CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133786

Assay name Brueggemann_A-4-Brueg-PpH_SLD

GSE experiment GSE5731: UV-B Responses in Light Grown Plants: Similarities to Biotic Stress

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
161.1 99.9 86.1 At3g45730 823715 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
94.0 99.9 111.3 At3g61630 825336 CRF6 (CYTOKININ RESPONSE FACTOR 6) CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves. O.I. C.G. H.G.
64.7 99.8 36.5 At2g18190 816332 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
36.5 99.7 71.6 At1g53870 841824 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.4 99.7 75.4 At1g09240 837444 NAS3 (NICOTIANAMINE SYNTHASE 3) Encodes a nicotianamine synthase. O.I. C.G. H.G.
35.3 99.7 75.9 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
29.7 99.7 17.8 At4g16880 827396 disease resistance protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM O.I. C.G. H.G.
28.4 99.7 15.1 At2g36750 818247 UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1) F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF O.I. C.G. H.G.
26.4 99.7 68.0 At5g46710 834714 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;POM O.I. C.G. H.G.
24.3 99.6 14.0 At3g26320 822236 CYP71B36 putative cytochrome P450 O.I. C.G. H.G.
24.2 99.6 63.8 At2g23840 816916 HNH endonuclease domain-containing protein F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA O.I. C.G. H.G.
23.0 99.6 143.3 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
20.2 99.6 35.2 At2g04070 814943 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
20.0 99.6 96.3 At5g06690 830558 WCRKC1 (WCRKC THIOREDOXIN 1) Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif. O.I. C.G. H.G.
19.7 99.6 72.8 At5g24470 832518 APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5) Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. O.I. C.G. H.G.
19.1 99.6 76.3 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. O.I. C.G. H.G.
19.1 99.6 42.4 At2g29320 817481 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
19.1 99.6 28.1 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase O.I. C.G. H.G.
19.0 99.5 128.9 At4g13830 827017 J20 (DNAJ-LIKE 20) DnaJ-like protein (J20); nuclear gene O.I. C.G. H.G.
18.8 99.5 18.3 At5g39030 833895 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
18.1 99.5 131.1 At2g45170 819125 AtATG8e Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes. O.I. C.G. H.G.
18.1 99.5 50.0 At4g31560 829283 HCF153 Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane. O.I. C.G. H.G.
18.1 99.5 49.8 At3g52070 824370 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
17.9 99.5 56.6 At5g39210 833917 CRR7 (CHLORORESPIRATORY REDUCTION 7) Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex. O.I. C.G. H.G.
17.7 99.5 50.7 At2g03310 814860 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
17.7 99.5 47.5 At2g16365 816133 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
17.0 99.5 24.4 At2g40340 818627 AP2 domain-containing transcription factor, putative (DRE2B) encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
16.9 99.5 177.2 At2g29670 817517 binding F:binding;P:unknown;C:chloroplast;PBOAM O.I. C.G. H.G.
16.5 99.5 132.9 At3g28740 822506 CYP81D1 Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions. O.I. C.G. H.G.
16.1 99.5 138.9 At5g63780 836498 SHA1 (shoot apical meristem arrest 1) Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage. O.I. C.G. H.G.
15.7 99.5 118.8 At1g70820 843419 phosphoglucomutase, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF O.I. C.G. H.G.
15.7 99.5 65.9 At4g10920 826690 KELP Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development. O.I. C.G. H.G.
15.7 99.5 63.2 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
15.6 99.5 49.5 At4g17370 827449 oxidoreductase family protein F:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP O.I. C.G. H.G.
15.5 99.5 28.9 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
15.3 99.4 25.9 At4g04490 825779 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
15.0 99.4 26.3 At1g09480 837471 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase O.I. C.G. H.G.
14.4 99.4 106.6 At2g30600 817610 BTB/POZ domain-containing protein F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF O.I. C.G. H.G.
