CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133820

Assay name Yang_1-5_young-pod_Rep3_ATH1

GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
392.2 100.0 67.3 At2g32370 817798 HDG3 (HOMEODOMAIN GLABROUS 3) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. O.I. C.G. H.G.
381.5 100.0 161.0 At5g38180 833798 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
324.5 100.0 441.1 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. O.I. C.G. H.G.
320.0 100.0 318.6 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
308.5 100.0 503.9 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV O.I. C.G. H.G.
234.9 100.0 72.2 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
215.2 100.0 332.7 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. O.I. C.G. H.G.
208.8 100.0 76.8 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
199.3 100.0 78.7 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
174.1 100.0 503.4 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
168.4 100.0 306.3 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
163.4 99.9 40.5 At3g02500 821065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
161.5 99.9 107.7 At2g21220 816659 auxin-responsive protein, putative F:calmodulin binding;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
143.2 99.9 118.0 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter O.I. C.G. H.G.
133.7 99.9 37.2 At1g63910 842694 AtMYB103 (myb domain protein 103) member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
133.3 99.9 66.3 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
128.3 99.9 340.1 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
128.2 99.9 61.0 At1g43640 840948 AtTLP5 (TUBBY LIKE PROTEIN 5) Member of TLP family O.I. C.G. H.G.
121.0 99.9 28.8 At5g39130 833906 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
117.5 99.9 106.1 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
114.2 99.9 66.0 At4g24260 828527 ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3) Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia. O.I. C.G. H.G.
104.6 99.9 78.5 At5g39220 833918 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPAF O.I. C.G. H.G.
103.5 99.9 111.7 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. O.I. C.G. H.G.
102.6 99.9 73.5 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
96.3 99.9 36.9 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
95.4 99.9 648.2 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
95.4 99.9 28.7 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
94.4 99.9 26.0 At5g46040 834645 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF O.I. C.G. H.G.
90.3 99.9 28.9 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. O.I. C.G. H.G.
86.0 99.9 12.9 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
83.8 99.9 89.3 At2g21430 816682 cysteine proteinase A494, putative / thiol protease, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
82.9 99.9 67.8 At3g60900 825261 FLA10 F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA O.I. C.G. H.G.
81.0 99.9 309.3 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
80.9 99.9 78.9 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO O.I. C.G. H.G.
79.7 99.9 145.9 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
76.5 99.9 99.6 At5g51950 835270 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA O.I. C.G. H.G.
74.8 99.9 197.3 At5g05270 830409 chalcone-flavanone isomerase family protein F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P O.I. C.G. H.G.
70.4 99.9 50.9 At3g15050 820734 IQD10 (IQ-domain 10) F:calmodulin binding;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
70.2 99.9 184.7 At5g47350 834782 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
69.3 99.9 26.7 At5g26120 832681 ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2) F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO O.I. C.G. H.G.
69.1 99.9 51.8 At2g28650 817414 ATEXO70H8 (exocyst subunit EXO70 family protein H8) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
68.1 99.9 90.8 At1g65480 842859 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. O.I. C.G. H.G.
67.9 99.9 45.0 At5g18290 831947 SIP1 Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER O.I. C.G. H.G.
67.4 99.8 35.8 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
66.9 99.8 199.4 At3g57240 824891 BG3 (BETA-1,3-GLUCANASE 3) encodes a member of glycosyl hydrolase family 17 O.I. C.G. H.G.
66.2 99.8 156.5 At3g20520 821598 SVL3 (SHV3-LIKE 3) F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM O.I. C.G. H.G.
66.1 99.8 149.3 At4g12890 826901 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
65.6 99.8 52.4 At1g49800 841403 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
62.3 99.8 119.8 At2g23910 816923 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
58.7 99.8 45.2 At1g27360 839625 squamosa promoter-binding protein-like 11 (SPL11) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
57.3 99.8 38.8 At4g17480 827459 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
56.7 99.8 145.7 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
52.1 99.8 10.8 At1g31250 840013 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA O.I. C.G. H.G.
51.9 99.8 23.9 At3g28960 822536 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV O.I. C.G. H.G.
50.2 99.8 107.3 At1g07090 837220 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
48.0 99.8 144.6 At5g09370 830796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;P O.I. C.G. H.G.
47.5 99.8 35.7 At2g43660 818968 glycosyl hydrolase family protein 17 F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
46.8 99.8 25.6 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
45.8 99.8 22.6 At5g55320 835625 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:unknown;C:unknown;BPOF O.I. C.G. H.G.
44.3 99.8 33.2 At4g30110 829134 HMA2 encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc O.I. C.G. H.G.
44.1 99.8 145.7 At1g63690 842673 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF O.I. C.G. H.G.
44.1 99.8 36.8 At1g30220 839902 INT2 (INOSITOL TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
43.6 99.8 38.8 At1g09540 837480 MYB61 (MYB DOMAIN PROTEIN 61) Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. O.I. C.G. H.G.
42.3 99.8 81.7 At3g49270 824088 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
41.9 99.8 97.4 At3g24250 822012 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.
41.7 99.8 36.6 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
40.9 99.8 49.5 At2g25540 817092 CESA10 (CELLULOSE SYNTHASE 10) cellulose synthase O.I. C.G. H.G.
40.3 99.8 52.2 At3g60160 825186 ATMRP9 member of MRP subfamily O.I. C.G. H.G.
39.4 99.8 225.1 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
39.1 99.8 49.7 At5g54530 835541 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
38.9 99.8 97.5 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
38.9 99.8 35.1 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. O.I. C.G. H.G.
38.3 99.8 16.9 At3g62610 825435 ATMYB11 (MYB DOMAIN PROTEIN 11) Member of the R2R3 factor gene family. O.I. C.G. H.G.
37.9 99.8 27.8 At1g78950 844234 beta-amyrin synthase, putative F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMA O.I. C.G. H.G.
37.1 99.7 189.8 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
34.9 99.7 89.6 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
34.9 99.7 42.5 At1g09790 837508 COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR) F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
34.6 99.7 500.3 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
34.5 99.7 52.2 At1g14380 838000 IQD28 (IQ67 DOMAIN PROTEIN 28) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
34.0 99.7 28.9 At3g54320 824599 WRI1 (WRINKLED 1) WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. O.I. C.G. H.G.
33.8 99.7 55.1 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.6 99.7 78.7 At5g02540 831913 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA O.I. C.G. H.G.
33.6 99.7 69.2 At5g11230 830993 organic anion transmembrane transporter F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA O.I. C.G. H.G.
32.9 99.7 41.9 At4g21480 828233 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
31.6 99.7 18.9 At4g09820 826571 TT8 (TRANSPARENT TESTA 8) TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development. O.I. C.G. H.G.
31.2 99.7 132.6 At2g19570 816476 CDA1 (CYTIDINE DEAMINASE 1) Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. O.I. C.G. H.G.
31.1 99.7 107.9 At2g20700 816598 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
31.0 99.7 32.1 At3g07340 819922 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB O.I. C.G. H.G.
30.2 99.7 95.5 At3g19550 821491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
29.7 99.7 151.3 At1g75390 843875 AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44) F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM O.I. C.G. H.G.
29.6 99.7 193.2 At5g48880 834946 PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2) Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2. O.I. C.G. H.G.
29.5 99.7 32.7 At2g13810 815864 ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1) F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF O.I. C.G. H.G.
29.4 99.7 90.4 At4g24130 828513 unknown protein F:unknown;P:biological_process unknown;C:nucleus;P O.I. C.G. H.G.
29.4 99.7 66.6 At5g65710 836700 HSL2 (HAESA-Like 2) F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
29.3 99.7 112.1 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
29.2 99.7 222.1 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
29.1 99.7 26.5 At4g32500 829385 AKT5 member of Stelar K+ outward rectifying channel (SKOR) family O.I. C.G. H.G.
29.1 99.7 12.0 At2g30300 817580 nodulin-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOFAM O.I. C.G. H.G.
28.5 99.7 24.1 At5g16600 831522 MYB43 (myb domain protein 43) Encodes a putative transcription factor (MYB43). O.I. C.G. H.G.
28.0 99.7 57.5 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
392.2	100.0	67.3	At2g32370	817798	HDG3 (HOMEODOMAIN GLABROUS 3)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.	O.I.	C.G.	H.G.
381.5	100.0	161.0	At5g38180	833798	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
324.5	100.0	441.1	At3g20210	821565	DELTA-VPE	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	O.I.	C.G.	H.G.
320.0	100.0	318.6	At1g61720	842469	BAN (BANYULS)	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
308.5	100.0	503.9	At1g56100	842062	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV	O.I.	C.G.	H.G.
234.9	100.0	72.2	At5g13670	831212	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
215.2	100.0	332.7	At5g49180	834977	pectinesterase family protein	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.	O.I.	C.G.	H.G.
208.8	100.0	76.8	At1g34580	840362	monosaccharide transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
199.3	100.0	78.7	At1g71690	843495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
174.1	100.0	503.4	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
168.4	100.0	306.3	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
163.4	99.9	40.5	At3g02500	821065	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
161.5	99.9	107.7	At2g21220	816659	auxin-responsive protein, putative	F:calmodulin binding;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
143.2	99.9	118.0	At4g26590	828766	OPT5 (OLIGOPEPTIDE TRANSPORTER 5)	oligopeptide transporter	O.I.	C.G.	H.G.
133.7	99.9	37.2	At1g63910	842694	AtMYB103 (myb domain protein 103)	member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
133.3	99.9	66.3	At5g57520	835856	ZFP2 (ZINC FINGER PROTEIN 2)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
128.3	99.9	340.1	At2g38900	818474	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
128.2	99.9	61.0	At1g43640	840948	AtTLP5 (TUBBY LIKE PROTEIN 5)	Member of TLP family	O.I.	C.G.	H.G.
121.0	99.9	28.8	At5g39130	833906	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
117.5	99.9	106.1	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
114.2	99.9	66.0	At4g24260	828527	ATGH9A3 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A3)	Encodes a protein with similarity to endo-1,4-b-glucanases. KOR3 is induced by nemotodes and is expressed in syncitia induced by Heterodera schachtii.May be involved in the development and function of syncitia.	O.I.	C.G.	H.G.
104.6	99.9	78.5	At5g39220	833918	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPAF	O.I.	C.G.	H.G.
103.5	99.9	111.7	At1g78970	844237	LUP1 (LUPEOL SYNTHASE 1)	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.	O.I.	C.G.	H.G.
102.6	99.9	73.5	At5g58500	835963	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
96.3	99.9	36.9	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
95.4	99.9	648.2	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
95.4	99.9	28.7	At5g53100	835390	oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
94.4	99.9	26.0	At5g46040	834645	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:membrane;BPMOF	O.I.	C.G.	H.G.
90.3	99.9	28.9	At3g17600	821026	IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.	O.I.	C.G.	H.G.
86.0	99.9	12.9	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
83.8	99.9	89.3	At2g21430	816682	cysteine proteinase A494, putative / thiol protease, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
82.9	99.9	67.8	At3g60900	825261	FLA10	F:unknown;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMFVA	O.I.	C.G.	H.G.
81.0	99.9	309.3	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
80.9	99.9	78.9	At4g16563	827356	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO	O.I.	C.G.	H.G.
79.7	99.9	145.9	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
76.5	99.9	99.6	At5g51950	835270	glucose-methanol-choline (GMC) oxidoreductase family protein	F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:response to salt stress;C:endomembrane system;OBFMPVA	O.I.	C.G.	H.G.
74.8	99.9	197.3	At5g05270	830409	chalcone-flavanone isomerase family protein	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;P	O.I.	C.G.	H.G.
70.4	99.9	50.9	At3g15050	820734	IQD10 (IQ-domain 10)	F:calmodulin binding;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
70.2	99.9	184.7	At5g47350	834782	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
69.3	99.9	26.7	At5g26120	832681	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO	O.I.	C.G.	H.G.
69.1	99.9	51.8	At2g28650	817414	ATEXO70H8 (exocyst subunit EXO70 family protein H8)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
68.1	99.9	90.8	At1g65480	842859	FT (FLOWERING LOCUS T)	FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	O.I.	C.G.	H.G.
67.9	99.9	45.0	At5g18290	831947	SIP1	Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER	O.I.	C.G.	H.G.
67.4	99.8	35.8	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
66.9	99.8	199.4	At3g57240	824891	BG3 (BETA-1,3-GLUCANASE 3)	encodes a member of glycosyl hydrolase family 17	O.I.	C.G.	H.G.
66.2	99.8	156.5	At3g20520	821598	SVL3 (SHV3-LIKE 3)	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:anchored to membrane;BPOM	O.I.	C.G.	H.G.
66.1	99.8	149.3	At4g12890	826901	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
65.6	99.8	52.4	At1g49800	841403	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
62.3	99.8	119.8	At2g23910	816923	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
58.7	99.8	45.2	At1g27360	839625	squamosa promoter-binding protein-like 11 (SPL11)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
57.3	99.8	38.8	At4g17480	827459	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
56.7	99.8	145.7	At4g25830	828688	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
52.1	99.8	10.8	At1g31250	840013	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMPBFVA	O.I.	C.G.	H.G.
51.9	99.8	23.9	At3g28960	822536	amino acid transporter family protein	F:amino acid transmembrane transporter activity;P:amino acid transport;C:plasma membrane, membrane;MPFOBAV	O.I.	C.G.	H.G.
50.2	99.8	107.3	At1g07090	837220	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
48.0	99.8	144.6	At5g09370	830796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to membrane;P	O.I.	C.G.	H.G.
47.5	99.8	35.7	At2g43660	818968	glycosyl hydrolase family protein 17	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
46.8	99.8	25.6	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
45.8	99.8	22.6	At5g55320	835625	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:unknown;C:unknown;BPOF	O.I.	C.G.	H.G.
44.3	99.8	33.2	At4g30110	829134	HMA2	encodes a protein similar to Zn-ATPase, a P1B-type ATPases transport zinc	O.I.	C.G.	H.G.
44.1	99.8	145.7	At1g63690	842673	protease-associated (PA) domain-containing protein	F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
44.1	99.8	36.8	At1g30220	839902	INT2 (INOSITOL TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
43.6	99.8	38.8	At1g09540	837480	MYB61 (MYB DOMAIN PROTEIN 61)	Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.	O.I.	C.G.	H.G.
42.3	99.8	81.7	At3g49270	824088	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
41.9	99.8	97.4	At3g24250	822012	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.
41.7	99.8	36.6	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
40.9	99.8	49.5	At2g25540	817092	CESA10 (CELLULOSE SYNTHASE 10)	cellulose synthase	O.I.	C.G.	H.G.
40.3	99.8	52.2	At3g60160	825186	ATMRP9	member of MRP subfamily	O.I.	C.G.	H.G.
39.4	99.8	225.1	At4g22870	828386	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
39.1	99.8	49.7	At5g54530	835541	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
38.9	99.8	97.5	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
38.9	99.8	35.1	At1g27380	839627	RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	O.I.	C.G.	H.G.
38.3	99.8	16.9	At3g62610	825435	ATMYB11 (MYB DOMAIN PROTEIN 11)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
37.9	99.8	27.8	At1g78950	844234	beta-amyrin synthase, putative	F:beta-amyrin synthase activity;P:unknown;C:unknown;BPOFMA	O.I.	C.G.	H.G.
37.1	99.7	189.8	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
34.9	99.7	89.6	At4g18780	827612	IRX1 (IRREGULAR XYLEM 1)	Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
34.9	99.7	42.5	At1g09790	837508	COBL6 (COBRA-LIKE PROTEIN 6 PRECURSOR)	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
34.6	99.7	500.3	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
34.5	99.7	52.2	At1g14380	838000	IQD28 (IQ67 DOMAIN PROTEIN 28)	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
34.0	99.7	28.9	At3g54320	824599	WRI1 (WRINKLED 1)	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.	O.I.	C.G.	H.G.
33.8	99.7	55.1	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.6	99.7	78.7	At5g02540	831913	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPA	O.I.	C.G.	H.G.
33.6	99.7	69.2	At5g11230	830993	organic anion transmembrane transporter	F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA	O.I.	C.G.	H.G.
32.9	99.7	41.9	At4g21480	828233	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
31.6	99.7	18.9	At4g09820	826571	TT8 (TRANSPARENT TESTA 8)	TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.	O.I.	C.G.	H.G.
31.2	99.7	132.6	At2g19570	816476	CDA1 (CYTIDINE DEAMINASE 1)	Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.	O.I.	C.G.	H.G.
31.1	99.7	107.9	At2g20700	816598	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
31.0	99.7	32.1	At3g07340	819922	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB	O.I.	C.G.	H.G.
30.2	99.7	95.5	At3g19550	821491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
29.7	99.7	151.3	At1g75390	843875	AtbZIP44 (Arabidopsis thaliana basic leucine-zipper 44)	F:transcription factor activity, protein heterodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PFOM	O.I.	C.G.	H.G.
29.6	99.7	193.2	At5g48880	834946	PKT2 (PEROXISOMAL 3-KETO-ACYL-COA THIOLASE 2)	Encodes a peroxisomal 3-keto-acyl-CoA thiolase 2 precursor. EC2.3.1.16 thiolases. AT5G48880.1 is named PKT1 and AT5G48880.2 is named PKT2.	O.I.	C.G.	H.G.
29.5	99.7	32.7	At2g13810	815864	ALD1 (AGD2-LIKE DEFENSE RESPONSE PROTEIN1)	F:transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity;P:asparagine catabolic process, biosynthetic process, glutamate catabolic process to oxaloacetate, aspartate transamidation;C:chloroplast;BOAPMF	O.I.	C.G.	H.G.
29.4	99.7	90.4	At4g24130	828513	unknown protein	F:unknown;P:biological_process unknown;C:nucleus;P	O.I.	C.G.	H.G.
29.4	99.7	66.6	At5g65710	836700	HSL2 (HAESA-Like 2)	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
29.3	99.7	112.1	At5g44030	834426	CESA4 (CELLULOSE SYNTHASE A4)	Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
29.2	99.7	222.1	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
29.1	99.7	26.5	At4g32500	829385	AKT5	member of Stelar K+ outward rectifying channel (SKOR) family	O.I.	C.G.	H.G.
29.1	99.7	12.0	At2g30300	817580	nodulin-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBOFAM	O.I.	C.G.	H.G.
28.5	99.7	24.1	At5g16600	831522	MYB43 (myb domain protein 43)	Encodes a putative transcription factor (MYB43).	O.I.	C.G.	H.G.
28.0	99.7	57.5	At5g15800	831436	SEP1 (SEPALLATA1)	Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133820
Assay name	Yang_1-5_young-pod_Rep3_ATH1
GSE experiment	GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM133820 Assay name Yang_1-5_young-pod_Rep3_ATH1 GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

GSM ID GSM133820

Assay name Yang_1-5_young-pod_Rep3_ATH1

GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana