CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133779

Assay name Lindsey_1-5_globular-basal_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2619.9 100.0 149.9 At5g17430 831609 BBM (BABY BOOM) Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. O.I. C.G. H.G.
836.3 100.0 209.9 At3g17700 821037 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1) cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. O.I. C.G. H.G.
448.9 100.0 155.6 At5g05480 830431 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPABO O.I. C.G. H.G.
421.1 100.0 242.9 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
414.5 100.0 41.7 At5g37140 833686 tRNA-splicing endonuclease positive effector-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV O.I. C.G. H.G.
375.5 100.0 827.3 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. O.I. C.G. H.G.
333.7 100.0 105.7 At5g11020 830969 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA O.I. C.G. H.G.
328.3 100.0 154.0 At3g02000 820200 ROXY1 Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN). O.I. C.G. H.G.
299.7 100.0 156.3 At1g80210 844361 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPOB O.I. C.G. H.G.
299.0 100.0 130.4 At5g58980 836015 ceramidase family protein F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP O.I. C.G. H.G.
298.8 100.0 291.1 At2g23150 816847 NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3) Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination. O.I. C.G. H.G.
262.1 100.0 57.7 At1g67180 843038 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein F:protein binding, zinc ion binding;P:unknown;C:intracellular;MOFPV O.I. C.G. H.G.
250.9 100.0 46.9 At2g20480 816568 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
238.8 100.0 51.9 At1g52530 841684 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
232.5 100.0 62.8 At3g27330 822354 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. C.G. H.G.
224.1 100.0 119.6 At4g00320 827939 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:membrane;P O.I. C.G. H.G.
219.0 100.0 229.1 At1g53290 841763 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB O.I. C.G. H.G.
211.3 100.0 59.6 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
200.3 100.0 82.1 At5g60870 836208 regulator of chromosome condensation (RCC1) family protein F:Ran GTPase binding;P:biological_process unknown;C:mitochondrion;MOBPFAV O.I. C.G. H.G.
198.3 100.0 623.2 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
192.1 100.0 144.8 At5g06190 830506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
175.2 100.0 166.3 At5g08535 830753 D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFO O.I. C.G. H.G.
175.0 100.0 971.5 At2g46540 819266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P O.I. C.G. H.G.
174.5 100.0 244.8 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
171.3 100.0 21.4 At5g15340 831386 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POMF O.I. C.G. H.G.
140.9 99.9 68.2 At2g13840 815867 PHP domain-containing protein F:DNA binding, DNA-directed DNA polymerase activity, catalytic activity;P:DNA replication;C:cellular_component unknown;BOAPF O.I. C.G. H.G.
139.5 99.9 79.1 At3g46920 823845 protein kinase family protein F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA O.I. C.G. H.G.
133.8 99.9 48.9 At3g47460 823900 ATSMC2 member of SMC subfamily O.I. C.G. H.G.
132.4 99.9 176.6 At5g01015 831731 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
125.7 99.9 216.9 At4g25830 828688 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
123.7 99.9 285.9 At1g02160 839554 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM O.I. C.G. H.G.
123.4 99.9 647.0 At5g13000 831140 ATGSL12 (glucan synthase-like 12) encodes a gene similar to callose synthase O.I. C.G. H.G.
119.8 99.9 35.6 At2g37880 818364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
116.9 99.9 177.9 At1g08700 837391 presenilin family protein Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. O.I. C.G. H.G.
115.6 99.9 206.8 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
114.2 99.9 837.1 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
110.1 99.9 129.5 At2g20585 816581 NFD6 (NUCLEAR FUSION DEFECTIVE 6) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
108.9 99.9 25.0 At3g61090 825281 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
104.1 99.9 302.1 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
102.2 99.9 175.0 At3g21090 821661 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
101.9 99.9 297.9 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. O.I. C.G. H.G.
97.6 99.9 85.7 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
92.8 99.9 86.0 At1g21090 838705 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:anchored to membrane;PMFOB O.I. C.G. H.G.
