Microarray experiments to specifically-expressed genes

GSM ID GSM133809
Assay name Diamond_A-2-Diamo-fum_SLD
GSE experiment GSE5735: Identification of Core Genes Regulating Plant Programmed Cell Death (PCD)

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
258.2100.036.6At3g45220823658serpin, putative / serine protease inhibitor, putativeF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
254.8100.070.6At1g440603767336transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
225.8100.072.2At2g21510816690DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
206.3100.082.9At2g43000818902anac042 (Arabidopsis NAC domain containing protein 42)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
184.3100.050.6At5g60470836168nucleic acid binding / transcription factor/ zinc ion bindingF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;MOPFO.I.C.G.H.G.
179.3100.0203.6At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
160.399.995.6At3g45960823739ATEXLA3 (arabidopsis thaliana expansin-like a3)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
156.099.9343.3At2g122403768292transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
155.699.942.0At5g11210830991ATGLR2.5member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
155.399.9315.5At2g123003768253transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
145.599.9341.1At3g303963769077transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
140.099.9167.2At5g05340830416peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:apoplast, cell wall;PFOBMO.I.C.G.H.G.
139.699.966.4At4g30430829166TET9 (TETRASPANIN9)Member of TETRASPANIN familyO.I.C.G.H.G.
138.499.942.2At5g52020835277AP2 domain-containing proteinencodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
137.399.9320.0At2g106403767859transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
134.399.930.2At2g03160814845ASK19 (ARABIDOPSIS SKP1-LIKE 19)F:ubiquitin-protein ligase activity, protein binding;P:protein ubiquitination;C:cellular_component unknown;MPOFVO.I.C.G.H.G.
130.999.932.7At3g29220822576transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
114.099.9115.3At2g047703767978transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
110.999.969.3At1g63650842669EGL3 (ENHANCER OF GLABRA 3)Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.O.I.C.G.H.G.
98.699.9136.1At1g61820842479BGLU46 (BETA GLUCOSIDASE 46)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
95.799.979.5At5g61890836310AP2 domain-containing transcription factor family proteinencodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
93.699.9198.2At4g15630827240integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
89.299.9114.6At4g25530828658FWAEncodes a homeodomain-containing transcription factor that controls flowering. FWA is silenced in wild type plants and reverse of the imprinted silencing causes a late flowering phenotype. FWA gene contains two tandem repeats around the transcription start site that are necessary and sufficient for silencing via DNA methylation.O.I.C.G.H.G.
86.099.936.0At5g46590834702anac096 (Arabidopsis NAC domain containing protein 96)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
85.399.9267.7At2g27080817250harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
84.299.921.6At1g45100841077polyadenylate-binding protein, putative / PABP, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
82.699.974.5At1g44130841016nucellin protein, putativeF:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;POMFO.I.C.G.H.G.
80.799.9216.8At5g55050835596GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, lipase activity, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
79.999.936.9At2g17620816269CYCB2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
78.299.9101.2At1g44900841056ATP binding / DNA binding / DNA-dependent ATPaseF:DNA-dependent ATPase activity, DNA binding, ATP binding;P:DNA replication, DNA replication initiation;C:nucleus, chloroplast;MOBFPAVO.I.C.G.H.G.
74.799.9103.8At3g47780823932ATATH6member of ATH subfamilyO.I.C.G.H.G.
68.799.979.2At2g18900816406transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:unknown;BFMOPAO.I.C.G.H.G.
65.399.863.6At5g51480835222SKS2 (SKU5 SIMILAR 2)F:oxidoreductase activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;FBPMOAO.I.C.G.H.G.
63.999.8107.3At5g15640831418mitochondrial substrate carrier family proteinF:binding;P:transport, mitochondrial transport;C:mitochondrion, mitochondrial inner membrane;MFPOO.I.C.G.H.G.
62.699.854.7At2g42360818837zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
62.199.836.9At5g11410831012protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
61.899.8194.5At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
58.499.837.6At3g60120825182BGLU27 (BETA GLUCOSIDASE 27)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFAO.I.C.G.H.G.
57.499.860.5At3g46770823830transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:cellular_component unknown;PO.I.C.G.H.G.
