CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133818

Assay name Yang_1-3_young-pod_Rep2_ATH1

GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
392.1 100.0 62.8 At3g02500 821065 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
299.4 100.0 142.6 At5g38180 833798 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
277.0 100.0 95.6 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
239.9 100.0 131.3 At2g21220 816659 auxin-responsive protein, putative F:calmodulin binding;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
177.5 100.0 382.2 At1g56100 842062 pectinesterase inhibitor domain-containing protein F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV O.I. C.G. H.G.
123.4 99.9 15.4 At3g21850 821739 ASK9 (ARABIDOPSIS SKP1-LIKE 9) one of Arabidopsis SKP1 homologues O.I. C.G. H.G.
122.6 99.9 271.1 At3g20210 821565 DELTA-VPE Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat. O.I. C.G. H.G.
113.0 99.9 405.5 At4g15750 827253 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
108.8 99.9 39.0 At1g29460 839822 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
105.7 99.9 26.9 At5g39130 833906 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB O.I. C.G. H.G.
105.1 99.9 42.7 At3g50990 824263 electron carrier/ heme binding / peroxidase F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO O.I. C.G. H.G.
93.9 99.9 106.4 At1g78970 844237 LUP1 (LUPEOL SYNTHASE 1) Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation. O.I. C.G. H.G.
80.7 99.9 48.4 At1g43640 840948 AtTLP5 (TUBBY LIKE PROTEIN 5) Member of TLP family O.I. C.G. H.G.
76.7 99.9 29.8 At2g32370 817798 HDG3 (HOMEODOMAIN GLABROUS 3) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. O.I. C.G. H.G.
74.4 99.9 45.9 At1g34580 840362 monosaccharide transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA O.I. C.G. H.G.
71.6 99.9 47.2 At1g71690 843495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB O.I. C.G. H.G.
71.6 99.9 21.2 At2g21200 816657 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
70.3 99.9 556.6 At4g12960 826908 gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF O.I. C.G. H.G.
70.0 99.9 197.4 At2g46960 819310 CYP709B1 member of CYP709B O.I. C.G. H.G.
69.3 99.9 83.2 At5g57920 835903 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
64.5 99.8 143.0 At1g61720 842469 BAN (BANYULS) Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. O.I. C.G. H.G.
63.7 99.8 239.6 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
63.2 99.8 78.4 At4g26590 828766 OPT5 (OLIGOPEPTIDE TRANSPORTER 5) oligopeptide transporter O.I. C.G. H.G.
59.3 99.8 316.6 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
55.8 99.8 54.2 At1g61810 842478 BGLU45 (BETA-GLUCOSIDASE 45) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
55.6 99.8 78.7 At5g50915 835164 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM O.I. C.G. H.G.
54.4 99.8 57.1 At2g25540 817092 CESA10 (CELLULOSE SYNTHASE 10) cellulose synthase O.I. C.G. H.G.
51.5 99.8 151.9 At5g59845 836106 gibberellin-regulated family protein F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
51.3 99.8 42.2 At1g27360 839625 squamosa promoter-binding protein-like 11 (SPL11) F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
50.7 99.8 40.1 At1g27380 839627 RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2) encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined. O.I. C.G. H.G.
49.5 99.8 16.8 At1g62900 842591 O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
47.9 99.8 13.7 At5g52500 835326 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.7 99.8 587.3 At5g59310 836050 LTP4 (LIPID TRANSFER PROTEIN 4) Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15. O.I. C.G. H.G.
47.7 99.8 30.1 At5g01200 831676 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
46.2 99.8 74.7 At1g65480 842859 FT (FLOWERING LOCUS T) FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1. O.I. C.G. H.G.
45.1 99.8 33.3 At3g54320 824599 WRI1 (WRINKLED 1) WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation. O.I. C.G. H.G.
44.4 99.8 23.1 At5g39090 833901 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO O.I. C.G. H.G.
43.4 99.8 34.0 At1g71890 843520 SUC5 Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation. O.I. C.G. H.G.
42.3 99.8 52.6 At5g48560 834912 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBV O.I. C.G. H.G.
41.0 99.8 87.7 At1g23200 838928 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM O.I. C.G. H.G.
41.0 99.8 39.9 At2g28650 817414 ATEXO70H8 (exocyst subunit EXO70 family protein H8) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
40.6 99.8 144.5 At5g49180 834977 pectinesterase family protein Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds. O.I. C.G. H.G.
40.0 99.8 36.5 At3g07340 819922 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB O.I. C.G. H.G.
39.4 99.8 49.9 At5g54530 835541 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.0 99.8 56.4 At3g08900 820039 RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3) Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells. O.I. C.G. H.G.
38.9 99.8 28.9 At4g17220 827434 ATMAP70-5 (microtubule-associated proteins 70-5) Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues. O.I. C.G. H.G.
38.6 99.8 80.6 At4g09890 826579 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.7 99.7 480.9 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
37.7 99.7 45.7 At3g15510 820790 ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2) Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2. O.I. C.G. H.G.
37.7 99.7 19.7 At5g26120 832681 ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2) F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO O.I. C.G. H.G.
37.6 99.7 18.0 At5g53100 835390 oxidoreductase, putative F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
37.3 99.7 42.0 At1g71250 843466 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
37.2 99.7 133.9 At1g63690 842673 protease-associated (PA) domain-containing protein F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF O.I. C.G. H.G.
36.6 99.7 150.5 At1g29050 839779 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
36.2 99.7 15.8 At2g47670 819380 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
35.4 99.7 67.4 At4g11180 826720 disease resistance-responsive family protein / dirigent family protein F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
35.2 99.7 48.7 At3g60160 825186 ATMRP9 member of MRP subfamily O.I. C.G. H.G.
34.6 99.7 89.2 At5g50750 835147 RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4) reversibly glycosylated polypeptide RGP-4 (RGP4) O.I. C.G. H.G.
34.3 99.7 52.0 At1g14380 838000 IQD28 (IQ67 DOMAIN PROTEIN 28) F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOPFBV O.I. C.G. H.G.
33.0 99.7 18.5 At1g63910 842694 AtMYB103 (myb domain protein 103) member of MYB3R- and R2R3- type MYB- encoding genes O.I. C.G. H.G.
32.8 99.7 33.7 At1g09540 837480 MYB61 (MYB DOMAIN PROTEIN 61) Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size. O.I. C.G. H.G.
32.3 99.7 239.2 At5g57800 835889 CER3 (ECERIFERUM 3) encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis. O.I. C.G. H.G.
30.9 99.7 54.4 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
30.4 99.7 122.0 At3g10340 820196 PAL4 (Phenylalanine ammonia-lyase 4) F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA O.I. C.G. H.G.
30.3 99.7 88.0 At1g22480 838854 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO O.I. C.G. H.G.
30.3 99.7 66.0 At1g29510 839828 SAUR68 (SMALL AUXIN UPREGULATED 68) F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
30.0 99.7 29.9 At5g18290 831947 SIP1 Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER O.I. C.G. H.G.
29.6 99.7 22.7 At3g55710 824737 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF O.I. C.G. H.G.
29.2 99.7 84.5 At1g04220 839578 KCS2 (3-KETOACYL-COA SYNTHASE 2) Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. C.G. H.G.
29.1 99.7 111.8 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
28.9 99.7 81.5 At4g18780 827612 IRX1 (IRREGULAR XYLEM 1) Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. O.I. C.G. H.G.
28.8 99.7 16.3 At3g17600 821026 IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31) Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development. O.I. C.G. H.G.
28.6 99.7 58.0 At5g15800 831436 SEP1 (SEPALLATA1) Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3. O.I. C.G. H.G.
28.1 99.7 71.0 At2g33480 817913 ANAC041 (Arabidopsis NAC domain containing protein 41) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
27.7 99.7 91.5 At2g41230 818722 unknown protein F:unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
26.3 99.7 29.5 At5g53200 835401 TRY (TRIPTYCHON) F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM O.I. C.G. H.G.
26.2 99.7 207.7 At4g22570 828353 APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3) Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1. O.I. C.G. H.G.
26.2 99.7 37.1 At5g58500 835963 LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
25.4 99.6 76.3 At1g07090 837220 LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
24.6 99.6 59.2 At5g11230 830993 organic anion transmembrane transporter F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA O.I. C.G. H.G.
24.4 99.6 169.7 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
24.2 99.6 22.2 At5g16600 831522 MYB43 (myb domain protein 43) Encodes a putative transcription factor (MYB43). O.I. C.G. H.G.
23.7 99.6 115.6 At2g19570 816476 CDA1 (CYTIDINE DEAMINASE 1) Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds. O.I. C.G. H.G.
23.6 99.6 123.1 At4g30470 829170 cinnamoyl-CoA reductase-related F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA O.I. C.G. H.G.
23.6 99.6 21.5 At1g50590 841481 pirin, putative F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;BOFPMA O.I. C.G. H.G.
23.6 99.6 19.6 At5g43740 834394 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA O.I. C.G. H.G.
23.3 99.6 81.1 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
22.9 99.6 36.7 At5g39220 833918 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPAF O.I. C.G. H.G.
22.7 99.6 53.9 At5g67110 836846 ALC (ALCATRAZ) encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce. O.I. C.G. H.G.
22.5 99.6 36.6 At4g37050 829859 PLP4 (PATATIN-LIKE PROTEIN 4) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
22.4 99.6 22.3 At5g13670 831212 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM O.I. C.G. H.G.
22.1 99.6 65.1 At5g60910 836212 AGL8 (agamous-like 8) MADS box gene negatively regulated by APETALA1 O.I. C.G. H.G.
21.8 99.6 26.4 At3g25260 822120 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF O.I. C.G. H.G.
21.5 99.6 151.2 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
21.2 99.6 76.6 At5g62150 836335 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P O.I. C.G. H.G.
21.2 99.6 22.7 At1g29450 839821 auxin-responsive protein, putative F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
20.8 99.6 65.2 At4g27435 828852 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
20.8 99.6 25.3 At1g30220 839902 INT2 (INOSITOL TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
20.7 99.6 129.6 At4g19420 827683 pectinacetylesterase family protein F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA O.I. C.G. H.G.
20.6 99.6 68.3 At3g24250 822012 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
392.1	100.0	62.8	At3g02500	821065	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
299.4	100.0	142.6	At5g38180	833798	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
277.0	100.0	95.6	At5g57520	835856	ZFP2 (ZINC FINGER PROTEIN 2)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
239.9	100.0	131.3	At2g21220	816659	auxin-responsive protein, putative	F:calmodulin binding;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
177.5	100.0	382.2	At1g56100	842062	pectinesterase inhibitor domain-containing protein	F:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;OMFPBAV	O.I.	C.G.	H.G.
123.4	99.9	15.4	At3g21850	821739	ASK9 (ARABIDOPSIS SKP1-LIKE 9)	one of Arabidopsis SKP1 homologues	O.I.	C.G.	H.G.
122.6	99.9	271.1	At3g20210	821565	DELTA-VPE	Encodes a vacuolar processing enzyme with caspase-1-like activity that is specifically expressed in inner integument of developing seeds. Mutants display abnormal seed coat development. It is speculated to be involved in cell death of limited cell layers, the purpose of which is to form a seed coat.	O.I.	C.G.	H.G.
113.0	99.9	405.5	At4g15750	827253	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
108.8	99.9	39.0	At1g29460	839822	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
105.7	99.9	26.9	At5g39130	833906	germin-like protein, putative	F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOB	O.I.	C.G.	H.G.
105.1	99.9	42.7	At3g50990	824263	electron carrier/ heme binding / peroxidase	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO	O.I.	C.G.	H.G.
93.9	99.9	106.4	At1g78970	844237	LUP1 (LUPEOL SYNTHASE 1)	Lupeol synthase. Converts oxidosqualene to multiple triterpene alcohols and a triterpene diols. This conversion proceeds through the formation of a 17β-dammarenyl cation.	O.I.	C.G.	H.G.
80.7	99.9	48.4	At1g43640	840948	AtTLP5 (TUBBY LIKE PROTEIN 5)	Member of TLP family	O.I.	C.G.	H.G.
76.7	99.9	29.8	At2g32370	817798	HDG3 (HOMEODOMAIN GLABROUS 3)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.	O.I.	C.G.	H.G.
74.4	99.9	45.9	At1g34580	840362	monosaccharide transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
71.6	99.9	47.2	At1g71690	843495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POB	O.I.	C.G.	H.G.
71.6	99.9	21.2	At2g21200	816657	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
70.3	99.9	556.6	At4g12960	826908	gamma interferon responsive lysosomal thiol reductase family protein / GILT family protein	F:catalytic activity;P:biological_process unknown;C:endomembrane system;MPOF	O.I.	C.G.	H.G.
70.0	99.9	197.4	At2g46960	819310	CYP709B1	member of CYP709B	O.I.	C.G.	H.G.
69.3	99.9	83.2	At5g57920	835903	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
64.5	99.8	143.0	At1g61720	842469	BAN (BANYULS)	Negative regulator of flavonoid biosynthesis, mutants accumulate flavonoid pigments in their seed coat, putative oxidoreductase. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.	O.I.	C.G.	H.G.
63.7	99.8	239.6	At2g38900	818474	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
63.2	99.8	78.4	At4g26590	828766	OPT5 (OLIGOPEPTIDE TRANSPORTER 5)	oligopeptide transporter	O.I.	C.G.	H.G.
59.3	99.8	316.6	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
55.8	99.8	54.2	At1g61810	842478	BGLU45 (BETA-GLUCOSIDASE 45)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
55.6	99.8	78.7	At5g50915	835164	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM	O.I.	C.G.	H.G.
54.4	99.8	57.1	At2g25540	817092	CESA10 (CELLULOSE SYNTHASE 10)	cellulose synthase	O.I.	C.G.	H.G.
51.5	99.8	151.9	At5g59845	836106	gibberellin-regulated family protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
51.3	99.8	42.2	At1g27360	839625	squamosa promoter-binding protein-like 11 (SPL11)	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
50.7	99.8	40.1	At1g27380	839627	RIC2 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 2)	encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Interacts with Rop1 and is involved in pollen tube growth and function. Protein most similar to RIC4 (family subgroup V). Gene is expressed in all tissues examined.	O.I.	C.G.	H.G.
49.5	99.8	16.8	At1g62900	842591	O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
47.9	99.8	13.7	At5g52500	835326	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.7	99.8	587.3	At5g59310	836050	LTP4 (LIPID TRANSFER PROTEIN 4)	Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.	O.I.	C.G.	H.G.
47.7	99.8	30.1	At5g01200	831676	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
46.2	99.8	74.7	At1g65480	842859	FT (FLOWERING LOCUS T)	FT, together with LFY, promotes flowering and is antagonistic with its homologous gene, TERMINAL FLOWER1 (TFL1). FT is expressed in leaves and is induced by long day treatment. Either the FT mRNA or protein is translocated to the shoot apex where it induces its own expression. Recent data suggests that FT protein acts as a long-range signal. FT is a target of CO and acts upstream of SOC1.	O.I.	C.G.	H.G.
45.1	99.8	33.3	At3g54320	824599	WRI1 (WRINKLED 1)	WRINKLED1 encodes transcription factor of the AP2/ERWEBP class. Protein has two plant-specific (AP2/EREB) DNA-binding domains and is involved in the control of storage compound biosynthesis in Arabidopsis. Mutants have wrinkled seed phenotype, due to a defect in the incorporation of sucrose and glucose into triacylglycerols. Transgenic sGsL plants (21-day-old) grown on 6% sucrose for 24 hours had 2-fold increase in levels of expressions (sGsL line carries a single copy of T-DNA containing the Spomin::GUS-Spomin::LUC dual reporter genes in the upper arm of chromosome 5 of ecotype Col-0. The sporamin .minimal. promoter directs sugar-inducible expression of the LUC and GUS reporters in leaves). Regulation by LEC2 promotes fatty acid accumulation during seed maturation.	O.I.	C.G.	H.G.
44.4	99.8	23.1	At5g39090	833901	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO	O.I.	C.G.	H.G.
43.4	99.8	34.0	At1g71890	843520	SUC5	Encodes a sucrose transporter that is expressed in the endosperm. Mutants have delayed accumulation of fatty acids and embryo maturation.	O.I.	C.G.	H.G.
42.3	99.8	52.6	At5g48560	834912	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;POMFBV	O.I.	C.G.	H.G.
41.0	99.8	87.7	At1g23200	838928	pectinesterase family protein	F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAOM	O.I.	C.G.	H.G.
41.0	99.8	39.9	At2g28650	817414	ATEXO70H8 (exocyst subunit EXO70 family protein H8)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
40.6	99.8	144.5	At5g49180	834977	pectinesterase family protein	Encodes a putative pectin methylesterase. The gene is preferentially expressed in floral buds.	O.I.	C.G.	H.G.
40.0	99.8	36.5	At3g07340	819922	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;POMFB	O.I.	C.G.	H.G.
39.4	99.8	49.9	At5g54530	835541	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.0	99.8	56.4	At3g08900	820039	RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)	Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.	O.I.	C.G.	H.G.
38.9	99.8	28.9	At4g17220	827434	ATMAP70-5 (microtubule-associated proteins 70-5)	Encodes a microtubule associated protein (MAP70-5). Expressed in all tissues.	O.I.	C.G.	H.G.
38.6	99.8	80.6	At4g09890	826579	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.7	99.7	480.9	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
37.7	99.7	45.7	At3g15510	820790	ATNAC2 (ARABIDOPSIS NAC DOMAIN CONTAINING PROTEIN 2)	Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.	O.I.	C.G.	H.G.
37.7	99.7	19.7	At5g26120	832681	ASD2 (ALPHA-L-ARABINOFURANOSIDASE 2)	F:hydrolase activity, acting on glycosyl bonds, alpha-N-arabinofuranosidase activity;P:L-arabinose metabolic process;C:endomembrane system;BFPO	O.I.	C.G.	H.G.
37.6	99.7	18.0	At5g53100	835390	oxidoreductase, putative	F:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
37.3	99.7	42.0	At1g71250	843466	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
37.2	99.7	133.9	At1g63690	842673	protease-associated (PA) domain-containing protein	F:peptidase activity, aspartic-type endopeptidase activity;P:proteolysis;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
36.6	99.7	150.5	At1g29050	839779	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
36.2	99.7	15.8	At2g47670	819380	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
35.4	99.7	67.4	At4g11180	826720	disease resistance-responsive family protein / dirigent family protein	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
35.2	99.7	48.7	At3g60160	825186	ATMRP9	member of MRP subfamily	O.I.	C.G.	H.G.
34.6	99.7	89.2	At5g50750	835147	RGP4 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 4)	reversibly glycosylated polypeptide RGP-4 (RGP4)	O.I.	C.G.	H.G.
34.3	99.7	52.0	At1g14380	838000	IQD28 (IQ67 DOMAIN PROTEIN 28)	F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOPFBV	O.I.	C.G.	H.G.
33.0	99.7	18.5	At1g63910	842694	AtMYB103 (myb domain protein 103)	member of MYB3R- and R2R3- type MYB- encoding genes	O.I.	C.G.	H.G.
32.8	99.7	33.7	At1g09540	837480	MYB61 (MYB DOMAIN PROTEIN 61)	Encodes putative transcription factor. Mutants lack of mucilage extrusion from the seeds during imbibition. Reduced quantities of mucilage are deposited during the development of the seed coat epidermis in myb61 mutants. Expressed in guard cells,loss of function mutations show an increase in stomatal pore opening suggesting a role in ABA independent regulation of stomatal pore size.	O.I.	C.G.	H.G.
32.3	99.7	239.2	At5g57800	835889	CER3 (ECERIFERUM 3)	encodes a transmembrane protein with similarity to the sterol desaturase family at the N-terminus and to the short-chain dehydrogenase/reductase family at the C-terminus. Mutant analyses indicate this protein is involved in cuticle membrane and wax biosynthesis.	O.I.	C.G.	H.G.
30.9	99.7	54.4	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
30.4	99.7	122.0	At3g10340	820196	PAL4 (Phenylalanine ammonia-lyase 4)	F:ammonia-lyase activity, ammonia ligase activity, catalytic activity;P:L-phenylalanine catabolic process, biosynthetic process;C:cytoplasm;BPOFMA	O.I.	C.G.	H.G.
30.3	99.7	88.0	At1g22480	838854	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PFO	O.I.	C.G.	H.G.
30.3	99.7	66.0	At1g29510	839828	SAUR68 (SMALL AUXIN UPREGULATED 68)	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
30.0	99.7	29.9	At5g18290	831947	SIP1	Belongs to a family of plant aquaporins.Similar to yeast and radish aquaporins. Located on ER	O.I.	C.G.	H.G.
29.6	99.7	22.7	At3g55710	824737	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMVBOF	O.I.	C.G.	H.G.
29.2	99.7	84.5	At1g04220	839578	KCS2 (3-KETOACYL-COA SYNTHASE 2)	Encodes KCS2, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).	O.I.	C.G.	H.G.
29.1	99.7	111.8	At5g44030	834426	CESA4 (CELLULOSE SYNTHASE A4)	Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
28.9	99.7	81.5	At4g18780	827612	IRX1 (IRREGULAR XYLEM 1)	Encodes a member of the cellulose synthase family involved in secondary cell wall biosynthesis. Mutants have abnormal xylem formation, reduced cellulose content, and enhanced drought and osmotic stress tolerance. Mediates resistance towards bacterial pathogens via ABA. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling.	O.I.	C.G.	H.G.
28.8	99.7	16.3	At3g17600	821026	IAA31 (INDOLE-3-ACETIC ACID INDUCIBLE 31)	Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA31 shares several residues with the conserved domain II region, believed to act as a degron in many of the rapidly degraded Aux/IAA family members. An IAA31 fusion protein is quite long-lived, but can be degraded more rapidly in the presence of auxin. Unlike many other family members, IAA31 transcript levels do not rise in response to auxin. Nevertheless, overexpression of IAA31 leads to defects in auxin-related processes such as gravitropism, root development, shoot development, and cotyledon vascular development.	O.I.	C.G.	H.G.
28.6	99.7	58.0	At5g15800	831436	SEP1 (SEPALLATA1)	Encodes a MADS box transcription factor involved flower and ovule development. Functionally redundant with SEP2 and SEP3.	O.I.	C.G.	H.G.
28.1	99.7	71.0	At2g33480	817913	ANAC041 (Arabidopsis NAC domain containing protein 41)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
27.7	99.7	91.5	At2g41230	818722	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
26.3	99.7	29.5	At5g53200	835401	TRY (TRIPTYCHON)	F:transcription factor activity, DNA binding;P:trichome branching, regulation of transcription;C:unknown;POM	O.I.	C.G.	H.G.
26.2	99.7	207.7	At4g22570	828353	APT3 (ADENINE PHOSPHORIBOSYL TRANSFERASE 3)	Encodes an adenine phosphoribosyltransferase (APT; EC 2.4.2.7), which is a constitutively expressed enzyme involved in the one-step salvage of adenine to AMP. APT3 has higher affinity for zeatin, isopentenyladenine and benzyladenine than APT1 but lower Vmax than APT1.	O.I.	C.G.	H.G.
26.2	99.7	37.1	At5g58500	835963	LSH5 (LIGHT SENSITIVE HYPOCOTYLS 5)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
25.4	99.6	76.3	At1g07090	837220	LSH6 (LIGHT SENSITIVE HYPOCOTYLS 6)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
24.6	99.6	59.2	At5g11230	830993	organic anion transmembrane transporter	F:organic anion transmembrane transporter activity;P:unknown;C:endomembrane system;PMFOBA	O.I.	C.G.	H.G.
24.4	99.6	169.7	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
24.2	99.6	22.2	At5g16600	831522	MYB43 (myb domain protein 43)	Encodes a putative transcription factor (MYB43).	O.I.	C.G.	H.G.
23.7	99.6	115.6	At2g19570	816476	CDA1 (CYTIDINE DEAMINASE 1)	Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.	O.I.	C.G.	H.G.
23.6	99.6	123.1	At4g30470	829170	cinnamoyl-CoA reductase-related	F:coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, cellular metabolic process, metabolic process;C:cellular_component unknown;POBFMA	O.I.	C.G.	H.G.
23.6	99.6	21.5	At1g50590	841481	pirin, putative	F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;BOFPMA	O.I.	C.G.	H.G.
23.6	99.6	19.6	At5g43740	834394	disease resistance protein (CC-NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:endomembrane system;PMBOFA	O.I.	C.G.	H.G.
23.3	99.6	81.1	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
22.9	99.6	36.7	At5g39220	833918	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOMPAF	O.I.	C.G.	H.G.
22.7	99.6	53.9	At5g67110	836846	ALC (ALCATRAZ)	encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.	O.I.	C.G.	H.G.
22.5	99.6	36.6	At4g37050	829859	PLP4 (PATATIN-LIKE PROTEIN 4)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
22.4	99.6	22.3	At5g13670	831212	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BOPAM	O.I.	C.G.	H.G.
22.1	99.6	65.1	At5g60910	836212	AGL8 (agamous-like 8)	MADS box gene negatively regulated by APETALA1	O.I.	C.G.	H.G.
21.8	99.6	26.4	At3g25260	822120	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPMOF	O.I.	C.G.	H.G.
21.5	99.6	151.2	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
21.2	99.6	76.6	At5g62150	836335	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
21.2	99.6	22.7	At1g29450	839821	auxin-responsive protein, putative	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
20.8	99.6	65.2	At4g27435	828852	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
20.8	99.6	25.3	At1g30220	839902	INT2 (INOSITOL TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
20.7	99.6	129.6	At4g19420	827683	pectinacetylesterase family protein	F:carboxylesterase activity;P:biological_process unknown;C:endomembrane system;PMOBA	O.I.	C.G.	H.G.
20.6	99.6	68.3	At3g24250	822012	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	O.I.	C.G.	H.G.

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GSM ID	GSM133818
Assay name	Yang_1-3_young-pod_Rep2_ATH1
GSE experiment	GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM133818 Assay name Yang_1-3_young-pod_Rep2_ATH1 GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana

GSM ID GSM133818

Assay name Yang_1-3_young-pod_Rep2_ATH1

GSE experiment GSE5736: To identify changes in gene expression during silique senescence in Arabidopsis thaliana