92.0 99.9 164.1 At5g61220 836243 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
91.2 99.9 211.6 At3g62790 825454 NADH-ubiquinone oxidoreductase-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOM O.I. C.G. H.G.
90.4 99.9 108.4 At2g27130 817255 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P O.I. C.G. H.G.
89.4 99.9 95.4 At1g10230 837562 ASK18 (ARABIDOPSIS SKP1-LIKE 18) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFV O.I. C.G. H.G.
89.2 99.9 79.2 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
87.3 99.9 92.8 At5g40490 834047 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
85.9 99.9 76.5 At2g41460 818744 ARP apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. O.I. C.G. H.G.
85.1 99.9 42.2 At2g30560 817605 glycine-rich protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
84.8 99.9 6.8 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
81.4 99.9 147.4 At3g06310 819805 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO O.I. C.G. H.G.
78.0 99.9 33.3 At5g24330 832503 ATXR6 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. O.I. C.G. H.G.
77.4 99.9 122.4 At1g11280 837670 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA O.I. C.G. H.G.
77.2 99.9 191.7 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
75.8 99.9 156.0 At1g74790 843818 catalytic F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF O.I. C.G. H.G.
75.5 99.9 25.4 At1g48870 841309 WD-40 repeat family protein F:protein phosphatase type 2A regulator activity, signal transducer activity;P:signal transduction;C:protein phosphatase type 2A complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
75.1 99.9 303.6 At4g30760 829199 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
74.8 99.9 60.6 At1g74240 843764 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
74.8 99.9 19.5 At1g60400 842335 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
73.6 99.9 88.6 At1g34640 840368 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
73.4 99.9 40.7 At4g35620 829714 CYCB2 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB O.I. C.G. H.G.
73.0 99.9 126.8 At3g46860 823839 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
72.7 99.9 336.1 At5g20180 832141 ribosomal protein L36 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFM O.I. C.G. H.G.
72.7 99.9 42.1 At1g10240 837563 FRS11 (FAR1-related sequence 11) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFOM O.I. C.G. H.G.
70.0 99.9 34.3 At1g04150 839249 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
69.8 99.9 256.1 At4g13780 827012 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV O.I. C.G. H.G.
68.2 99.9 108.9 At1g04645 839459 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
66.1 99.8 28.9 At3g23330 821914 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
60.5 99.8 279.1 At2g03870 814913 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP O.I. C.G. H.G.
60.3 99.8 55.3 At2g01630 814692 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
60.1 99.8 43.0 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
59.9 99.8 36.6 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.4 99.8 474.2 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
58.9 99.8 71.5 At1g63440 842650 HMA5 (HEAVY METAL ATPASE 5) The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed. O.I. C.G. H.G.
58.0 99.8 214.5 At5g54220 835510 - Encodes a defensin-like (DEFL) family protein. O.I. C.G. H.G.
57.7 99.8 23.1 At5g47440 834792 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF O.I. C.G. H.G.
55.8 99.8 207.0 At1g27435 839634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
55.8 99.8 22.5 At4g37170 829871 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
55.7 99.8 44.1 At5g19380 832058 unknown protein F:unknown;P:unknown;C:chloroplast;OPBMA O.I. C.G. H.G.
54.2 99.8 164.2 At4g34555 829607 40S ribosomal protein S25, putative F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOA O.I. C.G. H.G.
53.8 99.8 51.4 At2g26760 817217 CYCB1 F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV O.I. C.G. H.G.
53.7 99.8 200.8 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
53.4 99.8 426.2 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
53.1 99.8 55.2 At1g23890 839000 NHL repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAP O.I. C.G. H.G.
52.7 99.8 197.1 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
51.0 99.8 188.5 At2g38810 818463 HTA8 (HISTONE H2A 8) Encodes HTA8, a histone H2A protein. O.I. C.G. H.G.
49.8 99.8 40.8 At3g57180 824885 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
49.7 99.8 211.6 At2g38900 818474 serine protease inhibitor, potato inhibitor I-type family protein Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860. O.I. C.G. H.G.
