Microarray experiments to specifically-expressed genes

GSM ID GSM133823
Assay name Walters_A-02-Kruger-WL2_REP2
GSE experiment GSE5737: Carbohydrate- and redox-regulation of gene expression in a TPT mutant

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
123.399.9105.8At2g27420817287cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPBVAFO.I.C.G.H.G.
54.099.834.3At1g65870842898disease resistance-responsive family proteinF:molecular_function unknown;P:lignan biosynthetic process, defense response;C:cell wall;PO.I.C.G.H.G.
50.899.845.2At5g55570835651unknown proteinF:unknown;P:unknown;C:chloroplast;PMO.I.C.G.H.G.
48.699.8181.3At4g01080827902unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
47.899.8157.9At3g48460824005GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
44.099.8160.8At1g64780842786ATAMT1encodes an ammonium transporter protein believed to act as a high affinity transporter. It is expressed in the root, primarily in endodermal and cortical cells, and contributes to ammonium uptake in the root.O.I.C.G.H.G.
36.899.728.5At3g58070824976GIS (GLABROUS INFLORESCENCE STEMS)Putative transcription factor, contains C2H2 domain, regulates aspects of shoot maturation in Arabidopsis thaliana. GIS loss-of-function mutations affect the epidermal differentiation of inflorescence organs, causing a premature decrease in trichome production on successive leaves, stem internodes, and branches. Overexpression has the opposite effect on trichome initiation and causes other heterochronic phenotypes, affecting flowering and juvenileľadult leaf transition and inducing the formation of rosette leaves on inflorescence stems.O.I.C.G.H.G.
34.799.7172.6At1g02820839304late embryogenesis abundant 3 family protein / LEA3 family proteinF:molecular_function unknown;P:embryonic development, response to stress;C:unknown;PO.I.C.G.H.G.
26.899.7208.6At1g32900840184starch synthase, putativeF:transferase activity, transferring glycosyl groups;P:biosynthetic process, glucan biosynthetic process;C:chloroplast;PBOAFMO.I.C.G.H.G.
22.499.613.3At5g11590831031TINY2 (TINY2)encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
20.199.655.3At1g60590842353polygalacturonase, putative / pectinase, putativeF:polygalacturonase activity;P:carbohydrate metabolic process;C:unknown;FPBMOVAO.I.C.G.H.G.
19.699.688.5At1g20190838608ATEXPA11 (ARABIDOPSIS THALIANA EXPANSIN 11)member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
18.499.5194.8At3g21670821721nitrate transporter (NTP3)F:transporter activity;P:oligopeptide transport;C:membrane;BPMOFO.I.C.G.H.G.
17.299.516.0At3g17640821031leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:unknown;PMOBFAO.I.C.G.H.G.
17.099.530.7At1g73870843723zinc finger (B-box type) family proteinF:transcription factor activity, zinc ion binding;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
16.899.543.3At5g54250835513ATCNGC4 (CYCLIC NUCLEOTIDE-GATED CATION CHANNEL 4)member of Cyclic nucleotide gated channel family, downstream component of the signaling pathways leading to HR resistance. mutant plants exhibit gene-for-gene disease resistance against avirulent Pseudomonas syringae despite the near-complete absence of the hypersensitive response (HR). Salicylic acid accumulation in dnd2 mutants is completely PAD4-independent.O.I.C.G.H.G.
16.599.517.8At5g40380834036protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
16.199.5185.3At2g40100818599LHCB4.3 (light harvesting complex PSII)Lhcb4:3 protein (Lhcb4.3, light harvesting complex of photosystem IIO.I.C.G.H.G.
16.199.517.6At1g52770841710phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
15.499.551.9At2g40400818633unknown proteinF:unknown;P:unknown;C:chloroplast thylakoid lumen;PBOMO.I.C.G.H.G.
15.399.435.5At5g58310835943MES18 (METHYL ESTERASE 18)Encodes a protein shown to have methyl IAA esterase activity in vitro. This protein does not act on methyl JA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
15.099.429.0At3g56080824774dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
14.099.434.0At5g62140836334unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
13.799.422.0At1g60230842318radical SAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity, RNA methyltransferase activity;P:rRNA processing;C:cytoplasm;BOPVAO.I.C.G.H.G.
