Microarray experiments to specifically-expressed genes

GSM ID GSM133780
Assay name Lindsey_1-3_globular-apical_Rep3_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1249.9100.0102.3At3g29570822617unknown proteinF:unknown;P:unknown;C:unknown;MOFPBVO.I.C.G.H.G.
1126.3100.0350.7At5g06190830506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
931.1100.0236.6At3g02490820563pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
813.3100.01022.8At2g28020817346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
672.1100.040.8At3g12440820423extensin family proteinF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;PMOBFVO.I.C.G.H.G.
610.2100.0403.6At3g06310819805NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPOO.I.C.G.H.G.
574.4100.0242.1At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
467.7100.052.9At5g51380835212F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFBO.I.C.G.H.G.
463.3100.0918.9At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
406.1100.0161.1At4g16240827318unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVAO.I.C.G.H.G.
361.7100.0329.2At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
290.9100.0140.7At2g41460818744ARPapurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.O.I.C.G.H.G.
233.2100.0890.7At5g05370830419ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;PO.I.C.G.H.G.
198.4100.0105.2At1g07380837250ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:plasma membrane;BMFOPO.I.C.G.H.G.
184.9100.099.9At1g711808434586-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
175.4100.045.1At5g07660830659structural maintenance of chromosomes (SMC) family proteinF:protein binding, two-component sensor activity, ATP binding;P:signal transduction, chromosome segregation, chromosome organization;C:chromosome, nucleus, membrane;MOBFPAVO.I.C.G.H.G.
173.2100.049.7At5g24330832503ATXR6Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.O.I.C.G.H.G.
166.1100.0122.3At5g63000836420unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
146.399.916.5At1g80580844397ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
139.599.984.6At1g28540839754unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
139.099.9349.1At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
138.299.9155.0At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
131.099.942.0At5g25500832625unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
129.699.930.9At5g48350834888nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:unknown;PMFBOO.I.C.G.H.G.
128.799.9113.4At2g38620818444CDKB1Encodes a member of a plant specific family of cyclin dependent kinases.O.I.C.G.H.G.
115.399.945.1At3g53450824513unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:cellular_component unknown;BOPFMAO.I.C.G.H.G.
114.099.9112.0At3g26640822276LWD2 (LIGHT-REGULATED WD 2)F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
112.899.943.7At3g27330822354zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVO.I.C.G.H.G.
110.399.977.2At5g13610831205unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FBPOMO.I.C.G.H.G.
99.799.921.1At2g35733818144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
96.799.9148.6At1g1525083809260S ribosomal protein L37 (RPL37A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
96.399.933.8At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.O.I.C.G.H.G.
94.899.992.6At3g53380824506lectin protein kinase family proteinF:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
86.199.945.5At1g69440843276AGO7 (ARGONAUTE7)Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.O.I.C.G.H.G.
85.799.9294.4At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
85.299.988.5At3g18520821382HDA15Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.O.I.C.G.H.G.
81.899.949.9At3g58540825023unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
81.699.925.1At5g18540831972unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAO.I.C.G.H.G.
78.299.9405.6At5g03345831867-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
78.199.964.5At5g01780831672oxidoreductaseF:oxidoreductase activity;P:unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
77.199.976.2At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
76.899.944.0At3g45590823701ATSEN1 (SPLICING ENDONUCLEASE 1)Encodes a catalytic subunit of tRNA splicing endonuclease.O.I.C.G.H.G.
75.099.9125.4At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.O.I.C.G.H.G.
73.799.982.9At3g18030821327ATHAL3Aflavin mononucleotide flavoprotein involved in salt and osmotic tolerance HAL3A encodes for phosphopantothenoylcysteine decarboxylase being involved in Coenzyme A biosynthesis. HAL3A is predominant over another gene with the presumably same function (HAL3B).O.I.C.G.H.G.
69.899.932.5At4g36580829810AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVO.I.C.G.H.G.
68.099.98.0At5g09700830829-pseudogene of glycosyl hydrolase family 3 proteinO.I.C.G.H.G.
66.699.8240.9At1g74260843766PUR4 (purine biosynthesis 4)Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.O.I.C.G.H.G.
61.799.811.5At2g27610817307pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAO.I.C.G.H.G.
61.499.8650.8At5g5842083595540S ribosomal protein S4 (RPS4D)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;MOAFPO.I.C.G.H.G.
58.699.8670.1At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
58.499.845.7At5g08565830757positive transcription elongation factor/ zinc ion bindingF:positive transcription elongation factor activity, zinc ion binding;P:positive regulation of transcription;C:nucleus;MFOPO.I.C.G.H.G.
56.799.863.2At3g15720820815glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAVO.I.C.G.H.G.
55.799.812.1At3g11640820336unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
55.599.8133.5At5g09830830843BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
55.199.891.4At3g63250825500HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.O.I.C.G.H.G.
54.399.896.0At1g57540842129unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.099.8114.8At5g65880836717unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
52.699.8121.8At5g42220834227ubiquitin family proteinF:unknown;P:protein modification process;C:unknown;MOPFBVAO.I.C.G.H.G.
51.399.824.9At1g64260842731zinc finger protein-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
50.699.8180.6At2g18390816354TTN5 (TITAN 5)Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.O.I.C.G.H.G.
50.499.839.3At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
49.999.8310.6At3g62400825413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
49.499.8160.3At2g47640819377small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.C.G.H.G.
49.399.8408.7At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
48.499.8658.7At4g3198582932960S ribosomal protein L39 (RPL39C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAFOPO.I.C.G.H.G.
47.799.862.0At4g10620826654-F:unknown;P:biological_process unknown;C:chloroplast;BMFOPAO.I.C.G.H.G.
45.499.836.7At4g22770828376DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBFMOVO.I.C.G.H.G.
44.299.8723.4At1g76200843953unknown proteinF:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;FPOO.I.C.G.H.G.
44.199.8487.9At2g46540819266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;PO.I.C.G.H.G.
43.899.827.5At5g59340836053WOX2 (WUSCHEL RELATED HOMEOBOX 2)Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain.O.I.C.G.H.G.
43.799.889.8At3g57880824957C2 domain-containing proteinF:molecular_function unknown;P:tryptophan biosynthetic process;C:endoplasmic reticulum, cell wall;MPOFO.I.C.G.H.G.
43.399.8259.4At5g20180832141ribosomal protein L36 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFMO.I.C.G.H.G.
42.799.8848.5At2g4020581861260S ribosomal protein L41 (RPL41C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFOO.I.C.G.H.G.
41.899.829.3At4g01510826763ARV2F:molecular_function unknown;P:sterol metabolic process, sphingolipid metabolic process;C:endoplasmic reticulum, membrane;MFOPO.I.C.G.H.G.
41.699.8111.2At3g01130821228unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
40.799.8104.9At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
39.899.8306.1At5g08040830698TOM5 (MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM5 HOMOLOG)F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;PO.I.C.G.H.G.
39.899.8124.1At1g53520841787chalcone-flavanone isomerase-relatedF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBFO.I.C.G.H.G.
37.999.81355.6At4g3386582952940S ribosomal protein S29 (RPS29C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.C.G.H.G.
37.999.852.3At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).O.I.C.G.H.G.
36.599.7155.4At1g02160839554-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO.I.C.G.H.G.
34.099.754.0At4g02010827234protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
33.799.773.3At3g24315822020AtSec20F:molecular_function unknown;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
32.999.7817.7At5g0385083169240S ribosomal protein S28 (RPS28B)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, ribosome, cell wall, plasma membrane;MOAPFO.I.C.G.H.G.
32.499.7532.1At5g59870836109HTA6Encodes HTA6, a histone H2A protein.O.I.C.G.H.G.
32.399.738.2At5g47630834813mtACP3 (mitochondrial acyl carrier protein 3)Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.O.I.C.G.H.G.
32.199.751.9At2g33860817956ETT (ETTIN)ettin (ett) mutations have pleiotropic effects on Arabidopsis flower development, causing increases in perianth organ number, decreases in stamen number and anther formation, and apical-basal patterning defects in the gynoecium. The ETTIN gene encodes a protein with homology to DNA binding proteins which bind to auxin response elements. ETT transcript is expressed throughout stage 1 floral meristems and subsequently resolves to a complex pattern within petal, stamen and carpel primordia. ETT probably functions to impart regional identity in floral meristems that affects perianth organ number spacing, stamen formation, and regional differentiation in stamens and the gynoecium. During stage 5, ETT expression appears in a ring at the top of the floral meristem before morphological appearance of the gynoecium, consistent with the proposal that ETT is involved in prepatterning apical and basal boundaries in the gynoecium primordium. It is a target of the ta-siRNA tasiR-ARF.O.I.C.G.H.G.
31.999.763.6At1g05210839261-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
31.499.7591.4At3g10860820256ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;PO.I.C.G.H.G.
31.499.738.6At2g07170815286bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMAO.I.C.G.H.G.
31.399.726.7At1g24290839045AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;BOMFAPVO.I.C.G.H.G.
31.299.7147.4At2g38810818463HTA8 (HISTONE H2A 8)Encodes HTA8, a histone H2A protein.O.I.C.G.H.G.
31.199.727.0At3g47850823941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOFBO.I.C.G.H.G.
31.199.722.4At2g43200818921dehydration-responsive family proteinF:unknown;P:unknown;C:unknown;PBOAMFO.I.C.G.H.G.
30.999.7435.8At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
29.899.731.2At3g16010820846pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.C.G.H.G.
29.799.767.4At3g13845820597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
29.299.738.7At5g38070833787zinc finger (C3HC4-type RING finger) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVO.I.C.G.H.G.
28.499.737.3At5g04790830358unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
27.599.7837.2At4g3920083007540S ribosomal protein S25 (RPS25E)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome;MFPOAO.I.C.G.H.G.



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