49.5 99.8 72.2 At1g12400 837795 DNA binding F:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPO O.I. C.G. H.G.
49.0 99.8 197.9 At3g06320 819806 ribosomal protein L33 family protein F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF O.I. C.G. H.G.
48.5 99.8 54.7 At1g19270 838510 DA1 (DA 1) F:ubiquitin binding;P:seed morphogenesis, ovule morphogenesis, negative regulation of organ growth;C:unknown;MOPFB O.I. C.G. H.G.
47.9 99.8 157.9 At2g47640 819377 small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA O.I. C.G. H.G.
47.8 99.8 15.4 At3g44240 823549 CCR4-NOT transcription complex protein, putative F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF O.I. C.G. H.G.
47.4 99.8 128.8 At1g21570 838758 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
47.4 99.8 61.8 At4g10620 826654 - F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA O.I. C.G. H.G.
46.6 99.8 10.7 At5g28920 833015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
46.5 99.8 34.8 At4g14330 827075 phragmoplast-associated kinesin-related protein 2 (PAKRP2) F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:phragmoplast;MOFPBAV O.I. C.G. H.G.
46.1 99.8 22.7 At5g55320 835625 membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related F:acyltransferase activity;P:unknown;C:unknown;BPOF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2619.9	100.0	149.9	At5g17430	831609	BBM (BABY BOOM)	Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.	O.I.	C.G.	H.G.
836.3	100.0	209.9	At3g17700	821037	CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1)	cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.	O.I.	C.G.	H.G.
448.9	100.0	155.6	At5g05480	830431	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPABO	O.I.	C.G.	H.G.
421.1	100.0	242.9	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
414.5	100.0	41.7	At5g37140	833686	tRNA-splicing endonuclease positive effector-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV	O.I.	C.G.	H.G.
375.5	100.0	827.3	At4g28190	828934	ULT1 (ULTRAPETALA1)	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.	O.I.	C.G.	H.G.
333.7	100.0	105.7	At5g11020	830969	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
328.3	100.0	154.0	At3g02000	820200	ROXY1	Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).	O.I.	C.G.	H.G.
299.7	100.0	156.3	At1g80210	844361	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MFPOB	O.I.	C.G.	H.G.
299.0	100.0	130.4	At5g58980	836015	ceramidase family protein	F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP	O.I.	C.G.	H.G.
298.8	100.0	291.1	At2g23150	816847	NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3)	Encodes a member of the Nramp2 metal transporter family; like its homolog Atnramp4, localized in vacuolar membrane. Seedlings of double mutant, atnramp3-1 atnramp4-1, were arrested at early germination.	O.I.	C.G.	H.G.
262.1	100.0	57.7	At1g67180	843038	zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein	F:protein binding, zinc ion binding;P:unknown;C:intracellular;MOFPV	O.I.	C.G.	H.G.
250.9	100.0	46.9	At2g20480	816568	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
238.8	100.0	51.9	At1g52530	841684	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
232.5	100.0	62.8	At3g27330	822354	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
224.1	100.0	119.6	At4g00320	827939	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;P	O.I.	C.G.	H.G.
219.0	100.0	229.1	At1g53290	841763	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB	O.I.	C.G.	H.G.
211.3	100.0	59.6	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
200.3	100.0	82.1	At5g60870	836208	regulator of chromosome condensation (RCC1) family protein	F:Ran GTPase binding;P:biological_process unknown;C:mitochondrion;MOBPFAV	O.I.	C.G.	H.G.
198.3	100.0	623.2	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
192.1	100.0	144.8	At5g06190	830506	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
175.2	100.0	166.3	At5g08535	830753	D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFO	O.I.	C.G.	H.G.
175.0	100.0	971.5	At2g46540	819266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
174.5	100.0	244.8	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
171.3	100.0	21.4	At5g15340	831386	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POMF	O.I.	C.G.	H.G.
