I.	C.G.	H.G.
9.4	99.1	49.8	At3g15110	820741	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;BPO	O.I.	C.G.	H.G.
9.4	99.1	34.0	At2g33530	817918	scpl46 (serine carboxypeptidase-like 46)	F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOB	O.I.	C.G.	H.G.
9.4	99.1	19.0	At5g20220	832144	zinc knuckle (CCHC-type) family protein	F:unfolded protein binding, heat shock protein binding, zinc ion binding, nucleic acid binding;P:protein folding;C:unknown;VMFOPB	O.I.	C.G.	H.G.
9.3	99.1	28.0	At3g21890	821744	zinc finger (B-box type) family protein	F:transcription factor activity, zinc ion binding;P:response to UV-B, regulation of transcription;C:intracellular;PO	O.I.	C.G.	H.G.
9.3	99.1	13.2	At4g35290	829682	GLUR2 (GLUTAMATE RECEPTOR 2)	Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
9.3	99.1	13.1	At2g46735	819286	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.2	99.1	164.0	At1g55480	841995	binding / protein binding	F:protein binding, binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope;PBOMF	O.I.	C.G.	H.G.
9.2	99.1	23.0	At3g03770	821164	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
9.1	99.1	206.3	At1g32080	840100	membrane protein, putative	F:unknown;P:unknown;C:chloroplast, chloroplast inner membrane, membrane, chloroplast envelope;BOFPA	O.I.	C.G.	H.G.
9.1	99.1	51.5	At1g70580	843395	AOAT2 (ALANINE-2-OXOGLUTARATE AMINOTRANSFERASE 2)	Similar to glutamate-glyoxylate transaminase enzyme encoded by AOAT1	O.I.	C.G.	H.G.
9.1	99.1	29.2	At1g76570	843990	chlorophyll A-B binding family protein	F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM	O.I.	C.G.	H.G.
9.1	99.1	17.6	At1g60270	3767579	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
9.1	99.1	7.7	At1g05550	837057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	159.5	At3g48730	824034	GSA2 (glutamate-1-semialdehyde 2,1-aminomutase 2)	F:glutamate-1-semialdehyde 2,1-aminomutase activity, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:porphyrin biosynthetic process;C:chloroplast stroma, chloroplast, chloroplast envelope;BOFMAPV	O.I.	C.G.	H.G.
9.0	99.1	69.8	At4g11175	826719	translation initiation factor IF-1, chloroplast, putative	F:RNA binding, translation initiation factor activity;P:translational initiation;C:chloroplast;BOP	O.I.	C.G.	H.G.
9.0	99.1	30.4	At3g15570	820797	phototropic-responsive NPH3 family protein	F:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.0	99.1	23.4	At2g41120	818711	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
9.0	99.1	21.0	At3g20270	821571	lipid-binding serum glycoprotein family protein	F:lipid binding;P:biological_process unknown;C:unknown;MPOA	O.I.	C.G.	H.G.

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GSM ID	GSM133826
Assay name	Walters_A-05-Kruger-WH2_REP2
GSE experiment	GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Microarray experiments to specifically-expressed genes

GSM ID GSM133826 Assay name Walters_A-05-Kruger-WH2_REP2 GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

GSM ID GSM133826

Assay name Walters_A-05-Kruger-WH2_REP2

GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant