CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133778

Assay name Lindsey_1-2_globular-apical_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1438.8 100.0 232.7 At4g11640 826769 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases. O.I. C.G. H.G.
1316.5 100.0 219.8 At1g34150 840314 tRNA pseudouridine synthase family protein F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP O.I. C.G. H.G.
852.1 100.0 164.7 At2g07777 2745461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
300.1 100.0 54.6 At4g01930 828198 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
293.1 100.0 145.5 At3g02000 820200 ROXY1 Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN). O.I. C.G. H.G.
289.6 100.0 214.9 At3g24315 822020 AtSec20 F:molecular_function unknown;P:unknown;C:unknown;MFPO O.I. C.G. H.G.
275.3 100.0 167.1 At4g18400 827570 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF O.I. C.G. H.G.
264.5 100.0 85.8 At1g08390 837359 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MP O.I. C.G. H.G.
242.1 100.0 291.1 At1g21570 838758 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
228.9 100.0 62.0 At1g04150 839249 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
222.2 100.0 1094.6 At2g46540 819266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P O.I. C.G. H.G.
221.0 100.0 37.7 At4g29540 829075 bacterial transferase hexapeptide repeat-containing protein F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity;P:lipid biosynthetic process;C:unknown;BOAPFMV O.I. C.G. H.G.
216.5 100.0 153.7 At5g06190 830506 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
202.1 100.0 61.9 At4g28330 828948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
197.1 100.0 621.4 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
195.3 100.0 39.8 At4g02670 828206 AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12) F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF O.I. C.G. H.G.
189.4 100.0 231.2 At5g42220 834227 ubiquitin family protein F:unknown;P:protein modification process;C:unknown;MOPFBVA O.I. C.G. H.G.
182.8 100.0 45.6 At1g65080 842816 OXA1 family protein F:binding;P:protein insertion into membrane;C:membrane;BMFOP O.I. C.G. H.G.
172.9 100.0 106.2 At1g32290 840121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
153.1 99.9 107.2 At3g57320 824899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
152.9 99.9 543.5 At3g62400 825413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
147.1 99.9 64.1 At5g06590 830547 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
143.9 99.9 46.8 At5g46640 834707 DNA-binding family protein F:DNA binding;P:unknown;C:unknown;PBMOF O.I. C.G. H.G.
137.7 99.9 138.9 At1g30040 839883 ATGA2OX2 (GIBBERELLIN 2-OXIDASE) Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
136.3 99.9 96.3 At2g41460 818744 ARP apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair. O.I. C.G. H.G.
128.6 99.9 21.6 At2g44590 819067 ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D) F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB O.I. C.G. H.G.
127.6 99.9 290.3 At1g02160 839554 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM O.I. C.G. H.G.
127.0 99.9 69.3 At1g54160 841856 NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5) Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought. O.I. C.G. H.G.
125.0 99.9 26.7 At5g11320 831003 YUC4 (YUCCA4) Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development. O.I. C.G. H.G.
123.1 99.9 74.4 At5g19570 832077 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
122.3 99.9 61.4 At5g47360 834783 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA O.I. C.G. H.G.
117.4 99.9 186.8 At3g01130 821228 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
116.2 99.9 58.3 At2g40150 818606 - F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
114.2 99.9 623.3 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
113.3 99.9 303.6 At2g32700 817830 WD-40 repeat family protein Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. O.I. C.G. H.G.
112.6 99.9 81.5 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. O.I. C.G. H.G.
109.6 99.9 51.5 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
109.2 99.9 37.2 At2g15630 816056 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
105.5 99.9 304.1 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
105.2 99.9 21.6 At2g34320 817994 nucleic acid binding F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABO O.I. C.G. H.G.
104.8 99.9 42.9 At3g53450 824513 unknown protein F:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:cellular_component unknown;BOPFMA O.I. C.G. H.G.
103.6 99.9 56.8 At3g18800 821413 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
99.5 99.9 221.9 At3g07030 3768790 nucleic acid binding F:nucleic acid binding;P:unknown;C:unknown O.I. C.G. H.G.
97.7 99.9 774.5 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
97.3 99.9 98.8 At4g08220 3770291 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
92.7 99.9 40.4 At3g62050 825378 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM O.I. C.G. H.G.
92.6 99.9 65.5 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
90.0 99.9 52.2 At1g61920 842487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
88.9 99.9 35.4 At5g40630 834062 ubiquitin family protein F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV O.I. C.G. H.G.
81.8 99.9 167.6 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
80.9 99.9 50.9 At2g42110 818811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
80.9 99.9 36.1 At4g01990 828172 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
80.8 99.9 244.0 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
76.9 99.9 45.6 At5g64600 836581 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus, cytoplasm;P O.I. C.G. H.G.
76.1 99.9 40.4 At4g36830 829836 GNS1/SUR4 membrane family protein F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV O.I. C.G. H.G.
72.7 99.9 708.3 At5g58420 835955 40S ribosomal protein S4 (RPS4D) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;MOAFP O.I. C.G. H.G.
72.6 99.9 335.8 At5g20180 832141 ribosomal protein L36 family protein F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFM O.I. C.G. H.G.
70.5 99.9 94.3 At3g07510 819939 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
69.9 99.9 39.5 At5g02220 831792 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
69.5 99.9 20.9 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
66.5 99.8 40.1 At1g03200 839553 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
66.4 99.8 180.5 At3g62790 825454 NADH-ubiquinone oxidoreductase-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOM O.I. C.G. H.G.
65.2 99.8 97.9 At2g13690 815853 PRLI-interacting factor, putative F:transcription regulator activity;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
61.9 99.8 29.4 At4g32970 829434 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
61.6 99.8 31.5 At1g62720 842570 - F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
60.5 99.8 10.5 At2g05930 3767925 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
59.5 99.8 56.0 At3g17700 821037 CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1) cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels. O.I. C.G. H.G.
59.1 99.8 32.5 At1g70895 843428 CLE17 (CLAVATA3/ESR-RELATED 17) Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon. O.I. C.G. H.G.
58.9 99.8 62.3 At3g50250 824187 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
58.9 99.8 24.5 At4g17450 3770187 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
58.9 99.8 15.1 At4g19095 827648 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
58.1 99.8 66.2 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
57.8 99.8 5.6 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
56.8 99.8 35.1 At5g38730 833864 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
56.5 99.8 269.6 At2g28020 817346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
56.4 99.8 21.0 At1g77360 844072 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA O.I. C.G. H.G.
56.0 99.8 78.0 At3g12140 820389 emsy N terminus domain-containing protein / ENT domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
55.1 99.8 39.6 At1g68120 843140 BPC3 (BASIC PENTACYSTEINE 3) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P O.I. C.G. H.G.
55.1 99.8 25.1 At1g10750 837618 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB O.I. C.G. H.G.
54.7 99.8 38.0 At3g47390 823893 cytidine/deoxycytidylate deaminase family protein F:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMV O.I. C.G. H.G.
54.4 99.8 13.9 At3g49400 824102 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBOFP O.I. C.G. H.G.
53.7 99.8 140.9 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
53.7 99.8 76.9 At3g26640 822276 LWD2 (LIGHT-REGULATED WD 2) F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
53.1 99.8 334.2 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
53.0 99.8 39.6 At2g18590 816374 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV O.I. C.G. H.G.
52.8 99.8 192.3 At2g42740 818874 RPL16A encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment. O.I. C.G. H.G.
52.5 99.8 36.4 At3g45590 823701 ATSEN1 (SPLICING ENDONUCLEASE 1) Encodes a catalytic subunit of tRNA splicing endonuclease. O.I. C.G. H.G.
