Microarray experiments to specifically-expressed genes

GSM ID GSM133781
Assay name Lindsey_1-6_globular-basal_Rep3_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3410.7100.0635.5At2g26460817187RED family proteinF:molecular_function unknown;P:biological_process unknown;C:nucleus;MFOPVBO.I.C.G.H.G.
2786.9100.0525.8At1g55255--O.I.C.G.H.G.
2654.4100.0578.5At3g07510819939unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
2288.1100.0781.6At1g17770838355SUVH7 (SU(VAR)3-9 HOMOLOG 7)Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.O.I.C.G.H.G.
2274.9100.0564.0At1g77550844091protein binding / tubulin-tyrosine ligaseF:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFBO.I.C.G.H.G.
1935.2100.0408.1At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.O.I.C.G.H.G.
1826.5100.0633.9At3g46860823839serine protease inhibitor, potato inhibitor I-type family proteinPredicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.O.I.C.G.H.G.
1243.1100.0604.7At2g47800819392ATMRP4 (ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 4)Encodes a plasma membrane localized ATPase transporter involved in multidrug transport. The expression of this gene is upregulated by herbicide safeners such as benoxacor, fluxofenim and fenclorim.O.I.C.G.H.G.
1119.0100.0579.1At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
743.3100.0383.7At1g72090843540radical SAM domain-containing protein / TRAM domain-containing proteinF:iron-sulfur cluster binding, catalytic activity;P:metabolic process;C:endoplasmic reticulum, membrane;OBAMPO.I.C.G.H.G.
669.4100.0153.3At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
575.6100.0499.4At1g7775084411130S ribosomal protein S13, chloroplast, putativeF:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAFO.I.C.G.H.G.
551.4100.0281.9At3g11030820274unknown proteinF:unknown;P:unknown;C:unknown;MPOBFVAO.I.C.G.H.G.
550.6100.0251.0At5g10710830936protein bindingF:protein binding;P:chromosome segregation, cell division;C:chromosome, centromeric region, nucleus;PMO.I.C.G.H.G.
526.5100.062.3At5g48350834888nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
430.3100.0188.1At3g06890819874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
403.0100.0379.0At2g01090814638ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMFO.I.C.G.H.G.
382.3100.0504.9At5g02050831729mitochondrial glycoprotein family protein / MAM33 family proteinF:unknown;P:biological_process unknown;C:chloroplast, mitochondrial matrix;PFOMBO.I.C.G.H.G.
377.0100.0160.0At5g38180833798protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
345.1100.064.9At5g36720833637unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
329.4100.0298.7At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
319.6100.0763.2At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
267.6100.0171.2At1g73177843651BNS (BONSAI)The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.O.I.C.G.H.G.
251.6100.0346.8At1g05180839286AXR1 (AUXIN RESISTANT 1)Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.O.I.C.G.H.G.
224.0100.0205.8At2g13540815840ABH1 (ABA HYPERSENSITIVE 1)Encodes a nuclear cap-binding protein that forms a heterodimeric complex with CBP20 and is involved in ABA signaling and flowering. Mutants are early flowering and exhibit hypersensitive response to ABA in germination inhibition.Loss of ABH1 function results in abnormal processing of mRNAs for several important floral regulators (FLC, CO, FLM). Analysis of loss of function mutations suggests a role in pri-miRNA processing and mRNA splicing. Note that two different mutant alleles were given the same name abh1-7 (Kuhn et al 2007; Kim et al 2008). To avoid confusion, abh1-7 described in Kim et al (2008) has been renamed abh1-107 (other names: ensalada-1, ens-1).O.I.C.G.H.G.
202.6100.0164.2At3g09970820158calcineurin-like phosphoesterase family proteinF:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAFO.I.C.G.H.G.
199.8100.0178.6At3g26380822242glycosyl hydrolase family protein 27 / alpha-galactosidase family protein / melibiase family proteinF:alpha-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:N-terminal protein myristoylation, carbohydrate metabolic process, metabolic process, lactose catabolic process;C:cell wall;MBFPOO.I.C.G.H.G.