13.699.416.0At4g35290829682GLUR2 (GLUTAMATE RECEPTOR 2)Encodes a putative glutamate receptor like-protein, member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
13.599.4173.3At5g35970833589DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast, chloroplast envelope;BMOFPAO.I.C.G.H.G.
13.599.437.2At3g15570820797phototropic-responsive NPH3 family proteinF:signal transducer activity;P:response to light stimulus;C:cellular_component unknown;PO.I.C.G.H.G.
13.599.436.7At5g64050836526ERS (GLUTAMATE TRNA SYNTHETASE)Glutamate-tRNA ligase. Targeted to mitochondria and chloroplast. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.O.I.C.G.H.G.
13.499.453.0At3g52720824438ACA1 (ALPHA CARBONIC ANHYDRASE 1)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFO.I.C.G.H.G.
13.499.446.2At4g23290828428protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:mitochondrion;MPOBFVAO.I.C.G.H.G.
13.199.4115.3At1g72030843534GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:unknown;PBOO.I.C.G.H.G.
13.199.437.5At3g05030819665NHX2 (SODIUM HYDROGEN EXCHANGER 2)member of Sodium proton exchanger familyO.I.C.G.H.G.
13.099.477.5At1g07180837229NDA1 (ALTERNATIVE NAD(P)H DEHYDROGENASE 1)Internal NAD(P)H dehydrogenase in mitochondria. The predicted protein sequence has high homology with other designated NAD(P)H DHs from microorganisms; the capacity for matrix NAD(P)H oxidation via the rotenone-insensitive pathway is significantly reduced in the Atndi1 mutant plant line; the in vitro translation product of AtNDI1 is imported into isolated mitochondria and located on the inside of the inner membrane.O.I.C.G.H.G.
12.999.357.7At1g17050838275SPS2 (Solanesyl diphosphate synthase 2)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
12.899.355.6At1g20070838596unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
12.599.333.9At1g79520844290cation efflux family proteinF:cation transmembrane transporter activity;P:cation transport;C:plasma membrane, membrane;BFOPAMO.I.C.G.H.G.
12.499.374.1At2g15560816049-F:unknown;P:response to oxidative stress;C:cellular_component unknown;PMFBOO.I.C.G.H.G.
12.299.351.4At5g52570835334BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)Converts β-carotene to zeaxanthin via cryptoxanthin.O.I.C.G.H.G.
12.199.320.0At5g53200835401TRY (TRIPTYCHON)F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POMO.I.C.G.H.G.
12.199.315.8At5g17600831626zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
11.799.395.2At3g24190822005ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAVO.I.C.G.H.G.
11.699.352.4At3g01550821114PPT2 (PHOSPHOENOLPYRUVATE (PEP)/PHOSPHATE TRANSLOCATOR 2)F:antiporter activity, triose-phosphate transmembrane transporter activity;P:triose phosphate transport, transport;C:integral to membrane, chloroplast, membrane;PMFOBAO.I.C.G.H.G.
11.599.376.3At1g62780842577unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;PMOBAFO.I.C.G.H.G.
11.599.346.8At3g02830821230ZFN1 (ZINC FINGER PROTEIN 1)Encodes a zinc finger protein.O.I.C.G.H.G.
11.599.336.7At1g78510844187SPS1 (solanesyl diphosphate synthase 1)Encodes a protein with solanesyl diphosphate synthase activity.O.I.C.G.H.G.
11.499.3138.4At3g56290824796unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.499.381.9At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.O.I.C.G.H.G.
11.099.249.8At5g48220834875indole-3-glycerol phosphate synthase, putativeF:indole-3-glycerol-phosphate synthase activity, catalytic activity;P:metabolic process, tryptophan metabolic process;C:chloroplast, chloroplast stroma;BOAFPO.I.C.G.H.G.
10.999.2241.0At4g26850828792VTC2 (vitamin c defective 2)Encodes a novel protein involved in ascorbate biosynthesis, which was shown to catalyze the transfer of GMP from GDP-galactose to a variety of hexose-1-phosphate acceptors. Recessive mutation has a reduced amount of vitamin C, lower level of non-photochemical quenching, and reduced rate of conversion of violaxanthin to zeaxanthin in high light.O.I.C.G.H.G.
10.899.297.2At5g15950831452adenosylmethionine decarboxylase family proteinF:adenosylmethionine decarboxylase activity;P:spermidine biosynthetic process, spermine biosynthetic process, polyamine biosynthetic process;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
10.799.2104.6At2g04039814937unknown proteinF:molecular_function unknown;P:unknown;C:chloroplast;BOPO.I.C.G.H.G.
10.699.2102.7At2g36870818259xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOAO.I.C.G.H.G.
10.699.263.0At3g59780825147-F:molecular_function unknown;P:biological_process unknown;C:nucleus, chloroplast;OBMFPVO.I.C.G.H.G.
10.399.281.3At5g17710831638EMB1241 (embryo defective 1241)F:protein binding, chaperone binding, protein homodimerization activity, adenyl-nucleotide exchange factor activity;P:embryonic development ending in seed dormancy, protein folding;C:thylakoid, chloroplast, chloroplast stroma;BOMFPAVO.I.C.G.H.G.
10.399.267.9At2g36145818187unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast stroma, chloroplast;PO.I.C.G.H.G.
10.399.256.2At1g15550838125GA3OX1 (GIBBERELLIN 3-OXIDASE 1)Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).O.I.C.G.H.G.
10.399.234.5At2g44940819103AP2 domain-containing transcription factor TINY, putativeencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
10.399.212.6At5g41900834195hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
10.299.2148.2At5g66530836785aldose 1-epimerase family proteinF:carbohydrate binding, isomerase activity, aldose 1-epimerase activity, catalytic activity;P:galactose metabolic process, carbohydrate metabolic process;C:apoplast, chloroplast, chloroplast stroma;BOPFMO.I.C.G.H.G.
10.299.227.5At5g20140832136SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMAO.I.C.G.H.G.
10.099.235.1At2g33530817918scpl46 (serine carboxypeptidase-like 46)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
9.999.142.0At1g50730841495unknown proteinF:unknown;P:unknown;C:unknown;MOPFO.I.C.G.H.G.
9.899.1144.3At5g51720835246unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPOO.I.C.G.H.G.
9.799.178.5At3g01060821278unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;BOFPO.I.C.G.H.G.
9.799.174.3At2g46830819296CCA1 (CIRCADIAN CLOCK ASSOCIATED 1)Encodes a transcriptional repressor that performs overlapping functions with LHY in a regulatory feedback loop that is closely associated with the circadian oscillator of Arabidopsis. Binds to the evening element in the promoter of TOC1 and represses TOC1 transcription. CCA1 and LHY colocalize in the nucleus and form heterodimers in vivo. CCA1 and LHY function synergistically in regulating circadian rhythms of Arabidopsis.O.I.C.G.H.G.
9.599.1183.5At1g17100838280SOUL heme-binding family proteinF:binding;P:biological_process unknown;C:plasma membrane, vacuole;OMPBAO.I.C.G.H.G.
9.599.157.8At3g27050822323unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
9.499.1102.5At5g58870836004ftsh9 (FtsH protease 9)encodes an FtsH protease that is localized to the chloroplastO.I.C.G.H.G.
9.399.1151.0At5g43850834407ARD4F:acireductone dioxygenase [iron(II)-requiring] activity, metal ion binding;P:methionine salvage;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
9.299.140.2At2g36630818235unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system, integral to membrane;BOPAO.I.C.G.H.G.
9.299.128.1At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
9.299.123.3At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).O.I.C.G.H.G.
9.199.140.3At1g18360838417hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOPMFVAO.I.C.G.H.G.
9.199.135.3At4g12830826895hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
9.199.132.9At1g70610843398ATTAP1member of TAP subfamilyO.I.C.G.H.G.
9.099.1133.2At1g18730838455NDF6 (NDH DEPENDENT FLOW 6)likely a subunit of the chloroplast NAD(P)H dehydrogenase complex, involved in PSI cyclic electron transport. Located on the thylakoid membrane. Mutant has impaired NAD(P)H dehydrogenase activity.O.I.C.G.H.G.
8.999.0160.0At5g64840836607ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5)member of GCN subfamilyO.I.C.G.H.G.
8.999.029.2At3g48720824033transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
8.899.0177.7At4g39800830139MIPS1 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 1)** Referred to as MIPS2 in Mitsuhashi et al 2008. myo-inositol-1-phosphate synthase isoform 1.Expressed in leaf, root and silique. Immunolocaliazation experiments with an antibody recognizing MIPS1, MIPS2, and MIPS3 showed endosperm localization.O.I.C.G.H.G.
8.699.029.1At1g32520840146unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOO.I.C.G.H.G.



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