14.3 99.4 34.1 At4g23260 828425 ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
14.2 99.4 103.5 At3g14660 820694 CYP72A13 putative cytochrome P450 O.I. C.G. H.G.
13.8 99.4 93.3 At5g43450 834365 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
13.5 99.4 47.0 At1g22630 838869 unknown protein F:unknown;P:unknown;C:chloroplast;MPBO O.I. C.G. H.G.
13.3 99.4 76.8 At1g64900 842798 CYP89A2 (CYTOCHROME P450 89A2) Encodes cytochrome P450 (CYP89A2). O.I. C.G. H.G.
13.1 99.4 50.1 At5g57170 835823 macrophage migration inhibitory factor family protein / MIF family protein F:unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPF O.I. C.G. H.G.
13.1 99.4 8.6 At1g59550 842246 UBX domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
13.0 99.4 158.1 At1g71030 843443 MYBL2 (ARABIDOPSIS MYB-LIKE 2) Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves. O.I. C.G. H.G.
13.0 99.4 73.6 At1g04350 839542 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase O.I. C.G. H.G.
13.0 99.4 13.2 At1g12730 837829 cell division cycle protein-related F:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO O.I. C.G. H.G.
12.8 99.3 108.3 At3g14690 820697 CYP72A15 putative cytochrome P450 O.I. C.G. H.G.
12.8 99.3 96.4 At3g26170 822218 CYP71B19 putative cytochrome P450 O.I. C.G. H.G.
12.6 99.3 82.4 At1g08550 837377 NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1) Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex O.I. C.G. H.G.
12.6 99.3 61.6 At1g22570 838863 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF O.I. C.G. H.G.
12.4 99.3 22.9 At4g16000 827284 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
12.3 99.3 53.6 At4g30690 829192 translation initiation factor 3 (IF-3) family protein F:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPF O.I. C.G. H.G.
12.3 99.3 33.0 At4g34138 829561 UGT73B1 (UDP-glucosyl transferase 73B1) F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF O.I. C.G. H.G.
12.1 99.3 77.7 At1g21130 838709 O-methyltransferase, putative F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
12.1 99.3 58.0 At5g28770 832990 BZO2H3 bZIP protein BZO2H3 mRNA, partial cds O.I. C.G. H.G.
12.0 99.3 17.2 At3g09050 820058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF O.I. C.G. H.G.
11.9 99.3 7.6 At4g13810 827015 AtRLP47 (Receptor Like Protein 47) F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV O.I. C.G. H.G.
11.8 99.3 57.3 At5g22300 832290 NIT4 (NITRILASE 4) encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway. O.I. C.G. H.G.
11.8 99.3 38.5 At5g50450 835113 zinc finger (MYND type) family protein F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
11.7 99.3 47.9 At2g36790 818251 UGT73C6 (UDP-glucosyl transferase 73C6) The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives. O.I. C.G. H.G.
11.7 99.3 12.9 At1g75250 843862 ATRL6 (ARABIDOPSIS RAD-LIKE 6) F:transcription factor activity;P:regulation of transcription;C:unknown;PMO O.I. C.G. H.G.
11.6 99.3 95.7 At1g05680 837075 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
11.6 99.3 20.6 At1g66910 843009 protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
11.5 99.3 19.4 At2g04790 815022 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
11.4 99.3 38.4 At5g13730 831218 SIG4 (SIGMA FACTOR 4) Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity. O.I. C.G. H.G.
11.2 99.2 43.8 At3g01920 821220 yrdC family protein F:unknown;P:biological_process unknown;C:unknown;BOAMFP O.I. C.G. H.G.
11.2 99.2 32.7 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
11.1 99.2 111.1 At4g04330 825753 unknown protein F:unknown;P:unknown;C:unknown;BPO O.I. C.G. H.G.
10.9 99.2 91.3 At3g03470 821250 CYP89A9 member of CYP89A O.I. C.G. H.G.
10.8 99.2 132.5 At5g16030 831460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA O.I. C.G. H.G.
10.8 99.2 75.3 At4g12310 826840 CYP706A5 member of CYP706A O.I. C.G. H.G.
10.8 99.2 10.9 At2g32290 817789 BAM6 (BETA-AMYLASE 6) F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO O.I. C.G. H.G.
10.6 99.2 92.5 At3g10970 820268 haloacid dehalogenase-like hydrolase family protein F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMF O.I. C.G. H.G.
10.5 99.2 186.8 At3g22370 821806 AOX1A (ALTERNATIVE OXIDASE 1A) Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited. O.I. C.G. H.G.
10.5 99.2 93.3 At3g19800 821517 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.5 99.2 41.9 At1g73750 843710 - F:unknown;P:unknown;C:unknown;PBMO O.I. C.G. H.G.
10.4 99.2 162.8 At4g27800 828893 protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1) F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVA O.I. C.G. H.G.
10.4 99.2 66.6 At4g03510 825654 RMA1 RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway. O.I. C.G. H.G.
10.4 99.2 36.2 At2g01870 814718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P O.I. C.G. H.G.
10.4 99.2 18.5 At3g26230 822224 CYP71B24 putative cytochrome P450 O.I. C.G. H.G.
10.4 99.2 16.9 At3g25740 822165 MAP1B (METHIONINE AMINOPEPTIDASE 1C) Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B. O.I. C.G. H.G.
10.3 99.2 154.0 At4g23890 828489 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMF O.I. C.G. H.G.
10.3 99.2 101.4 At5g27280 832786 zinc finger (DNL type) family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO O.I. C.G. H.G.
10.3 99.2 39.5 At1g66890 843007 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
10.0 99.2 10.7 At1g52550 841686 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POVBM O.I. C.G. H.G.
9.8 99.1 19.9 At3g62950 825470 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO O.I. C.G. H.G.
9.6 99.1 51.0 At2g21640 816702 - Encodes a protein of unknown function that is a marker for oxidative stress response. O.I. C.G. H.G.
9.6 99.1 32.9 At1g69730 843309 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA O.I. C.G. H.G.
9.5 99.1 99.4 At1g63800 842683 UBC5 (ubiquitin-conjugating enzyme 5) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV O.I. C.G. H.G.
9.2 99.1 78.1 At4g00895 827987 ATP synthase delta chain-related F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO O.I. C.G. H.G.
9.1 99.1 47.3 At1g79510 844289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO O.I. C.G. H.G.
9.0 99.1 169.5 At4g32340 829368 - F:unknown;P:unknown;C:unknown;MPBOFVA O.I. C.G. H.G.
9.0 99.1 50.7 At4g12980 826910 auxin-responsive protein, putative F:unknown;P:multicellular organismal development;C:membrane;PMFOB O.I. C.G. H.G.
9.0 99.1 36.1 At1g22500 838856 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB O.I. C.G. H.G.
9.0 99.1 29.6 At3g01660 821098 methyltransferase F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF O.I. C.G. H.G.
8.8 99.0 178.6 At4g13250 826942 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
8.8 99.0 23.2 At2g41120 818711 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
8.7 99.0 28.1 At2g37920 818368 emb1513 (embryo defective 1513) F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
161.1	99.9	86.1	At3g45730	823715	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
94.0	99.9	111.3	At3g61630	825336	CRF6 (CYTOKININ RESPONSE FACTOR 6)	CRF6 encodes one of the six cytokinin response factors. CRF5 belongs to the AP2/ERF superfamily of the transcriptional factors. CRF proteins rapidly relocalize to the nucleus in response to cytokinin. Analysis of loos-of-function mutants revealed that the CRFs function redundantly to regulate the development of embryos, cotyledons and leaves.	O.I.	C.G.	H.G.
64.7	99.8	36.5	At2g18190	816332	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:response to salt stress;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
36.5	99.7	71.6	At1g53870	841824	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.4	99.7	75.4	At1g09240	837444	NAS3 (NICOTIANAMINE SYNTHASE 3)	Encodes a nicotianamine synthase.	O.I.	C.G.	H.G.
