CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133812

Assay name Diamond_A-1-Diamo-met_SLD

GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
810.9 100.0 136.8 At2g21510 816690 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
374.6 100.0 44.1 At3g45220 823658 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
213.3 100.0 96.1 At1g63650 842669 EGL3 (ENHANCER OF GLABRA 3) Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. O.I. C.G. H.G.
182.5 100.0 59.8 At1g44060 3767336 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
180.6 100.0 145.1 At2g04770 3767978 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
164.9 100.0 46.0 At5g52020 835277 AP2 domain-containing protein encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
159.9 99.9 95.5 At3g45960 823739 ATEXLA3 (arabidopsis thaliana expansin-like a3) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
149.2 99.9 333.6 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
146.8 99.9 31.6 At2g03160 814845 ASK19 (ARABIDOPSIS SKP1-LIKE 19) F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
138.5 99.9 323.4 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
125.8 99.9 41.8 At5g60470 836168 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
119.9 99.9 309.6 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
110.2 99.9 304.2 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
108.7 99.9 213.5 At4g15630 827240 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
98.1 99.9 191.0 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
93.8 99.9 128.3 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
91.3 99.9 241.9 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
91.0 99.9 53.6 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family O.I. C.G. H.G.
91.0 99.9 22.4 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
86.4 99.9 349.2 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
86.0 99.9 224.9 At2g22860 816817 ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR) Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
84.3 99.9 227.2 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
82.0 99.9 137.7 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA O.I. C.G. H.G.
73.5 99.9 98.1 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
71.5 99.9 161.5 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
71.1 99.9 80.6 At2g18900 816406 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPA O.I. C.G. H.G.
71.1 99.9 29.5 At2g27120 817254 TIL2 (TILTED 2) Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. O.I. C.G. H.G.
68.3 99.9 34.1 At2g17620 816269 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
68.0 99.9 38.6 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
65.1 99.8 31.3 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
64.4 99.8 105.0 At5g51220 835197 ubiquinol-cytochrome C chaperone family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP O.I. C.G. H.G.
60.3 99.8 106.4 At1g61820 842479 BGLU46 (BETA GLUCOSIDASE 46) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
58.5 99.8 59.4 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
56.0 99.8 105.7 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM O.I. C.G. H.G.
54.9 99.8 17.2 At3g48130 3769680 - ribosomal protein L13 homolog O.I. C.G. H.G.
54.3 99.8 66.4 At5g57100 835814 transporter-related F:unknown;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
53.3 99.8 63.4 At1g33450 840238 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.6 99.8 23.3 At5g18920 832010 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
51.8 99.8 212.3 At3g48520 824011 CYP94B3 member of CYP94B O.I. C.G. H.G.
51.5 99.8 66.7 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
50.1 99.8 47.3 At1g48260 841246 CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17). O.I. C.G. H.G.
50.1 99.8 37.1 At4g05110 825856 equilibrative nucleoside transporter, putative (ENT6) F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPF O.I. C.G. H.G.
50.0 99.8 43.9 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
48.8 99.8 57.4 At5g52070 835283 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.7 99.8 25.0 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
48.0 99.8 9.1 At5g27170 832775 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast O.I. C.G. H.G.
47.9 99.8 174.0 At4g27652 828877 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
46.9 99.8 12.1 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
46.5 99.8 81.9 At3g47780 823932 ATATH6 member of ATH subfamily O.I. C.G. H.G.
46.2 99.8 288.1 At3g49780 824140 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. O.I. C.G. H.G.
45.9 99.8 151.8 At3g23250 821904 MYB15 (MYB DOMAIN PROTEIN 15) Member of the R2R3 factor gene family. O.I. C.G. H.G.
45.7 99.8 80.4 At2g45290 819137 transketolase, putative F:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAP O.I. C.G. H.G.
44.6 99.8 53.8 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
44.1 99.8 24.0 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
44.0 99.8 225.7 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
43.0 99.8 26.6 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
42.5 99.8 126.4 At2g22880 816819 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
42.3 99.8 215.8 At1g52890 841722 ANAC019 (Arabidopsis NAC domain containing protein 19) encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro. O.I. C.G. H.G.
41.0 99.8 30.6 At5g63770 836497 ATDGK2 (Diacylglycerol kinase 2) a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold. O.I. C.G. H.G.
40.7 99.8 49.7 At1g44910 841057 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
40.6 99.8 50.9 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
40.4 99.8 301.5 At3g45970 823740 ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
40.4 99.8 153.4 At5g55050 835596 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
40.4 99.8 50.1 At5g51480 835222 SKS2 (SKU5 SIMILAR 2) F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA O.I. C.G. H.G.
40.4 99.8 27.9 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA O.I. C.G. H.G.
40.1 99.8 60.8 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
38.7 99.8 83.5 At5g15640 831418 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPO O.I. C.G. H.G.
38.3 99.8 24.6 At4g15480 827220 UGT84A1 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
38.2 99.8 72.3 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
37.8 99.8 99.0 At2g44370 819044 DC1 domain-containing protein F:unknown;P:unknown;C:unknown;POMF O.I. C.G. H.G.
37.3 99.7 167.5 At5g12020 831075 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM O.I. C.G. H.G.
37.1 99.7 23.6 At4g00390 828200 transcription regulator F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA O.I. C.G. H.G.
36.8 99.7 48.4 At4g33985 829545 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
36.8 99.7 42.9 At1g60080 842303 3' exoribonuclease family domain 1-containing protein F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPB O.I. C.G. H.G.
36.5 99.7 145.7 At2g45240 819132 MAP1A (METHIONINE AMINOPEPTIDASE 1A) Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development. O.I. C.G. H.G.
35.8 99.7 33.1 At1g33460 3766895 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
35.7 99.7 125.1 At5g20050 832127 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
35.7 99.7 47.4 At1g66400 842958 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV O.I. C.G. H.G.
35.5 99.7 336.9 At2g22470 816779 AGP2 (ARABINOGALACTAN PROTEIN 2) Encodes arabinogalactan-protein (AGP2). O.I. C.G. H.G.
35.2 99.7 311.6 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
35.0 99.7 27.0 At4g11030 826704 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV O.I. C.G. H.G.
33.8 99.7 365.7 At3g17820 821050 ATGSKB6 encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium O.I. C.G. H.G.
33.7 99.7 33.6 At1g69480 843280 EXS family protein / ERD1/XPR1/SYG1 family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB O.I. C.G. H.G.
33.2 99.7 46.8 At5g61890 836310 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
33.0 99.7 151.2 At3g61190 825291 BAP1 (BON ASSOCIATION PROTEIN 1) Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis. O.I. C.G. H.G.
32.7 99.7 28.1 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
32.3 99.7 143.6 At2g03820 814908 nonsense-mediated mRNA decay NMD3 family protein F:molecular_function unknown;P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;C:cellular_component unknown;MFOPA O.I. C.G. H.G.
32.1 99.7 343.1 At1g51680 841593 4CL1 (4-COUMARATE:COA LIGASE 1) encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate. O.I. C.G. H.G.
31.7 99.7 25.2 At1g63040 3767616 - a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
31.6 99.7 68.2 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
31.4 99.7 79.6 At2g45860 819194 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.4 99.7 26.8 At3g51530 824316 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
31.2 99.7 16.0 At3g29220 822576 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
31.0 99.7 102.4 At1g15420 838113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
31.0 99.7 25.3 At3g17110 3768803 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
30.8 99.7 73.5 At1g23410 838949 ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA) F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB O.I. C.G. H.G.
30.5 99.7 163.5 At2g27970 817341 CKS2 (CDK-subunit 2) F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOP O.I. C.G. H.G.
30.1 99.7 230.8 At5g16970 831560 AT-AER (alkenal reductase) encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls O.I. C.G. H.G.
30.1 99.7 48.9 At3g16860 820941 COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR) F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
30.0 99.7 248.3 At2g37970 818374 SOUL-1 F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
810.9	100.0	136.8	At2g21510	816690	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
374.6	100.0	44.1	At3g45220	823658	serpin, putative / serine protease inhibitor, putative	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
213.3	100.0	96.1	At1g63650	842669	EGL3 (ENHANCER OF GLABRA 3)	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	O.I.	C.G.	H.G.
182.5	100.0	59.8	At1g44060	3767336	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
180.6	100.0	145.1	At2g04770	3767978	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
164.9	100.0	46.0	At5g52020	835277	AP2 domain-containing protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
159.9	99.9	95.5	At3g45960	823739	ATEXLA3 (arabidopsis thaliana expansin-like a3)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
149.2	99.9	333.6	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
146.8	99.9	31.6	At2g03160	814845	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
138.5	99.9	323.4	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
125.8	99.9	41.8	At5g60470	836168	nucleic acid binding / transcription factor/ zinc ion binding	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
119.9	99.9	309.6	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
110.2	99.9	304.2	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
108.7	99.9	213.5	At4g15630	827240	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
98.1	99.9	191.0	At1g19610	838548	PDF1.4	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
93.8	99.9	128.3	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
91.3	99.9	241.9	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
91.0	99.9	53.6	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
91.0	99.9	22.4	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
86.4	99.9	349.2	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
86.0	99.9	224.9	At2g22860	816817	ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)	Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
84.3	99.9	227.2	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
82.0	99.9	137.7	At5g17650	831631	glycine/proline-rich protein	F:unknown;P:unknown;C:unknown;MFPBOVA	O.I.	C.G.	H.G.
73.5	99.9	98.1	At1g44900	841056	ATP binding / DNA binding / DNA-dependent ATPase	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
71.5	99.9	161.5	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
71.1	99.9	80.6	At2g18900	816406	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPA	O.I.	C.G.	H.G.
71.1	99.9	29.5	At2g27120	817254	TIL2 (TILTED 2)	Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	O.I.	C.G.	H.G.
68.3	99.9	34.1	At2g17620	816269	CYCB2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
68.0	99.9	38.6	At5g11410	831012	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
65.1	99.8	31.3	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
64.4	99.8	105.0	At5g51220	835197	ubiquinol-cytochrome C chaperone family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP	O.I.	C.G.	H.G.
60.3	99.8	106.4	At1g61820	842479	BGLU46 (BETA GLUCOSIDASE 46)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
58.5	99.8	59.4	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
56.0	99.8	105.7	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	O.I.	C.G.	H.G.
54.9	99.8	17.2	At3g48130	3769680	-	ribosomal protein L13 homolog	O.I.	C.G.	H.G.
54.3	99.8	66.4	At5g57100	835814	transporter-related	F:unknown;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
53.3	99.8	63.4	At1g33450	840238	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.6	99.8	23.3	At5g18920	832010	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
51.8	99.8	212.3	At3g48520	824011	CYP94B3	member of CYP94B	O.I.	C.G.	H.G.
51.5	99.8	66.7	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
50.1	99.8	47.3	At1g48260	841246	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	O.I.	C.G.	H.G.
50.1	99.8	37.1	At4g05110	825856	equilibrative nucleoside transporter, putative (ENT6)	F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPF	O.I.	C.G.	H.G.
50.0	99.8	43.9	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
48.8	99.8	57.4	At5g52070	835283	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.7	99.8	25.0	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
48.0	99.8	9.1	At5g27170	832775	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast	O.I.	C.G.	H.G.
47.9	99.8	174.0	At4g27652	828877	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
46.9	99.8	12.1	At1g66310	842948	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
46.5	99.8	81.9	At3g47780	823932	ATATH6	member of ATH subfamily	O.I.	C.G.	H.G.
46.2	99.8	288.1	At3g49780	824140	ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.	O.I.	C.G.	H.G.
45.9	99.8	151.8	At3g23250	821904	MYB15 (MYB DOMAIN PROTEIN 15)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
45.7	99.8	80.4	At2g45290	819137	transketolase, putative	F:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAP	O.I.	C.G.	H.G.
44.6	99.8	53.8	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
44.1	99.8	24.0	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
44.0	99.8	225.7	At3g47960	823951	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
43.0	99.8	26.6	At2g25320	817070	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
42.5	99.8	126.4	At2g22880	816819	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
42.3	99.8	215.8	At1g52890	841722	ANAC019 (Arabidopsis NAC domain containing protein 19)	encodes a NAC transcription factor whose expression is induced by drought, high salt, and abscisic acid. This gene binds to ERD1 promoter in vitro.	O.I.	C.G.	H.G.
41.0	99.8	30.6	At5g63770	836497	ATDGK2 (Diacylglycerol kinase 2)	a member of the diacylglycerol kinase gene family. Encodes a functional diacylglycerol kinase. Involved in root elongation and plant development. Gene expression is induced by wounding or cold.	O.I.	C.G.	H.G.
40.7	99.8	49.7	At1g44910	841057	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
40.6	99.8	50.9	At3g46770	823830	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.4	99.8	301.5	At3g45970	823740	ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
40.4	99.8	153.4	At5g55050	835596	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
40.4	99.8	50.1	At5g51480	835222	SKS2 (SKU5 SIMILAR 2)	F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOA	O.I.	C.G.	H.G.
40.4	99.8	27.9	At1g63210	842626	RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator	F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA	O.I.	C.G.	H.G.
40.1	99.8	60.8	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
38.7	99.8	83.5	At5g15640	831418	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPO	O.I.	C.G.	H.G.
38.3	99.8	24.6	At4g15480	827220	UGT84A1	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
38.2	99.8	72.3	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
37.8	99.8	99.0	At2g44370	819044	DC1 domain-containing protein	F:unknown;P:unknown;C:unknown;POMF	O.I.	C.G.	H.G.
37.3	99.7	167.5	At5g12020	831075	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	O.I.	C.G.	H.G.
37.1	99.7	23.6	At4g00390	828200	transcription regulator	F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA	O.I.	C.G.	H.G.
36.8	99.7	48.4	At4g33985	829545	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
36.8	99.7	42.9	At1g60080	842303	3' exoribonuclease family domain 1-containing protein	F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPB	O.I.	C.G.	H.G.
36.5	99.7	145.7	At2g45240	819132	MAP1A (METHIONINE AMINOPEPTIDASE 1A)	Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.	O.I.	C.G.	H.G.
35.8	99.7	33.1	At1g33460	3766895	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
35.7	99.7	125.1	At5g20050	832127	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
35.7	99.7	47.4	At1g66400	842958	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MFPOBV	O.I.	C.G.	H.G.
35.5	99.7	336.9	At2g22470	816779	AGP2 (ARABINOGALACTAN PROTEIN 2)	Encodes arabinogalactan-protein (AGP2).	O.I.	C.G.	H.G.
35.2	99.7	311.6	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
35.0	99.7	27.0	At4g11030	826704	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
33.8	99.7	365.7	At3g17820	821050	ATGSKB6	encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammonium	O.I.	C.G.	H.G.
33.7	99.7	33.6	At1g69480	843280	EXS family protein / ERD1/XPR1/SYG1 family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOB	O.I.	C.G.	H.G.
33.2	99.7	46.8	At5g61890	836310	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
33.0	99.7	151.2	At3g61190	825291	BAP1 (BON ASSOCIATION PROTEIN 1)	Encodes a protein with a C2 domain that binds to BON1 in yeast two hybrid analyses. Its ability to bind to phospholipids is enhanced by calcium ions. Involved in maintaining cell homeostasis.	O.I.	C.G.	H.G.
32.7	99.7	28.1	At3g60120	825182	BGLU27 (BETA GLUCOSIDASE 27)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
32.3	99.7	143.6	At2g03820	814908	nonsense-mediated mRNA decay NMD3 family protein	F:molecular_function unknown;P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay;C:cellular_component unknown;MFOPA	O.I.	C.G.	H.G.
32.1	99.7	343.1	At1g51680	841593	4CL1 (4-COUMARATE:COA LIGASE 1)	encodes an isoform of 4-coumarate:CoA ligase (4CL), which is involved in the last step of the general phenylpropanoid pathway. In addition to 4-coumarate, it also converts ferulate. The catalytic efficiency was in the following (descending) order: p-coumaric acid, ferulic acid, caffeic acid and 5-OH-ferulic acid. At4CL1 was unable to use sinapic acid as substrate.	O.I.	C.G.	H.G.
31.7	99.7	25.2	At1g63040	3767616	-	a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
31.6	99.7	68.2	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
31.4	99.7	79.6	At2g45860	819194	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.4	99.7	26.8	At3g51530	824316	F-box family protein	F:molecular_function unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
31.2	99.7	16.0	At3g29220	822576	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
31.0	99.7	102.4	At1g15420	838113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
31.0	99.7	25.3	At3g17110	3768803	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
30.8	99.7	73.5	At1g23410	838949	ubiquitin extension protein, putative / 40S ribosomal protein S27A (RPS27aA)	F:protein binding, structural constituent of ribosome;P:protein ubiquitination during ubiquitin-dependent protein catabolic process, protein modification process, translation;C:cytosolic small ribosomal subunit, plasma membrane;MPOFVAB	O.I.	C.G.	H.G.
30.5	99.7	163.5	At2g27970	817341	CKS2 (CDK-subunit 2)	F:cyclin-dependent protein kinase regulator activity, cyclin-dependent protein kinase activity;P:cell cycle;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
30.1	99.7	230.8	At5g16970	831560	AT-AER (alkenal reductase)	encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls	O.I.	C.G.	H.G.
30.1	99.7	48.9	At3g16860	820941	COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
30.0	99.7	248.3	At2g37970	818374	SOUL-1	F:binding;P:red or far red light signaling pathway, N-terminal protein myristoylation;C:plasma membrane, vacuole;OBPMA	O.I.	C.G.	H.G.

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GSM ID	GSM133812
Assay name	Diamond_A-1-Diamo-met_SLD
GSE experiment	GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Microarray experiments to specifically-expressed genes

GSM ID GSM133812 Assay name Diamond_A-1-Diamo-met_SLD GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

GSM ID GSM133812

Assay name Diamond_A-1-Diamo-met_SLD

GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)