140.9	99.9	68.2	At2g13840	815867	PHP domain-containing protein	F:DNA binding, DNA-directed DNA polymerase activity, catalytic activity;P:DNA replication;C:cellular_component unknown;BOAPF	O.I.	C.G.	H.G.
139.5	99.9	79.1	At3g46920	823845	protein kinase family protein	F:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVA	O.I.	C.G.	H.G.
133.8	99.9	48.9	At3g47460	823900	ATSMC2	member of SMC subfamily	O.I.	C.G.	H.G.
132.4	99.9	176.6	At5g01015	831731	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
125.7	99.9	216.9	At4g25830	828688	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
123.7	99.9	285.9	At1g02160	839554	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM	O.I.	C.G.	H.G.
123.4	99.9	647.0	At5g13000	831140	ATGSL12 (glucan synthase-like 12)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
119.8	99.9	35.6	At2g37880	818364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
116.9	99.9	177.9	At1g08700	837391	presenilin family protein	Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.	O.I.	C.G.	H.G.
115.6	99.9	206.8	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
114.2	99.9	837.1	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
110.1	99.9	129.5	At2g20585	816581	NFD6 (NUCLEAR FUSION DEFECTIVE 6)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
108.9	99.9	25.0	At3g61090	825281	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
104.1	99.9	302.1	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
102.2	99.9	175.0	At3g21090	821661	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
101.9	99.9	297.9	At1g74260	843766	PUR4 (purine biosynthesis 4)	Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.	O.I.	C.G.	H.G.
97.6	99.9	85.7	At5g08460	830745	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
92.8	99.9	86.0	At1g21090	838705	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:anchored to membrane;PMFOB	O.I.	C.G.	H.G.
92.0	99.9	164.1	At5g61220	836243	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
91.2	99.9	211.6	At3g62790	825454	NADH-ubiquinone oxidoreductase-related	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOM	O.I.	C.G.	H.G.
90.4	99.9	108.4	At2g27130	817255	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:anchored to plasma membrane, anchored to membrane;P	O.I.	C.G.	H.G.
89.4	99.9	95.4	At1g10230	837562	ASK18 (ARABIDOPSIS SKP1-LIKE 18)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:unknown;MPOFV	O.I.	C.G.	H.G.
89.2	99.9	79.2	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
87.3	99.9	92.8	At5g40490	834047	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
85.9	99.9	76.5	At2g41460	818744	ARP	apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	O.I.	C.G.	H.G.
85.1	99.9	42.2	At2g30560	817605	glycine-rich protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
84.8	99.9	6.8	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
81.4	99.9	147.4	At3g06310	819805	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
78.0	99.9	33.3	At5g24330	832503	ATXR6	Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.	O.I.	C.G.	H.G.
77.4	99.9	122.4	At1g11280	837670	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
77.2	99.9	191.7	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
75.8	99.9	156.0	At1g74790	843818	catalytic	F:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAF	O.I.	C.G.	H.G.
75.5	99.9	25.4	At1g48870	841309	WD-40 repeat family protein	F:protein phosphatase type 2A regulator activity, signal transducer activity;P:signal transduction;C:protein phosphatase type 2A complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
75.1	99.9	303.6	At4g30760	829199	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
74.8	99.9	60.6	At1g74240	843764	mitochondrial substrate carrier family protein	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
74.8	99.9	19.5	At1g60400	842335	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
73.6	99.9	88.6	At1g34640	840368	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
73.4	99.9	40.7	At4g35620	829714	CYCB2	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVB	O.I.	C.G.	H.G.
73.0	99.9	126.8	At3g46860	823839	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
72.7	99.9	336.1	At5g20180	832141	ribosomal protein L36 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFM	O.I.	C.G.	H.G.
72.7	99.9	42.1	At1g10240	837563	FRS11 (FAR1-related sequence 11)	F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
70.0	99.9	34.3	At1g04150	839249	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
69.8	99.9	256.1	At4g13780	827012	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV	O.I.	C.G.	H.G.
68.2	99.9	108.9	At1g04645	839459	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
66.1	99.8	28.9	At3g23330	821914	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
60.5	99.8	279.1	At2g03870	814913	small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative	F:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOP	O.I.	C.G.	H.G.
60.3	99.8	55.3	At2g01630	814692	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
60.1	99.8	43.0	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
59.9	99.8	36.6	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.4	99.8	474.2	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
58.9	99.8	71.5	At1g63440	842650	HMA5 (HEAVY METAL ATPASE 5)	The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.	O.I.	C.G.	H.G.
58.0	99.8	214.5	At5g54220	835510	-	Encodes a defensin-like (DEFL) family protein.	O.I.	C.G.	H.G.
57.7	99.8	23.1	At5g47440	834792	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
55.8	99.8	207.0	At1g27435	839634	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
55.8	99.8	22.5	At4g37170	829871	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
55.7	99.8	44.1	At5g19380	832058	unknown protein	F:unknown;P:unknown;C:chloroplast;OPBMA	O.I.	C.G.	H.G.
54.2	99.8	164.2	At4g34555	829607	40S ribosomal protein S25, putative	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOA	O.I.	C.G.	H.G.
53.8	99.8	51.4	At2g26760	817217	CYCB1	F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFV	O.I.	C.G.	H.G.
53.7	99.8	200.8	At2g34700	818035	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
53.4	99.8	426.2	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
53.1	99.8	55.2	At1g23890	839000	NHL repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BOMAP	O.I.	C.G.	H.G.
52.7	99.8	197.1	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
51.0	99.8	188.5	At2g38810	818463	HTA8 (HISTONE H2A 8)	Encodes HTA8, a histone H2A protein.	O.I.	C.G.	H.G.
49.8	99.8	40.8	At3g57180	824885	GTP binding	F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
49.7	99.8	211.6	At2g38900	818474	serine protease inhibitor, potato inhibitor I-type family protein	Predicted to encode a PR (pathogenesis-related) peptide that belongs to the PR-6 proteinase inhibitor family. Six putative PR-6-type protein encoding genes are found in Arabidopsis: At2g38900, At2g38870, At5g43570, At5g43580, At3g50020 and At3g46860.	O.I.	C.G.	H.G.
49.5	99.8	72.2	At1g12400	837795	DNA binding	F:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPO	O.I.	C.G.	H.G.
49.0	99.8	197.9	At3g06320	819806	ribosomal protein L33 family protein	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMF	O.I.	C.G.	H.G.
48.5	99.8	54.7	At1g19270	838510	DA1 (DA 1)	F:ubiquitin binding;P:seed morphogenesis, ovule morphogenesis, negative regulation of organ growth;C:unknown;MOPFB	O.I.	C.G.	H.G.
47.9	99.8	157.9	At2g47640	819377	small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative	F:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPA	O.I.	C.G.	H.G.
47.8	99.8	15.4	At3g44240	823549	CCR4-NOT transcription complex protein, putative	F:ribonuclease activity, nucleic acid binding;P:RNA modification;C:nucleus;MPOF	O.I.	C.G.	H.G.
47.4	99.8	128.8	At1g21570	838758	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
47.4	99.8	61.8	At4g10620	826654	-	F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA	O.I.	C.G.	H.G.
46.6	99.8	10.7	At5g28920	833015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
46.5	99.8	34.8	At4g14330	827075	phragmoplast-associated kinesin-related protein 2 (PAKRP2)	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:phragmoplast;MOFPBAV	O.I.	C.G.	H.G.
46.1	99.8	22.7	At5g55320	835625	membrane bound O-acyl transferase (MBOAT) family protein / wax synthase-related	F:acyltransferase activity;P:unknown;C:unknown;BPOF	O.I.	C.G.	H.G.

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GSM ID	GSM133779
Assay name	Lindsey_1-5_globular-basal_Rep2_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133779 Assay name Lindsey_1-5_globular-basal_Rep2_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133779

Assay name Lindsey_1-5_globular-basal_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues