Microarray experiments to specifically-expressed genes

GSM ID GSM133813
Assay name Diamond_A-2-Diamo-met_SLD
GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
595.1100.0110.7At3g171103768803-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
352.5100.042.7At3g45220823658serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
326.2100.086.8At2g21510816690DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
303.4100.077.1At1g440603767336transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
269.5100.058.8At5g52020835277AP2 domain-containing proteinencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
209.6100.095.3At1g63650842669EGL3 (ENHANCER OF GLABRA 3)Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.O.I.C.G.H.G.
176.8100.049.6At5g60470836168nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
168.0100.033.8At2g03160814845ASK19 (ARABIDOPSIS SKP1-LIKE 19)F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFVO.I.C.G.H.G.
167.8100.0183.0At5g05340830416peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBMO.I.C.G.H.G.
149.199.9309.1At2g123003768253transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
147.899.9334.1At2g122403768292transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
146.599.9330.5At2g106403767859transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
140.199.9334.7At3g303963769077transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
131.499.9123.8At2g047703767978transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
127.399.963.4At4g30430829166TET9 (TETRASPANIN9)Member of TETRASPANIN familyO.I.C.G.H.G.
120.999.943.7At4g15480827220UGT84A1Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.O.I.C.G.H.G.
120.499.982.8At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
111.599.9160.5At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
105.499.9117.5At1g44900841056ATP binding / DNA binding / DNA-dependent ATPaseF:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
98.699.957.3At2g43000818902anac042 (Arabidopsis NAC domain containing protein 42)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
87.899.936.4At5g46590834702anac096 (Arabidopsis NAC domain containing protein 96)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
87.299.9112.2At3g47780823932ATATH6member of ATH subfamilyO.I.C.G.H.G.
86.899.989.0At2g18900816406transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPAO.I.C.G.H.G.
84.699.9148.2At2g44370819044DC1 domain-containing proteinF:unknown;P:unknown;C:unknown;POMFO.I.C.G.H.G.
83.899.9125.5At1g61820842479BGLU46 (BETA GLUCOSIDASE 46)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
82.099.973.6At5g61890836310AP2 domain-containing transcription factor family proteinencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
81.299.9184.6At4g15630827240integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
80.799.9119.1At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
79.399.959.6At1g48260841246CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).O.I.C.G.H.G.
77.699.9255.3At2g27080817250harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
76.599.936.1At2g17620816269CYCB2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
75.899.9105.6At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
75.599.930.4At2g27120817254TIL2 (TILTED 2)Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.O.I.C.G.H.G.
75.099.9214.3At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
73.599.9206.8At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
73.599.969.2At1g69920843328ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
73.299.9165.0At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
70.999.928.3At5g11210830991ATGLR2.5member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
69.799.9112.1At5g15640831418mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPOO.I.C.G.H.G.
69.299.935.7At2g45280819136ATRAD51CEncodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.O.I.C.G.H.G.
67.499.823.5At3g29220822576transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
67.199.829.3At3g61340825306F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
67.099.873.7At5g57100835814transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
65.699.819.1At1g45100841077polyadenylate-binding protein, putative / PABP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
64.099.863.7At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.C.G.H.G.
60.999.836.5At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
59.899.813.7At1g66310842948F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
59.799.891.9At2g45290819137transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAPO.I.C.G.H.G.
58.699.899.7At2g02860814817SUT2 (SUCROSE TRANSPORTER 2)encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.O.I.C.G.H.G.
58.099.859.9At5g51480835222SKS2 (SKU5 SIMILAR 2)F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOAO.I.C.G.H.G.
57.999.837.4At3g60120825182BGLU27 (BETA GLUCOSIDASE 27)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
57.299.888.5At2g03800814906GEK1 (GEKO1)encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.O.I.C.G.H.G.
56.499.820.7At5g40990834101GLIP1 (GDSL LIPASE1)Component of plant resistance. Contains lipase signature motif and GDSL domain. Directly interferes with the fungal infection process by acting on fungal cell walls through its action as a antimicrobial compound. Critical component for both local and systemic resistance responses in the incompatible interaction with Alternaria brassicicola in the ethylene-dependent pathway.O.I.C.G.H.G.
55.799.860.1At5g24850832554CRY3 (cryptochrome 3)Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.O.I.C.G.H.G.
54.199.857.1At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
53.199.820.0At5g45220834558Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
52.899.8273.0At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
52.099.849.8At2g42360818837zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
51.299.841.4At1g69480843280EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
50.899.893.3At5g51220835197ubiquinol-cytochrome C chaperone family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFPO.I.C.G.H.G.
49.999.8240.3At3g47960823951proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFOO.I.C.G.H.G.
49.299.8170.1At2g22860816817ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
49.099.8206.5At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
48.699.833.4At1g51270841550structural molecule/ transmembrane receptorF:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFOO.I.C.G.H.G.
48.599.857.2At5g52070835283agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.199.898.5At3g29200822573CM1 (CHORISMATE MUTASE 1)L-ascorbate peroxidaseO.I.C.G.H.G.
47.599.826.7At1g68795843211CLE12 (CLAVATA3/ESR-RELATED 12)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.C.G.H.G.
45.499.8151.0At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.C.G.H.G.
45.099.888.9At5g24760832545alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAVO.I.C.G.H.G.
44.899.832.0At5g63770836497ATDGK2 (Diacylglycerol kinase 2)a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.O.I.C.G.H.G.
44.599.853.3At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
43.499.8127.7At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
42.499.840.4At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
42.399.860.4At3g17609821027HYH (HY5-HOMOLOG)F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFOO.I.C.G.H.G.
41.899.862.0At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
41.799.853.8At4g37770829933ACS8Encodes an auxin inducible ACC synthase.O.I.C.G.H.G.
41.599.8123.1At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
41.599.858.8At1g68290843158ENDO 2 (endonuclease 2)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.O.I.C.G.H.G.
41.399.897.9At4g03320827972tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)F:unknown;P:unknown;C:unknown;PBO.I.C.G.H.G.
41.399.835.6At1g334603766895transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
40.899.820.6At5g18920832010unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
40.799.839.4At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
38.099.876.2At5g25270832599-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVPO.I.C.G.H.G.
38.099.843.7At1g600808423033' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPBO.I.C.G.H.G.
37.999.850.5At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.C.G.H.G.
37.999.828.1At4g11030826704long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putativeF:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAVO.I.C.G.H.G.
37.899.8122.9At1g61340842428F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
36.299.7145.1At2g45240819132MAP1A (METHIONINE AMINOPEPTIDASE 1A)Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.O.I.C.G.H.G.
36.099.7164.6At5g12020831075HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)F:unknown;P:response to heat;C:cellular_component unknown;BPOFAMO.I.C.G.H.G.
35.499.7197.2At1g52890841722ANAC019 (Arabidopsis NAC domain containing protein 19)encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.O.I.C.G.H.G.
34.999.726.4At1g630403767616-a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
34.799.725.9At1g63210842626RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulatorF:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPAO.I.C.G.H.G.
34.699.7249.3At3g49780824140ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.O.I.C.G.H.G.
34.499.774.6At1g43860840982transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;MOFAPBO.I.C.G.H.G.
34.399.773.3At2g22250816758aminotransferase class I and II family proteinF:L-aspartate:2-oxoglutarate aminotransferase activity, pyridoxal phosphate binding, transferase activity, transferring nitrogenous groups, catalytic activity;P:embryonic development ending in seed dormancy;C:chloroplast;BOPAMFO.I.C.G.H.G.
33.899.733.9At5g50930835166DNA bindingF:DNA binding;P:biological_process unknown;C:endomembrane system;MFPOO.I.C.G.H.G.
32.599.778.0At5g42830834294transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
32.599.729.9At4g05110825856equilibrative nucleoside transporter, putative (ENT6)F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPFO.I.C.G.H.G.
32.499.7321.9At2g22470816779AGP2 (ARABINOGALACTAN PROTEIN 2)Encodes arabinogalactan-protein (AGP2).O.I.C.G.H.G.
32.299.7155.0At2g04040814938TX1AtDTX1 (At2g04040) has been identified as a detoxifying efflux carrier for plant-derived antibiotics and other toxic compounds, including CD2+.O.I.C.G.H.G.



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