52.0 99.8 74.5 At1g34640 840368 unknown protein F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P O.I. C.G. H.G.
51.7 99.8 63.3 At3g62450 825418 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
51.4 99.8 324.1 At4g15770 827257 RNA binding / protein binding F:protein binding, RNA binding;P:ribosome assembly, ribosome biogenesis;C:nucleus;MFOPA O.I. C.G. H.G.
51.0 99.8 62.0 At2g40935 818692 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO O.I. C.G. H.G.
51.0 99.8 61.3 At2g39550 818540 PGGT-I encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways. O.I. C.G. H.G.
50.9 99.8 70.9 At5g40490 834047 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA O.I. C.G. H.G.
48.6 99.8 55.7 At4g16240 827318 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
47.9 99.8 33.3 At1g74280 843768 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BPOFAM O.I. C.G. H.G.
47.3 99.8 34.1 At4g23950 828495 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBP O.I. C.G. H.G.
47.2 99.8 25.9 At5g24330 832503 ATXR6 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. O.I. C.G. H.G.
47.1 99.8 56.2 At5g47410 834788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
47.0 99.8 8.5 At2g11130 3768370 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
46.7 99.8 598.6 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1438.8	100.0	232.7	At4g11640	826769	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.	O.I.	C.G.	H.G.
1316.5	100.0	219.8	At1g34150	840314	tRNA pseudouridine synthase family protein	F:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAP	O.I.	C.G.	H.G.
852.1	100.0	164.7	At2g07777	2745461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
300.1	100.0	54.6	At4g01930	828198	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
293.1	100.0	145.5	At3g02000	820200	ROXY1	Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).	O.I.	C.G.	H.G.
289.6	100.0	214.9	At3g24315	822020	AtSec20	F:molecular_function unknown;P:unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
275.3	100.0	167.1	At4g18400	827570	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBF	O.I.	C.G.	H.G.
264.5	100.0	85.8	At1g08390	837359	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MP	O.I.	C.G.	H.G.
242.1	100.0	291.1	At1g21570	838758	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
228.9	100.0	62.0	At1g04150	839249	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
222.2	100.0	1094.6	At2g46540	819266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
221.0	100.0	37.7	At4g29540	829075	bacterial transferase hexapeptide repeat-containing protein	F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity, transferase activity;P:lipid biosynthetic process;C:unknown;BOAPFMV	O.I.	C.G.	H.G.
216.5	100.0	153.7	At5g06190	830506	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
202.1	100.0	61.9	At4g28330	828948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
197.1	100.0	621.4	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
195.3	100.0	39.8	At4g02670	828206	AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPF	O.I.	C.G.	H.G.
189.4	100.0	231.2	At5g42220	834227	ubiquitin family protein	F:unknown;P:protein modification process;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
182.8	100.0	45.6	At1g65080	842816	OXA1 family protein	F:binding;P:protein insertion into membrane;C:membrane;BMFOP	O.I.	C.G.	H.G.
172.9	100.0	106.2	At1g32290	840121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
153.1	99.9	107.2	At3g57320	824899	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
152.9	99.9	543.5	At3g62400	825413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
147.1	99.9	64.1	At5g06590	830547	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
143.9	99.9	46.8	At5g46640	834707	DNA-binding family protein	F:DNA binding;P:unknown;C:unknown;PBMOF	O.I.	C.G.	H.G.
137.7	99.9	138.9	At1g30040	839883	ATGA2OX2 (GIBBERELLIN 2-OXIDASE)	Encodes a gibberellin 2-oxidase. AtGA2OX2 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
136.3	99.9	96.3	At2g41460	818744	ARP	apurinic endonuclease-redox protein. It functions as an apurinic/apyrimidinic class II endonuclease, and is involved in DNA repair.	O.I.	C.G.	H.G.
128.6	99.9	21.6	At2g44590	819067	ADL1D (ARABIDOPSIS DYNAMIN-RELATED PROTEIN 1D)	F:GTP binding, GTPase activity;P:biological_process unknown;C:cellular_component unknown;MFPOB	O.I.	C.G.	H.G.
127.6	99.9	290.3	At1g02160	839554	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM	O.I.	C.G.	H.G.
127.0	99.9	69.3	At1g54160	841856	NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)	Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.	O.I.	C.G.	H.G.
125.0	99.9	26.7	At5g11320	831003	YUC4 (YUCCA4)	Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.	O.I.	C.G.	H.G.
123.1	99.9	74.4	At5g19570	832077	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
122.3	99.9	61.4	At5g47360	834783	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
117.4	99.9	186.8	At3g01130	821228	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
116.2	99.9	58.3	At2g40150	818606	-	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
114.2	99.9	623.3	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
113.3	99.9	303.6	At2g32700	817830	WD-40 repeat family protein	Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG.	O.I.	C.G.	H.G.
112.6	99.9	81.5	At1g53140	841748	dynamin family protein	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	O.I.	C.G.	H.G.
109.6	99.9	51.5	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
109.2	99.9	37.2	At2g15630	816056	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
105.5	99.9	304.1	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
105.2	99.9	21.6	At2g34320	817994	nucleic acid binding	F:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABO	O.I.	C.G.	H.G.
104.8	99.9	42.9	At3g53450	824513	unknown protein	F:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:cellular_component unknown;BOPFMA	O.I.	C.G.	H.G.
103.6	99.9	56.8	At3g18800	821413	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
99.5	99.9	221.9	At3g07030	3768790	nucleic acid binding	F:nucleic acid binding;P:unknown;C:unknown	O.I.	C.G.	H.G.
97.7	99.9	774.5	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
97.3	99.9	98.8	At4g08220	3770291	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
92.7	99.9	40.4	At3g62050	825378	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	C.G.	H.G.
92.6	99.9	65.5	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
90.0	99.9	52.2	At1g61920	842487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
88.9	99.9	35.4	At5g40630	834062	ubiquitin family protein	F:molecular_function unknown;P:protein modification process;C:chloroplast;MPOBFV	O.I.	C.G.	H.G.
81.8	99.9	167.6	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
80.9	99.9	50.9	At2g42110	818811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
80.9	99.9	36.1	At4g01990	828172	pentatricopeptide (PPR) repeat-containing protein	F:binding;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
80.8	99.9	244.0	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
76.9	99.9	45.6	At5g64600	836581	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus, cytoplasm;P	O.I.	C.G.	H.G.
76.1	99.9	40.4	At4g36830	829836	GNS1/SUR4 membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:integral to membrane;PFMOV	O.I.	C.G.	H.G.
72.7	99.9	708.3	At5g58420	835955	40S ribosomal protein S4 (RPS4D)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, nucleolus, membrane;MOAFP	O.I.	C.G.	H.G.
72.6	99.9	335.8	At5g20180	832141	ribosomal protein L36 family protein	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFM	O.I.	C.G.	H.G.
70.5	99.9	94.3	At3g07510	819939	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
69.9	99.9	39.5	At5g02220	831792	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
69.5	99.9	20.9	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
66.5	99.8	40.1	At1g03200	839553	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.4	99.8	180.5	At3g62790	825454	NADH-ubiquinone oxidoreductase-related	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOM	O.I.	C.G.	H.G.
65.2	99.8	97.9	At2g13690	815853	PRLI-interacting factor, putative	F:transcription regulator activity;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
61.9	99.8	29.4	At4g32970	829434	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
61.6	99.8	31.5	At1g62720	842570	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
60.5	99.8	10.5	At2g05930	3767925	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
59.5	99.8	56.0	At3g17700	821037	CNBT1 (CYCLIC NUCLEOTIDE-BINDING TRANSPORTER 1)	cyclic nucleotide-binding transporter 1, member of a family of cyclic nucleotide gated channels.	O.I.	C.G.	H.G.
59.1	99.8	32.5	At1g70895	843428	CLE17 (CLAVATA3/ESR-RELATED 17)	Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.	O.I.	C.G.	H.G.
58.9	99.8	62.3	At3g50250	824187	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
58.9	99.8	24.5	At4g17450	3770187	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
58.9	99.8	15.1	At4g19095	827648	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
58.1	99.8	66.2	At5g08460	830745	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
57.8	99.8	5.6	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
56.8	99.8	35.1	At5g38730	833864	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
56.5	99.8	269.6	At2g28020	817346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
56.4	99.8	21.0	At1g77360	844072	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBA	O.I.	C.G.	H.G.
56.0	99.8	78.0	At3g12140	820389	emsy N terminus domain-containing protein / ENT domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
55.1	99.8	39.6	At1g68120	843140	BPC3 (BASIC PENTACYSTEINE 3)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;P	O.I.	C.G.	H.G.
55.1	99.8	25.1	At1g10750	837618	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB	O.I.	C.G.	H.G.
54.7	99.8	38.0	At3g47390	823893	cytidine/deoxycytidylate deaminase family protein	F:in 6 functions;P:riboflavin biosynthetic process;C:unknown;BOAFPMV	O.I.	C.G.	H.G.
54.4	99.8	13.9	At3g49400	824102	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBOFP	O.I.	C.G.	H.G.
53.7	99.8	140.9	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
53.7	99.8	76.9	At3g26640	822276	LWD2 (LIGHT-REGULATED WD 2)	F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
53.1	99.8	334.2	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
53.0	99.8	39.6	At2g18590	816374	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV	O.I.	C.G.	H.G.
52.8	99.8	192.3	At2g42740	818874	RPL16A	encodes a cytosolic ribosomal protein L16, which is a constituent of 60S large ribosomal complex. Gene is expressed in root stele and anthers and expression is induced by auxin treatment.	O.I.	C.G.	H.G.
52.5	99.8	36.4	At3g45590	823701	ATSEN1 (SPLICING ENDONUCLEASE 1)	Encodes a catalytic subunit of tRNA splicing endonuclease.	O.I.	C.G.	H.G.
52.0	99.8	74.5	At1g34640	840368	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:endomembrane system;P	O.I.	C.G.	H.G.
51.7	99.8	63.3	At3g62450	825418	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
51.4	99.8	324.1	At4g15770	827257	RNA binding / protein binding	F:protein binding, RNA binding;P:ribosome assembly, ribosome biogenesis;C:nucleus;MFOPA	O.I.	C.G.	H.G.
51.0	99.8	62.0	At2g40935	818692	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMFO	O.I.	C.G.	H.G.
51.0	99.8	61.3	At2g39550	818540	PGGT-I	encodes the beta subunit of geranylgeranyl transferase (GGT-IB), involved in both ABA-mediated and auxin signaling pathways.	O.I.	C.G.	H.G.
50.9	99.8	70.9	At5g40490	834047	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVA	O.I.	C.G.	H.G.
48.6	99.8	55.7	At4g16240	827318	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
47.9	99.8	33.3	At1g74280	843768	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BPOFAM	O.I.	C.G.	H.G.
47.3	99.8	34.1	At4g23950	828495	-	F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBP	O.I.	C.G.	H.G.
47.2	99.8	25.9	At5g24330	832503	ATXR6	Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.	O.I.	C.G.	H.G.
47.1	99.8	56.2	At5g47410	834788	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
47.0	99.8	8.5	At2g11130	3768370	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
46.7	99.8	598.6	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.

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GSM ID	GSM133778
Assay name	Lindsey_1-2_globular-apical_Rep2_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133778 Assay name Lindsey_1-2_globular-apical_Rep2_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133778

Assay name Lindsey_1-2_globular-apical_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues