CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133810

Assay name Diamond_A-3-Diamo-fum_SLD

GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
474.1 100.0 125.7 At2g43000 818902 anac042 (Arabidopsis NAC domain containing protein 42) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
415.9 100.0 90.2 At1g44060 3767336 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
331.3 100.0 41.4 At3g45220 823658 serpin, putative / serine protease inhibitor, putative F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF O.I. C.G. H.G.
269.2 100.0 55.2 At5g11210 830991 ATGLR2.5 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
264.9 100.0 42.4 At2g03160 814845 ASK19 (ARABIDOPSIS SKP1-LIKE 19) F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
221.8 100.0 226.4 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA O.I. C.G. H.G.
205.4 100.0 108.2 At3g45960 823739 ATEXLA3 (arabidopsis thaliana expansin-like a3) member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
203.6 100.0 68.6 At2g21510 816690 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
192.5 100.0 51.7 At5g60470 836168 nucleic acid binding / transcription factor/ zinc ion binding F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF O.I. C.G. H.G.
174.4 100.0 86.9 At1g63650 842669 EGL3 (ENHANCER OF GLABRA 3) Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. O.I. C.G. H.G.
173.4 100.0 333.5 At2g12300 3768253 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
160.3 99.9 358.0 At3g30396 3769077 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
150.7 99.9 69.0 At4g30430 829166 TET9 (TETRASPANIN9) Member of TETRASPANIN family O.I. C.G. H.G.
147.7 99.9 331.9 At2g10640 3767859 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
147.1 99.9 333.3 At2g12240 3768292 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
145.4 99.9 170.4 At5g05340 830416 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM O.I. C.G. H.G.
143.4 99.9 129.3 At2g04770 3767978 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
136.5 99.9 95.7 At1g44130 841016 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF O.I. C.G. H.G.
124.8 99.9 39.1 At2g27120 817254 TIL2 (TILTED 2) Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1. O.I. C.G. H.G.
112.2 99.9 127.2 At3g47780 823932 ATATH6 member of ATH subfamily O.I. C.G. H.G.
111.9 99.9 37.9 At5g52020 835277 AP2 domain-containing protein encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
107.1 99.9 50.9 At3g60120 825182 BGLU27 (BETA GLUCOSIDASE 27) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
100.8 99.9 48.2 At1g51270 841550 structural molecule/ transmembrane receptor F:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFO O.I. C.G. H.G.
96.5 99.9 44.6 At3g17110 3768803 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
93.9 99.9 117.6 At4g25530 828658 FWA Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation. O.I. C.G. H.G.
93.5 99.9 22.8 At1g45100 841077 polyadenylate-binding protein, putative / PABP, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB O.I. C.G. H.G.
93.3 99.9 129.7 At5g15640 831418 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPO O.I. C.G. H.G.
92.9 99.9 77.6 At5g24850 832554 CRY3 (cryptochrome 3) Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome. O.I. C.G. H.G.
90.7 99.9 36.9 At1g68795 843211 CLE12 (CLAVATA3/ESR-RELATED 12) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. O.I. C.G. H.G.
89.8 99.9 129.9 At1g61820 842479 BGLU46 (BETA GLUCOSIDASE 46) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
89.8 99.9 19.4 At4g18990 827635 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOA O.I. C.G. H.G.
87.4 99.9 75.4 At1g69920 843328 ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
85.1 99.9 43.2 At5g11410 831012 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
78.0 99.9 170.4 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
76.3 99.9 210.8 At5g55050 835596 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
75.3 99.9 82.9 At2g18900 816406 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPA O.I. C.G. H.G.
73.8 99.9 175.9 At4g15630 827240 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
72.2 99.9 110.7 At2g02860 814817 SUT2 (SUCROSE TRANSPORTER 2) encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding. O.I. C.G. H.G.
72.2 99.9 56.8 At1g48260 841246 CIPK17 (CBL-INTERACTING PROTEIN KINASE 17) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17). O.I. C.G. H.G.
70.7 99.9 44.1 At4g05110 825856 equilibrative nucleoside transporter, putative (ENT6) F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPF O.I. C.G. H.G.
68.2 99.9 239.3 At2g27080 817250 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
68.1 99.9 34.0 At2g17620 816269 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
67.1 99.8 31.8 At5g46590 834702 anac096 (Arabidopsis NAC domain containing protein 96) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
66.3 99.8 65.1 At3g46770 823830 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P O.I. C.G. H.G.
65.6 99.8 104.5 At1g67980 843126 CCoAMT Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase. O.I. C.G. H.G.
65.5 99.8 22.3 At5g45220 834558 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P O.I. C.G. H.G.
65.0 99.8 65.5 At5g61890 836310 AP2 domain-containing transcription factor family protein encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
62.4 99.8 28.3 At3g61340 825306 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
62.2 99.8 62.8 At1g65730 842884 YSL7 (YELLOW STRIPE LIKE 7) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.
61.5 99.8 89.7 At1g44900 841056 ATP binding / DNA binding / DNA-dependent ATPase F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV O.I. C.G. H.G.
60.8 99.8 35.2 At1g42705 3767274 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
60.7 99.8 83.2 At2g22475 816780 GEM (GL2-EXPRESSION MODULATOR) Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters. O.I. C.G. H.G.
59.3 99.8 22.0 At3g29220 822576 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.0 99.8 99.6 At5g51220 835197 ubiquinol-cytochrome C chaperone family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP O.I. C.G. H.G.
56.8 99.8 34.4 At4g11030 826704 long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV O.I. C.G. H.G.
53.8 99.8 57.2 At1g44910 841057 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA O.I. C.G. H.G.
52.4 99.8 44.7 At1g51620 841587 protein kinase family protein F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
51.8 99.8 85.6 At2g45290 819137 transketolase, putative F:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAP O.I. C.G. H.G.
51.7 99.8 270.1 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
51.5 99.8 55.7 At1g51380 841562 eukaryotic translation initiation factor 4A, putative / eIF-4A, putative F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
51.3 99.8 25.9 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
51.2 99.8 44.4 At2g38340 818414 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
50.8 99.8 12.6 At1g66310 842948 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
50.2 99.8 94.0 At5g24760 832545 alcohol dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV O.I. C.G. H.G.
49.3 99.8 57.6 At5g52070 835283 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.9 99.8 81.8 At2g03800 814906 GEK1 (GEKO1) encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype. O.I. C.G. H.G.
48.3 99.8 92.1 At1g36240 840530 60S ribosomal protein L30 (RPL30A) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB O.I. C.G. H.G.
47.5 99.8 34.6 At1g22090 838814 emb2204 (embryo defective 2204) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
47.2 99.8 95.5 At3g48850 824046 mitochondrial phosphate transporter, putative F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO O.I. C.G. H.G.
46.7 99.8 34.0 At2g22560 816788 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV O.I. C.G. H.G.
46.2 99.8 168.1 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
45.6 99.8 27.4 At2g25320 817070 - F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
45.4 99.8 55.7 At3g26200 822221 CYP71B22 putative cytochrome P450 O.I. C.G. H.G.
43.3 99.8 256.7 At4g25810 828686 XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6) xyloglucan endotransglycosylase-related protein (XTR6) O.I. C.G. H.G.
43.2 99.8 76.0 At3g32900 823050 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
43.1 99.8 223.2 At3g47960 823951 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO O.I. C.G. H.G.
43.1 99.8 26.1 At4g15480 827220 UGT84A1 Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity. O.I. C.G. H.G.
43.0 99.8 81.1 At5g25270 832599 - F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVP O.I. C.G. H.G.
42.9 99.8 25.4 At4g00390 828200 transcription regulator F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA O.I. C.G. H.G.
42.4 99.8 28.0 At2g45280 819136 ATRAD51C Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions. O.I. C.G. H.G.
42.3 99.8 106.0 At1g32840 840178 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.3 99.8 27.3 At4g31970 829327 CYP82C2 member of CYP82C O.I. C.G. H.G.
41.7 99.8 123.4 At2g04000 814926 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
41.1 99.8 55.7 At1g33450 840238 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
40.6 99.8 270.0 At3g49780 824140 ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR) Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype. O.I. C.G. H.G.
40.1 99.8 60.7 At1g60030 842297 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV O.I. C.G. H.G.
39.3 99.8 30.1 At5g20460 832168 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
38.9 99.8 19.7 At2g32660 817826 AtRLP22 (Receptor Like Protein 22) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
37.5 99.7 59.4 At1g33560 840250 ADR1 (ACTIVATED DISEASE RESISTANCE 1) Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens. O.I. C.G. H.G.
37.4 99.7 118.5 At2g22880 816819 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
37.4 99.7 93.2 At4g03320 827972 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) F:unknown;P:unknown;C:unknown;PB O.I. C.G. H.G.
37.1 99.7 77.4 At1g43860 840982 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;MOFAPB O.I. C.G. H.G.
37.1 99.7 50.7 At4g37770 829933 ACS8 Encodes an auxin inducible ACC synthase. O.I. C.G. H.G.
37.0 99.7 81.9 At1g65690 842880 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
36.9 99.7 56.4 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO O.I. C.G. H.G.
36.9 99.7 27.2 At1g63040 3767616 - a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY. O.I. C.G. H.G.
36.7 99.7 37.7 At1g45180 841086 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB O.I. C.G. H.G.
36.4 99.7 69.9 At1g44835 841048 YbaK/prolyl-tRNA synthetase family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPF O.I. C.G. H.G.
36.1 99.7 33.3 At1g33460 3766895 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
35.9 99.7 96.9 At5g53590 835441 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PMOFB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
474.1	100.0	125.7	At2g43000	818902	anac042 (Arabidopsis NAC domain containing protein 42)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
415.9	100.0	90.2	At1g44060	3767336	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
331.3	100.0	41.4	At3g45220	823658	serpin, putative / serine protease inhibitor, putative	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF	O.I.	C.G.	H.G.
269.2	100.0	55.2	At5g11210	830991	ATGLR2.5	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
264.9	100.0	42.4	At2g03160	814845	ASK19 (ARABIDOPSIS SKP1-LIKE 19)	F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
221.8	100.0	226.4	At5g17650	831631	glycine/proline-rich protein	F:unknown;P:unknown;C:unknown;MFPBOVA	O.I.	C.G.	H.G.
205.4	100.0	108.2	At3g45960	823739	ATEXLA3 (arabidopsis thaliana expansin-like a3)	member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
203.6	100.0	68.6	At2g21510	816690	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
192.5	100.0	51.7	At5g60470	836168	nucleic acid binding / transcription factor/ zinc ion binding	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPF	O.I.	C.G.	H.G.
174.4	100.0	86.9	At1g63650	842669	EGL3 (ENHANCER OF GLABRA 3)	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	O.I.	C.G.	H.G.
173.4	100.0	333.5	At2g12300	3768253	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
160.3	99.9	358.0	At3g30396	3769077	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
150.7	99.9	69.0	At4g30430	829166	TET9 (TETRASPANIN9)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
147.7	99.9	331.9	At2g10640	3767859	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
147.1	99.9	333.3	At2g12240	3768292	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
145.4	99.9	170.4	At5g05340	830416	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBM	O.I.	C.G.	H.G.
143.4	99.9	129.3	At2g04770	3767978	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
136.5	99.9	95.7	At1g44130	841016	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMF	O.I.	C.G.	H.G.
124.8	99.9	39.1	At2g27120	817254	TIL2 (TILTED 2)	Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.	O.I.	C.G.	H.G.
112.2	99.9	127.2	At3g47780	823932	ATATH6	member of ATH subfamily	O.I.	C.G.	H.G.
111.9	99.9	37.9	At5g52020	835277	AP2 domain-containing protein	encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
107.1	99.9	50.9	At3g60120	825182	BGLU27 (BETA GLUCOSIDASE 27)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
100.8	99.9	48.2	At1g51270	841550	structural molecule/ transmembrane receptor	F:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFO	O.I.	C.G.	H.G.
96.5	99.9	44.6	At3g17110	3768803	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
93.9	99.9	117.6	At4g25530	828658	FWA	Encodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.	O.I.	C.G.	H.G.
93.5	99.9	22.8	At1g45100	841077	polyadenylate-binding protein, putative / PABP, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOB	O.I.	C.G.	H.G.
93.3	99.9	129.7	At5g15640	831418	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPO	O.I.	C.G.	H.G.
92.9	99.9	77.6	At5g24850	832554	CRY3 (cryptochrome 3)	Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.	O.I.	C.G.	H.G.
90.7	99.9	36.9	At1g68795	843211	CLE12 (CLAVATA3/ESR-RELATED 12)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	O.I.	C.G.	H.G.
89.8	99.9	129.9	At1g61820	842479	BGLU46 (BETA GLUCOSIDASE 46)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
89.8	99.9	19.4	At4g18990	827635	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOA	O.I.	C.G.	H.G.
87.4	99.9	75.4	At1g69920	843328	ATGSTU12 (GLUTATHIONE S-TRANSFERASE TAU 12)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
85.1	99.9	43.2	At5g11410	831012	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
78.0	99.9	170.4	At1g19610	838548	PDF1.4	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
76.3	99.9	210.8	At5g55050	835596	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
75.3	99.9	82.9	At2g18900	816406	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPA	O.I.	C.G.	H.G.
73.8	99.9	175.9	At4g15630	827240	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
72.2	99.9	110.7	At2g02860	814817	SUT2 (SUCROSE TRANSPORTER 2)	encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.	O.I.	C.G.	H.G.
72.2	99.9	56.8	At1g48260	841246	CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).	O.I.	C.G.	H.G.
70.7	99.9	44.1	At4g05110	825856	equilibrative nucleoside transporter, putative (ENT6)	F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPF	O.I.	C.G.	H.G.
68.2	99.9	239.3	At2g27080	817250	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
68.1	99.9	34.0	At2g17620	816269	CYCB2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
67.1	99.8	31.8	At5g46590	834702	anac096 (Arabidopsis NAC domain containing protein 96)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.3	99.8	65.1	At3g46770	823830	transcriptional factor B3 family protein	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;P	O.I.	C.G.	H.G.
65.6	99.8	104.5	At1g67980	843126	CCoAMT	Encodes S-adenosyl-L-methionine: transcaffeoyl Coenzyme A 3-O-methyltransferase.	O.I.	C.G.	H.G.
65.5	99.8	22.3	At5g45220	834558	Toll-Interleukin-Resistance (TIR) domain-containing protein	F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;P	O.I.	C.G.	H.G.
65.0	99.8	65.5	At5g61890	836310	AP2 domain-containing transcription factor family protein	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
62.4	99.8	28.3	At3g61340	825306	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
62.2	99.8	62.8	At1g65730	842884	YSL7 (YELLOW STRIPE LIKE 7)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.
61.5	99.8	89.7	At1g44900	841056	ATP binding / DNA binding / DNA-dependent ATPase	F:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
60.8	99.8	35.2	At1g42705	3767274	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
60.7	99.8	83.2	At2g22475	816780	GEM (GL2-EXPRESSION MODULATOR)	Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.	O.I.	C.G.	H.G.
59.3	99.8	22.0	At3g29220	822576	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.0	99.8	99.6	At5g51220	835197	ubiquinol-cytochrome C chaperone family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP	O.I.	C.G.	H.G.
56.8	99.8	34.4	At4g11030	826704	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	F:catalytic activity;P:fatty acid biosynthetic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
53.8	99.8	57.2	At1g44910	841057	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
52.4	99.8	44.7	At1g51620	841587	protein kinase family protein	F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
51.8	99.8	85.6	At2g45290	819137	transketolase, putative	F:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAP	O.I.	C.G.	H.G.
51.7	99.8	270.1	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
51.5	99.8	55.7	At1g51380	841562	eukaryotic translation initiation factor 4A, putative / eIF-4A, putative	F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
51.3	99.8	25.9	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
51.2	99.8	44.4	At2g38340	818414	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
50.8	99.8	12.6	At1g66310	842948	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
50.2	99.8	94.0	At5g24760	832545	alcohol dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAV	O.I.	C.G.	H.G.
49.3	99.8	57.6	At5g52070	835283	agenet domain-containing protein	F:RNA binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.9	99.8	81.8	At2g03800	814906	GEK1 (GEKO1)	encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.	O.I.	C.G.	H.G.
48.3	99.8	92.1	At1g36240	840530	60S ribosomal protein L30 (RPL30A)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPB	O.I.	C.G.	H.G.
47.5	99.8	34.6	At1g22090	838814	emb2204 (embryo defective 2204)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.2	99.8	95.5	At3g48850	824046	mitochondrial phosphate transporter, putative	F:binding;P:transport;C:mitochondrial inner membrane, chloroplast, membrane;MFPO	O.I.	C.G.	H.G.
46.7	99.8	34.0	At2g22560	816788	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOBFPAV	O.I.	C.G.	H.G.
46.2	99.8	168.1	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
45.6	99.8	27.4	At2g25320	817070	-	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
45.4	99.8	55.7	At3g26200	822221	CYP71B22	putative cytochrome P450	O.I.	C.G.	H.G.
43.3	99.8	256.7	At4g25810	828686	XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)	xyloglucan endotransglycosylase-related protein (XTR6)	O.I.	C.G.	H.G.
43.2	99.8	76.0	At3g32900	823050	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
43.1	99.8	223.2	At3g47960	823951	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFO	O.I.	C.G.	H.G.
43.1	99.8	26.1	At4g15480	827220	UGT84A1	Encodes a protein that might have sinapic acid:UDP-glucose glucosyltransferase activity.	O.I.	C.G.	H.G.
43.0	99.8	81.1	At5g25270	832599	-	F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;OMBFVP	O.I.	C.G.	H.G.
42.9	99.8	25.4	At4g00390	828200	transcription regulator	F:transcription regulator activity;P:unknown;C:nucleolus;OMBFPVA	O.I.	C.G.	H.G.
42.4	99.8	28.0	At2g45280	819136	ATRAD51C	Encodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.	O.I.	C.G.	H.G.
42.3	99.8	106.0	At1g32840	840178	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.3	99.8	27.3	At4g31970	829327	CYP82C2	member of CYP82C	O.I.	C.G.	H.G.
41.7	99.8	123.4	At2g04000	814926	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
41.1	99.8	55.7	At1g33450	840238	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
40.6	99.8	270.0	At3g49780	824140	ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)	Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.	O.I.	C.G.	H.G.
40.1	99.8	60.7	At1g60030	842297	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAV	O.I.	C.G.	H.G.
39.3	99.8	30.1	At5g20460	832168	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
38.9	99.8	19.7	At2g32660	817826	AtRLP22 (Receptor Like Protein 22)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
37.5	99.7	59.4	At1g33560	840250	ADR1 (ACTIVATED DISEASE RESISTANCE 1)	Encodes a NBS-LRR disease resistance protein that possesses N-terminal kinase subdomains. Activation tagged mutant of ADR1 showed elevated levels of SA and reactive oxygen species in addition to number of defense gene transcripts. Exhibits resistance to number of microbial pathogens.	O.I.	C.G.	H.G.
37.4	99.7	118.5	At2g22880	816819	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
37.4	99.7	93.2	At4g03320	827972	tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV)	F:unknown;P:unknown;C:unknown;PB	O.I.	C.G.	H.G.
37.1	99.7	77.4	At1g43860	840982	transcription factor	F:transcription factor activity;P:regulation of transcription;C:unknown;MOFAPB	O.I.	C.G.	H.G.
37.1	99.7	50.7	At4g37770	829933	ACS8	Encodes an auxin inducible ACC synthase.	O.I.	C.G.	H.G.
37.0	99.7	81.9	At1g65690	842880	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
36.9	99.7	56.4	At3g17609	821027	HYH (HY5-HOMOLOG)	F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO	O.I.	C.G.	H.G.
36.9	99.7	27.2	At1g63040	3767616	-	a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.	O.I.	C.G.	H.G.
36.7	99.7	37.7	At1g45180	841086	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVB	O.I.	C.G.	H.G.
36.4	99.7	69.9	At1g44835	841048	YbaK/prolyl-tRNA synthetase family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPF	O.I.	C.G.	H.G.
36.1	99.7	33.3	At1g33460	3766895	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
35.9	99.7	96.9	At5g53590	835441	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.

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GSM ID	GSM133810
Assay name	Diamond_A-3-Diamo-fum_SLD
GSE experiment	GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Microarray experiments to specifically-expressed genes

GSM ID GSM133810 Assay name Diamond_A-3-Diamo-fum_SLD GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

GSM ID GSM133810

Assay name Diamond_A-3-Diamo-fum_SLD

GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)