56.599.8145.0At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
55.599.849.8At1g48260841246CIPK17 (CBL-INTERACTING PROTEIN KINASE 17)Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.21), which has also been reported as a member of the CBL-interacting protein kinases (CIPK17).O.I.C.G.H.G.
54.499.8277.1At5g24660832538LSU2 (RESPONSE TO LOW SULFUR 2)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
54.399.826.4At3g61340825306F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
53.599.895.2At2g02860814817SUT2 (SUCROSE TRANSPORTER 2)encodes a sucrose transporter in sieve elements and a number of sink tissues and cell types. Gene expression is induced by wounding.O.I.C.G.H.G.
52.199.884.5At2g03800814906GEK1 (GEKO1)encodes a D-aminoacyl-tRNA deacylase. Involved in detoxification of D-aminoacyl-tRNA. Mutants also show ethanol-hypersensitive phenotype.O.I.C.G.H.G.
52.199.818.7At3g49770824139unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
49.899.831.5At1g630403767616-a pseudogene member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The translated product contains one AP2 domain. There are 17 members in this subfamily including TINY.O.I.C.G.H.G.
49.799.8398.7At2g22470816779AGP2 (ARABINOGALACTAN PROTEIN 2)Encodes arabinogalactan-protein (AGP2).O.I.C.G.H.G.
49.599.893.2At1g3624084053060S ribosomal protein L30 (RPL30A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
49.399.830.5At5g01380831895transcription factorF:transcription factor activity;P:regulation of transcription;C:unknown;MOFPBVAO.I.C.G.H.G.
48.699.824.4At2g27120817254TIL2 (TILTED 2)Encodes a protein with similarity to DNA polymerase epsilon catalytic subunit. Based on yeast two hybrid analysis, not predicted to be a subunit of the DNA polymerase epsilon complex. No phenotype observed in homozygous mutant embryos or plants but in combination with TIL1-1/til1-1 heterozygotes arrest earlier than til1 homozygotes suggesting TIL2 functions redundantly with TIL1.O.I.C.G.H.G.
48.199.853.9At1g51380841562eukaryotic translation initiation factor 4A, putative / eIF-4A, putativeF:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
48.099.8132.4At2g04000814926transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
48.099.874.0At2g22475816780GEM (GL2-EXPRESSION MODULATOR)Encodes GL2-expression modulator (GEM). Involved in the spatial control of cell division, patterning and differentiation of Arabidopsis root epidermal cells. GEM interacts with CDT1, a DNA replication protein and TTG1 (TRANSPARENT TESTA GLABRA1), a WD40-repeat protein involved in GL2-dependent cell fate decision. GEM seems to participate in the maintenance of a repressor histone H3 epigenetics status of the GL2 and CPC (CAPRICE) promoters.O.I.C.G.H.G.
46.999.839.7At1g69480843280EXS family protein / ERD1/XPR1/SYG1 family proteinF:molecular_function unknown;P:biological_process unknown;C:integral to membrane, plasma membrane;FMPOBO.I.C.G.H.G.
46.399.826.4At1g68795843211CLE12 (CLAVATA3/ESR-RELATED 12)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.C.G.H.G.
46.199.8109.8At5g53590835441auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
45.399.830.6At3g171103768803-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
44.899.853.9At5g24850832554CRY3 (cryptochrome 3)Binds flavin adenine dinucleotide and DNA. It does not have photolyase activity, and it is likely to act as photoreceptor. Closely related to Synechocystis cryptochrome.O.I.C.G.H.G.
44.499.8282.5At3g49780824140ATPSK4 (PHYTOSULFOKINE 4 PRECURSOR)Phytosulfokine 3 precursor, coding for a unique plant peptide growth factor. Plants overexpressing this gene (under a 35S promoter), develop normal cotyledons and hypocotyls but their growth, in particular that of their roots, was faster than that of wildtype.O.I.C.G.H.G.
43.699.860.3At1g68290843158ENDO 2 (endonuclease 2)Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.O.I.C.G.H.G.
42.199.835.9At1g334603766895transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
41.499.827.6At2g45280819136ATRAD51CEncodes a protein similar to RAD51C involved in double stranded break repair via homologous recombination. Sensitive to DSB induced by Mitomycin C and gamma irradiation, interacts with Atxrcc3 in yeast two-hybrid assay. Required for female meiosis but not critical for mitosis under normal conditions.O.I.C.G.H.G.
40.799.8217.1At3g47960823951proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport;C:plasma membrane, membrane;PMBFOO.I.C.G.H.G.
40.299.822.9At2g38720818454MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAVO.I.C.G.H.G.
40.099.830.3At1g51270841550structural molecule/ transmembrane receptorF:transmembrane receptor activity, structural molecule activity;P:signal transduction, innate immune response;C:intrinsic to membrane;PMFOO.I.C.G.H.G.
39.599.874.8At2g45290819137transketolase, putativeF:catalytic activity, transketolase activity;P:response to cadmium ion;C:chloroplast stroma, chloroplast;OBMFAPO.I.C.G.H.G.
39.399.8185.0At3g48520824011CYP94B3member of CYP94BO.I.C.G.H.G.
39.199.8328.5At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
38.699.838.4At1g51620841587protein kinase family proteinF:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
37.799.7213.6At5g13200831159GRAM domain-containing protein / ABA-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
36.999.724.6At2g21930816729F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.999.7233.8At4g25810828686XTR6 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 6)xyloglucan endotransglycosylase-related protein (XTR6)O.I.C.G.H.G.
35.499.712.2At4g18990827635xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOAO.I.C.G.H.G.
34.599.748.2At5g52070835283agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
34.599.729.5At1g22090838814emb2204 (embryo defective 2204)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
34.399.756.2At1g60030842297xanthine/uracil permease family proteinF:transmembrane transporter activity;P:transport;C:plasma membrane, membrane;BOMPFAVO.I.C.G.H.G.
34.199.7146.8At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
33.899.7140.1At2g45240819132MAP1A (METHIONINE AMINOPEPTIDASE 1A)Encodes a cytoplasmic MAP1 like methionine aminopeptidase which is involved in removing the N-terminal methionine from proteins. Induced mutants using RNAi technology which knocks out both MAP1 and MAP2 like genes show abnormal development.O.I.C.G.H.G.
33.799.7224.3At2g4486081909560S ribosomal protein L24, putativeF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome, nucleolus;MOAFPBO.I.C.G.H.G.
33.799.736.0At2g38340818414AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
33.699.7140.5At2g22860816817ATPSK2 (PHYTOSULFOKINE 2 PRECURSOR)Phytosulfokine 2 precursor, coding for a unique plant peptide growth factor.O.I.C.G.H.G.
33.499.783.7At5g24430832514calcium-dependent protein kinase, putative / CDPK, putativeF:in 6 functions;P:N-terminal protein myristoylation;C:plasma membrane;MOPFBVAO.I.C.G.H.G.
32.399.7110.1At2g22880816819VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
32.299.751.1At5g57100835814transporter-relatedF:unknown;P:unknown;C:membrane;PMFOBO.I.C.G.H.G.
31.999.750.4At3g16860820941COBL8 (COBRA-LIKE PROTEIN 8 PRECURSOR)F:unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
31.099.744.4At1g65730842884YSL7 (YELLOW STRIPE LIKE 7)Arabidopsis thaliana metal-nicotianamine transporter YSL4O.I.C.G.H.G.
30.799.715.3At5g45220834558Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
30.499.7219.0At5g18310831949unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
30.399.753.5At4g02880828150unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
30.199.7260.5At3g45970823740ATEXLA1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE A1)member of EXPANSIN-LIKE. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
29.999.7100.6At1g15420838113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
29.399.771.8At5g24760832545alcohol dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:chloroplast;BOPFMAVO.I.C.G.H.G.
29.399.728.4At4g05110825856equilibrative nucleoside transporter, putative (ENT6)F:nucleoside transmembrane transporter activity;P:transport;C:plasma membrane;MOPFO.I.C.G.H.G.
29.299.7339.7At3g17820821050ATGSKB6encodes a cytosolic glutamine synthetase, the enzyme has low affinity with substrate ammoniumO.I.C.G.H.G.
28.799.716.9At2g32660817826AtRLP22 (Receptor Like Protein 22)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
28.599.742.6At4g33985829545unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
28.299.7119.0At3g23250821904MYB15 (MYB DOMAIN PROTEIN 15)Member of the R2R3 factor gene family.O.I.C.G.H.G.
28.299.771.5At1g65690842880harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
28.099.7109.2At2g44970819105lipase-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;PBOFO.I.C.G.H.G.



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