35.3	99.7	75.9	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
29.7	99.7	17.8	At4g16880	827396	disease resistance protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOM	O.I.	C.G.	H.G.
28.4	99.7	15.1	At2g36750	818247	UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)	F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF	O.I.	C.G.	H.G.
26.4	99.7	68.0	At5g46710	834714	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;POM	O.I.	C.G.	H.G.
24.3	99.6	14.0	At3g26320	822236	CYP71B36	putative cytochrome P450	O.I.	C.G.	H.G.
24.2	99.6	63.8	At2g23840	816916	HNH endonuclease domain-containing protein	F:endonuclease activity, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OBVPA	O.I.	C.G.	H.G.
23.0	99.6	143.3	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
20.2	99.6	35.2	At2g04070	814943	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:transport, multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
20.0	99.6	96.3	At5g06690	830558	WCRKC1 (WCRKC THIOREDOXIN 1)	Encodes a thioredoxin (WCRKC1) localized in chloroplast stroma. Contains a WCRKC motif.	O.I.	C.G.	H.G.
19.7	99.6	72.8	At5g24470	832518	APRR5 (ARABIDOPSIS PSEUDO-RESPONSE REGULATOR 5)	Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light.	O.I.	C.G.	H.G.
19.1	99.6	76.3	At2g30250	817575	WRKY25	member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress.	O.I.	C.G.	H.G.
19.1	99.6	42.4	At2g29320	817481	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
19.1	99.6	28.1	At3g26220	822223	CYP71B3	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
19.0	99.5	128.9	At4g13830	827017	J20 (DNAJ-LIKE 20)	DnaJ-like protein (J20); nuclear gene	O.I.	C.G.	H.G.
18.8	99.5	18.3	At5g39030	833895	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
18.1	99.5	131.1	At2g45170	819125	AtATG8e	Involved in autophagy. Under nutrient starvation the protein localizes to autophagosomes.	O.I.	C.G.	H.G.
18.1	99.5	50.0	At4g31560	829283	HCF153	Encodes HCF153, a 15-KDa protein involved in the biogenesis of the cytochrome b(6)f complex. Associated with the thylakoid membrane.	O.I.	C.G.	H.G.
18.1	99.5	49.8	At3g52070	824370	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
17.9	99.5	56.6	At5g39210	833917	CRR7 (CHLORORESPIRATORY REDUCTION 7)	Encodes a protein of the chloroplastic NAD(P)H dehydrogenase complex (NDH Complex) involved in respiration, photosystem I (PSI) cyclic electron transport and CO2 uptake. The product of this gene appears to be essential for the stable formation of the NDH Complex.	O.I.	C.G.	H.G.
17.7	99.5	50.7	At2g03310	814860	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
17.7	99.5	47.5	At2g16365	816133	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
17.0	99.5	24.4	At2g40340	818627	AP2 domain-containing transcription factor, putative (DRE2B)	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
16.9	99.5	177.2	At2g29670	817517	binding	F:binding;P:unknown;C:chloroplast;PBOAM	O.I.	C.G.	H.G.
16.5	99.5	132.9	At3g28740	822506	CYP81D1	Encodes a member of the cytochrome p450 family. Expression is upregulated in response to cis-jasmonate treatment. Overexpression induces synthesis of volatile compounds that affect chemical ecology and insect interactions.	O.I.	C.G.	H.G.
16.1	99.5	138.9	At5g63780	836498	SHA1 (shoot apical meristem arrest 1)	Encodes SHA1 (shoot apical meristem arrest), a putative E3 ligase (a RING finger protein) required for post-embryonic SAM maintenance. The mutant sha1-1 shows a primary SAM-deficient phenotype at the adult stage.	O.I.	C.G.	H.G.
15.7	99.5	118.8	At1g70820	843419	phosphoglucomutase, putative / glucose phosphomutase, putative	F:intramolecular transferase activity, phosphotransferases;P:carbohydrate metabolic process;C:chloroplast;BOAMPF	O.I.	C.G.	H.G.
15.7	99.5	65.9	At4g10920	826690	KELP	Transcriptional co-activator. Forms homodimers or heterodimers with the kiwi protein. Both proteins are involved in gene activation during pathogen defense and plant development.	O.I.	C.G.	H.G.
15.7	99.5	63.2	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
15.6	99.5	49.5	At4g17370	827449	oxidoreductase family protein	F:electron carrier activity, oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAP	O.I.	C.G.	H.G.
15.5	99.5	28.9	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
15.3	99.4	25.9	At4g04490	825779	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
15.0	99.4	26.3	At1g09480	837471	cinnamyl-alcohol dehydrogenase family / CAD family	similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), Vigna unguiculata (gi:1854445), NOT a cinnamyl-alcohol dehydrogenase	O.I.	C.G.	H.G.
14.4	99.4	106.6	At2g30600	817610	BTB/POZ domain-containing protein	F:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVF	O.I.	C.G.	H.G.
14.3	99.4	34.1	At4g23260	828425	ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:response to abscisic acid stimulus;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
14.2	99.4	103.5	At3g14660	820694	CYP72A13	putative cytochrome P450	O.I.	C.G.	H.G.
13.8	99.4	93.3	At5g43450	834365	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
13.5	99.4	47.0	At1g22630	838869	unknown protein	F:unknown;P:unknown;C:chloroplast;MPBO	O.I.	C.G.	H.G.
13.3	99.4	76.8	At1g64900	842798	CYP89A2 (CYTOCHROME P450 89A2)	Encodes cytochrome P450 (CYP89A2).	O.I.	C.G.	H.G.
13.1	99.4	50.1	At5g57170	835823	macrophage migration inhibitory factor family protein / MIF family protein	F:unknown;P:inflammatory response, response to other organism;C:chloroplast;MOBPF	O.I.	C.G.	H.G.
13.1	99.4	8.6	At1g59550	842246	UBX domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
13.0	99.4	158.1	At1g71030	843443	MYBL2 (ARABIDOPSIS MYB-LIKE 2)	Encodes a putative myb family transcription factor. In contrast to most other myb-like proteins its myb domain consists of a single repeat. A proline-rich region potentially involved in transactivation is found in the C-terminal part of the protein. Its transcript accumulates mainly in leaves.	O.I.	C.G.	H.G.
13.0	99.4	73.6	At1g04350	839542	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase	O.I.	C.G.	H.G.
13.0	99.4	13.2	At1g12730	837829	cell division cycle protein-related	F:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPO	O.I.	C.G.	H.G.
12.8	99.3	108.3	At3g14690	820697	CYP72A15	putative cytochrome P450	O.I.	C.G.	H.G.
12.8	99.3	96.4	At3g26170	822218	CYP71B19	putative cytochrome P450	O.I.	C.G.	H.G.
12.6	99.3	82.4	At1g08550	837377	NPQ1 (NON-PHOTOCHEMICAL QUENCHING 1)	Violaxanthin deepoxidase involved in xanthophyll cycle.Two major consequences of the npq1 mutation are the absence of zeaxanthin formation in strong light and the partial inhibition of the quenching of singlet excited chlorophylls in the photosystem II light-harvesting complex	O.I.	C.G.	H.G.
12.6	99.3	61.6	At1g22570	838863	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;BPOMF	O.I.	C.G.	H.G.
12.4	99.3	22.9	At4g16000	827284	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
12.3	99.3	53.6	At4g30690	829192	translation initiation factor 3 (IF-3) family protein	F:translation initiation factor activity;P:translational initiation;C:cell wall, chloroplast;BOMPF	O.I.	C.G.	H.G.
12.3	99.3	33.0	At4g34138	829561	UGT73B1 (UDP-glucosyl transferase 73B1)	F:quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, abscisic acid glucosyltransferase activity;P:metabolic process;C:endomembrane system;PMBVOF	O.I.	C.G.	H.G.