195.7100.083.6At3g60480825219unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
190.5100.0486.3At3g24510822044-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
177.4100.0423.2At2g25610817101H+-transporting two-sector ATPase, C subunit family proteinF:ATPase activity;P:ATP synthesis coupled proton transport;C:vacuole;MFOPBAO.I.C.G.H.G.
176.1100.0115.8At3g52640824430nicastrin-relatedF:unknown;P:protein processing;C:plasma membrane, vacuole;MOPBO.I.C.G.H.G.
166.2100.0393.1At5g54900835581ATRBP45A (RNA-binding protein 45A)F:RNA binding;P:unknown;C:unknown;MPFOBAO.I.C.G.H.G.
150.299.991.5At2g25720817113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
148.099.9137.5At5g19150832035carbohydrate kinase familyF:unknown;P:biological_process unknown;C:chloroplast;BOMAFPO.I.C.G.H.G.
140.399.9425.2At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
138.399.9169.1At1g33265840221unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;PMBOFO.I.C.G.H.G.
135.399.960.9At5g36950833665DegP10 (DegP protease 10)Encodes a putative DegP protease.O.I.C.G.H.G.
134.199.9907.1At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
126.999.9165.8At1g73990843737SPPAEncodes a putative protease SppA (SppA).O.I.C.G.H.G.
125.399.9822.1At2g46540819266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;PO.I.C.G.H.G.
124.199.990.0At1g32290840121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
116.699.9294.4At1g03140839567splicing factor Prp18 family proteinF:unknown;P:RNA splicing;C:spliceosome;MOFPBO.I.C.G.H.G.
116.199.987.4At3g09650820122HCF152 (HIGH CHLOROPHYLL FLUORESCENCE 152)RNA binding protein involved in the processing of chloroplast psbB-psbT-psbH-petB-petD transcript unit.O.I.C.G.H.G.
101.799.940.0At3g02980821166GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOPFABO.I.C.G.H.G.
101.199.986.5At4g28830829004methyltransferase/ nucleic acid bindingF:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPFO.I.C.G.H.G.
98.699.972.5At5g24970832567ABC1 family proteinF:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;OBPMFAVO.I.C.G.H.G.
98.499.964.9At4g02800828171unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
96.999.9143.4At3g52750824441FTSZ2-2Nuclear gene that encodes a plastidial division protein (FtsZ2-2).O.I.C.G.H.G.
96.599.9572.9At5g05370830419ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;PO.I.C.G.H.G.
96.399.9603.6At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
87.499.9183.8At1g16000838170unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
85.499.9195.1At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
84.499.950.6At1g61920842487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
84.199.9102.9At2g19620816481Ndr family proteinF:molecular_function unknown;P:cell differentiation;C:cellular_component unknown;MBPOO.I.C.G.H.G.
82.999.964.5At1g600808423033' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MAOFPBO.I.C.G.H.G.
82.299.955.6At2g04740815017ankyrin repeat family proteinF:protein binding;P:unknown;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
72.599.971.6At5g48340834887unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.C.G.H.G.
66.799.881.6At2g38620818444CDKB1Encodes a member of a plant specific family of cyclin dependent kinases.O.I.C.G.H.G.
64.999.850.1At2g43040818906NPG1 (no pollen germination 1)encodes a calmodulin-binding protein that is expressed specifically in pollen and is required for pollen development.O.I.C.G.H.G.
64.499.8237.2At5g48870834945SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.O.I.C.G.H.G.
63.799.8185.6At2g43640818966signal recognition particle 14 kDa family protein / SRP14 family proteinF:7S RNA binding, protein binding, endoplasmic reticulum signal peptide binding, RNA binding;P:negative regulation of translational elongation, protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFPOO.I.C.G.H.G.
62.899.8234.6At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
62.499.8142.5At4g39300830086unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
61.399.8225.0At5g27670832829HTA7 (HISTONE H2A 7)Encodes HTA7, a histone H2A protein.O.I.C.G.H.G.
60.599.853.4At5g62410836362SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)SMC2-1 (SMC2)O.I.C.G.H.G.
58.999.8347.3At1g61570842453TIM13 (TRANSLOCASE OF THE INNER MITOCHONDRIAL MEMBRANE 13)Encodes a putative small zinc finger-like protein (TIM13); nucleus-encoded gene whose product is found in the mitochondrial inner membrane space.O.I.C.G.H.G.
55.899.864.8At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
55.899.850.6At4g274908288583' exoribonuclease family domain 1-containing proteinF:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;BOMAFPO.I.C.G.H.G.
53.299.834.6At3g24090821995glutamine-fructose-6-phosphate transaminase (isomerizing)/ sugar binding / transaminaseF:sugar binding, transaminase activity, glutamine-fructose-6-phosphate transaminase (isomerizing) activity;P:carbohydrate biosynthetic process, carbohydrate metabolic process, metabolic process;C:cytoplasm;OBMAFPVO.I.C.G.H.G.
50.999.860.0At3g04810819641ATNEK2 (NIMA-RELATED KINASE 2)Encodes AtNek2, a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes.O.I.C.G.H.G.
50.699.888.0At2g45590819167protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
48.899.862.8At3g54850824650PUB14Encodes a protein with ubiquitin ligase activity.O.I.C.G.H.G.
47.799.851.6At1g06520837163GPAT1 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 1)Encodes a membrane associated mitochondrial localized protein with glycerol-3-phosphate acyltransferase activity.Expressed in flower buds and siliques. Homozygous mutant plants are male sterile and have abnormal glycerolipid levels.O.I.C.G.H.G.
46.099.8156.1At4g32870829423unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
43.199.8532.9At2g2521081705960S ribosomal protein L39 (RPL39A)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
43.199.8101.7At5g12190831092RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFOPBO.I.C.G.H.G.
41.999.8262.3At4g09030826482AGP10 (ARABINOGALACTAN PROTEIN 10)Encodes arabinogalactan protein (AGP10).O.I.C.G.H.G.
40.799.8882.8At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
40.599.8181.1At5g54580835546RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.C.G.H.G.
39.599.816.5At1g53930841831ubiquitin family proteinF:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
38.999.8279.5At3g07680819959emp24/gp25L/p24 family proteinF:protein transmembrane transporter activity;P:intracellular protein transport, transport;C:endomembrane system, integral to membrane, membrane;MFPOO.I.C.G.H.G.
38.399.820.8At1g423653767242transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.599.7305.1At5g55290835622ATP synthase subunit H family proteinF:hydrogen ion transmembrane transporter activity;P:ATP hydrolysis coupled proton transport;C:vacuole;MPOFO.I.C.G.H.G.
36.199.7525.7At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
36.099.7361.1At3g03920821062Gar1 RNA-binding region family proteinF:RNA binding, rRNA binding;P:rRNA processing;C:chloroplast thylakoid membrane, nucleolus;MPBOFVAO.I.C.G.H.G.
35.599.721.1At4g05350825883zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
35.499.7494.4At5g5842083595540S ribosomal protein S4 (RPS4D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;MOAFPO.I.C.G.H.G.
35.299.7473.9At2g28790817428osmotin-like protein, putativeF:molecular_function unknown;P:response to other organism;C:plant-type cell wall;PFMBOO.I.C.G.H.G.
35.199.713.5At5g46360834679KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.O.I.C.G.H.G.
34.699.715.0At1g43920840991transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
34.599.7179.0At2g46390819247unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
34.099.7931.5At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.
31.199.7264.2At2g20490816569NOP10F:RNA binding;P:polar nucleus fusion;C:nucleolus, Cajal body;MFOPO.I.C.G.H.G.
29.999.7448.4At1g51650841590ATP synthase epsilon chain, mitochondrialF:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP biosynthetic process, ATP synthesis coupled proton transport;C:mitochondrion;MPOFO.I.C.G.H.G.
29.399.7764.7At5g5671083577260S ribosomal protein L31 (RPL31C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic ribosome, cytosolic large ribosomal subunit, ribosome, cell wall;MOPAFBO.I.C.G.H.G.
29.399.714.5At1g49810841404ATNHD2member of Na+/H+ antiporter-Putative familyO.I.C.G.H.G.
27.399.756.2At2g06090815164self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.399.738.8At2g41820818781leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVAO.I.C.G.H.G.
26.899.775.4At1g11240837665unknown proteinF:unknown;P:unknown;C:cellular_component unknown;MOFPBVO.I.C.G.H.G.
26.599.714.3At5g28800832996unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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