12.1	99.3	77.7	At1g21130	838709	O-methyltransferase, putative	F:methyltransferase activity, protein dimerization activity, O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
12.1	99.3	58.0	At5g28770	832990	BZO2H3	bZIP protein BZO2H3 mRNA, partial cds	O.I.	C.G.	H.G.
12.0	99.3	17.2	At3g09050	820058	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;MPOBAF	O.I.	C.G.	H.G.
11.9	99.3	7.6	At4g13810	827015	AtRLP47 (Receptor Like Protein 47)	F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAV	O.I.	C.G.	H.G.
11.8	99.3	57.3	At5g22300	832290	NIT4 (NITRILASE 4)	encodes a nitrilase isomer. The purified enzyme shows a strong substrate specificity for beta-cyano-L-alanine, a intermediate product of the cyanide detoxification pathway.	O.I.	C.G.	H.G.
11.8	99.3	38.5	At5g50450	835113	zinc finger (MYND type) family protein	F:binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
11.7	99.3	47.9	At2g36790	818251	UGT73C6 (UDP-glucosyl transferase 73C6)	The At2g36790 gene encodes a UDP-glucose:flavonol-3-O-glycoside-7-O-glucosyltransferase (UGT73C6)attaching a glucosyl residue to the 7-O-position of the flavonols kaempferol, quercetin and their 3-O-glycoside derivatives.	O.I.	C.G.	H.G.
11.7	99.3	12.9	At1g75250	843862	ATRL6 (ARABIDOPSIS RAD-LIKE 6)	F:transcription factor activity;P:regulation of transcription;C:unknown;PMO	O.I.	C.G.	H.G.
11.6	99.3	95.7	At1g05680	837075	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring hexosyl groups, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
11.6	99.3	20.6	At1g66910	843009	protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
11.5	99.3	19.4	At2g04790	815022	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
11.4	99.3	38.4	At5g13730	831218	SIG4 (SIGMA FACTOR 4)	Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.	O.I.	C.G.	H.G.
11.2	99.2	43.8	At3g01920	821220	yrdC family protein	F:unknown;P:biological_process unknown;C:unknown;BOAMFP	O.I.	C.G.	H.G.
11.2	99.2	32.7	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
11.1	99.2	111.1	At4g04330	825753	unknown protein	F:unknown;P:unknown;C:unknown;BPO	O.I.	C.G.	H.G.
10.9	99.2	91.3	At3g03470	821250	CYP89A9	member of CYP89A	O.I.	C.G.	H.G.
10.8	99.2	132.5	At5g16030	831460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBA	O.I.	C.G.	H.G.
10.8	99.2	75.3	At4g12310	826840	CYP706A5	member of CYP706A	O.I.	C.G.	H.G.
10.8	99.2	10.9	At2g32290	817789	BAM6 (BETA-AMYLASE 6)	F:cation binding, beta-amylase activity, catalytic activity;P:cellulose biosynthetic process, carbohydrate metabolic process, polysaccharide catabolic process;C:chloroplast;PBO	O.I.	C.G.	H.G.
10.6	99.2	92.5	At3g10970	820268	haloacid dehalogenase-like hydrolase family protein	F:hydrolase activity, catalytic activity;P:metabolic process;C:chloroplast;BOPAMF	O.I.	C.G.	H.G.
10.5	99.2	186.8	At3g22370	821806	AOX1A (ALTERNATIVE OXIDASE 1A)	Encodes an isoform of alternative oxidase that is expressed in rosettes, flowers, and root. The alternative oxidase of plant mitochondria transfers electrons from the ubiquinone pool to oxygen without energy conservations. It is regulated through transcriptional control and by pyruvate. Plays a role in shoot acclimation to low temperature. Also is capable of ameliorating reactive oxygen species production when the cytochrome pathway is inhibited.	O.I.	C.G.	H.G.
10.5	99.2	93.3	At3g19800	821517	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.5	99.2	41.9	At1g73750	843710	-	F:unknown;P:unknown;C:unknown;PBMO	O.I.	C.G.	H.G.
10.4	99.2	162.8	At4g27800	828893	protein phosphatase 2C PPH1 / PP2C PPH1 (PPH1)	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:nucleolus, nucleus, chloroplast, protein serine/threonine phosphatase complex, cytoplasm;PMOFBVA	O.I.	C.G.	H.G.
10.4	99.2	66.6	At4g03510	825654	RMA1	RMA1 encodes a novel 28 kDa protein with a RING finger motif and a C-terminal membrane-anchoring domain that is involved in the secretory pathway.	O.I.	C.G.	H.G.
10.4	99.2	36.2	At2g01870	814718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;P	O.I.	C.G.	H.G.
10.4	99.2	18.5	At3g26230	822224	CYP71B24	putative cytochrome P450	O.I.	C.G.	H.G.
10.4	99.2	16.9	At3g25740	822165	MAP1B (METHIONINE AMINOPEPTIDASE 1C)	Encodes a plastid localized methionine aminopeptidase. Formerly called MAP1C, now called MAP1B.	O.I.	C.G.	H.G.
10.3	99.2	154.0	At4g23890	828489	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMF	O.I.	C.G.	H.G.
10.3	99.2	101.4	At5g27280	832786	zinc finger (DNL type) family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
10.3	99.2	39.5	At1g66890	843007	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
10.0	99.2	10.7	At1g52550	841686	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POVBM	O.I.	C.G.	H.G.
9.8	99.1	19.9	At3g62950	825470	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;PMBFO	O.I.	C.G.	H.G.
9.6	99.1	51.0	At2g21640	816702	-	Encodes a protein of unknown function that is a marker for oxidative stress response.	O.I.	C.G.	H.G.
9.6	99.1	32.9	At1g69730	843309	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system, integral to membrane;MPOBFVA	O.I.	C.G.	H.G.
9.5	99.1	99.4	At1g63800	842683	UBC5 (ubiquitin-conjugating enzyme 5)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFOPV	O.I.	C.G.	H.G.
9.2	99.1	78.1	At4g00895	827987	ATP synthase delta chain-related	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP synthesis coupled proton transport;C:proton-transporting ATP synthase complex, catalytic core F(1), chloroplast;PFMO	O.I.	C.G.	H.G.
9.1	99.1	47.3	At1g79510	844289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPMO	O.I.	C.G.	H.G.
9.0	99.1	169.5	At4g32340	829368	-	F:unknown;P:unknown;C:unknown;MPBOFVA	O.I.	C.G.	H.G.
9.0	99.1	50.7	At4g12980	826910	auxin-responsive protein, putative	F:unknown;P:multicellular organismal development;C:membrane;PMFOB	O.I.	C.G.	H.G.
9.0	99.1	36.1	At1g22500	838856	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFVB	O.I.	C.G.	H.G.
9.0	99.1	29.6	At3g01660	821098	methyltransferase	F:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOPMAF	O.I.	C.G.	H.G.
8.8	99.0	178.6	At4g13250	826942	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
8.8	99.0	23.2	At2g41120	818711	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
8.7	99.0	28.1	At2g37920	818368	emb1513 (embryo defective 1513)	F:copper ion transmembrane transporter activity;P:embryonic development ending in seed dormancy;C:unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM133786
Assay name	Brueggemann_A-4-Brueg-PpH_SLD
GSE experiment	GSE5731: UV-B Responses in Light Grown Plants: Similarities to Biotic Stress

Microarray experiments to specifically-expressed genes

GSM ID GSM133786 Assay name Brueggemann_A-4-Brueg-PpH_SLD GSE experiment GSE5731: UV-B Responses in Light Grown Plants: Similarities to Biotic Stress

GSM ID GSM133786

Assay name Brueggemann_A-4-Brueg-PpH_SLD

GSE experiment GSE5731: UV-B Responses in Light Grown Plants: Similarities to Biotic Stress