Microarray experiments to specifically-expressed genes

GSM ID GSM133777
Assay name Lindsey_1-4_globular-basal_Rep1_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2511.5100.088.6At3g15170820748CUC1 (CUP-SHAPED COTYLEDON1)Encodes a transcription factor involved in shoot apical meristem formation and auxin-mediated lateral root formation. The gene is thought not to be involved in stress responses (NaCl, auxins, ethylene). Cuc mutant was first recognized at the heart stage, where embryos lacking two distinct bulges of cotyledonary primordia were observed.O.I.C.G.H.G.
1896.5100.0370.1At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).O.I.C.G.H.G.
1063.0100.0112.2At5g66350836767SHI (SHORT INTERNODES)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Shi mutant is dominant, has dwarf phenotype. Loss of function mutations have no observable phenotype. Putative zinc finger protein. Involved in the response to gibberellic acid.O.I.C.G.H.G.
574.0100.0276.3At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
473.8100.0227.4At5g06190830506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
405.0100.0395.6At1g53520841787chalcone-flavanone isomerase-relatedF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBFO.I.C.G.H.G.
326.7100.0158.7At3g42660823286nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAVO.I.C.G.H.G.
315.4100.0786.0At1g18250838405ATLP-1encodes a thaumatin-like proteinO.I.C.G.H.G.
301.2100.0116.2At2g39725818557complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:mitochondrion;FMPOO.I.C.G.H.G.
258.9100.0107.6At2g45320819140unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PBO.I.C.G.H.G.
254.4100.076.2At1g04070839317TOM22-I (TRANSLOCASE OF OUTER MEMBRANE 22-I)Subunit of the TOM complex, a translocase in the outer mitochondrial membrane that selectively allows proteins with a mitochondrial targeting sequence to enter the mitochondrion.O.I.C.G.H.G.
217.7100.061.6At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
186.5100.093.2At5g04620830339ATBIOF (BIOTIN F)The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.O.I.C.G.H.G.
175.9100.0294.1At1g10030837538ERG28 (Arabidopsis homolog of yeast ergosterol28)F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPOO.I.C.G.H.G.
175.7100.01038.4At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
158.199.963.2At3g45590823701ATSEN1 (SPLICING ENDONUCLEASE 1)Encodes a catalytic subunit of tRNA splicing endonuclease.O.I.C.G.H.G.
157.499.9241.3At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
147.899.9154.0At3g17300820993-F:unknown;P:unknown;C:unknown;POO.I.C.G.H.G.
146.699.951.2At1g70895843428CLE17 (CLAVATA3/ESR-RELATED 17)Member of a large family of putative ligands homologous to the Clavata3 gene. Consists of a single exon.O.I.C.G.H.G.
146.499.9148.9At3g63250825500HMT2 (HOMOCYSTEINE METHYLTRANSFERASE 2)Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.O.I.C.G.H.G.
144.999.9883.9At2g46540819266unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;PO.I.C.G.H.G.
138.999.9155.4At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
138.299.971.2At1g34150840314tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
134.199.9214.6At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
126.099.9305.5At5g62670836388AHA11 (Arabidopsis H(+)-ATPase 11)F:ATPase activity;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane, membrane;BMOFPAVO.I.C.G.H.G.
125.899.9117.0At3g12140820389emsy N terminus domain-containing protein / ENT domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
121.299.9295.5At1g476253767388-pseudogene of seven transmembrane domain proteinO.I.C.G.H.G.
120.699.9482.7At3g62400825413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
116.699.961.1At2g42110818811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
116.099.9184.2At5g61220836243complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
113.399.934.9At3g03750821169SET domain-containing proteinF:zinc ion binding, histone-lysine N-methyltransferase activity;P:chromatin modification;C:nucleus;MPFOBO.I.C.G.H.G.
108.899.978.2At1g14990838064unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
104.399.9251.8At1g29880839866glycyl-tRNA synthetase / glycine--tRNA ligaseF:glycine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:response to cadmium ion, glycyl-tRNA aminoacylation;C:mitochondrion;OBAMFPO.I.C.G.H.G.
102.699.9165.5At3g06310819805NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPOO.I.C.G.H.G.
99.899.931.8At3g07530819942unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFABO.I.C.G.H.G.
99.299.949.1At1g62340842532ALE1 (ABNORMAL LEAF-SHAPE 1)Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plantsO.I.C.G.H.G.
81.999.9527.9At5g05370830419ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;PO.I.C.G.H.G.
80.799.9251.5At3g06610819840DNA-binding enhancer protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
80.199.940.9At1g28210839715ATJ1DnaJ homolog AtJ1 (atj)O.I.C.G.H.G.
76.599.975.9At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
76.099.924.8At4g02670828206AtIDD12 (Arabidopsis thaliana Indeterminate(ID)-Domain 12)F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular, chloroplast;MOPFO.I.C.G.H.G.
72.399.920.3At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
71.599.947.9At4g33100829447-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
69.799.9360.0At3g25530822139GLYR1 (GLYOXYLATE REDUCTASE 1)Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance.O.I.C.G.H.G.
64.899.830.5At4g03610825661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
64.199.835.8At1g72990843630BGAL17 (beta-galactosidase 17)F:cation binding, beta-galactosidase activity, catalytic activity;P:lactose catabolic process, using glucoside 3-dehydrogenase, carbohydrate metabolic process, lactose catabolic process via UDP-galactose, lactose catabolic process;C:mitochondrion, beta-galactosidase complex;MPBFOAO.I.C.G.H.G.
63.299.8141.9At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
59.999.836.6At5g02220831792unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
58.999.8142.1At1g63100842613scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMBO.I.C.G.H.G.
57.499.833.5At5g45610834601unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
54.999.8292.1At5g20180832141ribosomal protein L36 family proteinF:structural constituent of ribosome;P:translation, ribosome biogenesis;C:ribosome, intracellular;BPOFMO.I.C.G.H.G.
54.999.8202.3At1g01210839481DNA-directed RNA polymerase III family proteinF:in 6 functions;P:RNA elongation, regulation of transcription, DNA-dependent, transcription, regulation of transcription;C:nucleus;MOFAPO.I.C.G.H.G.
53.499.850.0At1g04020839329BARD1 (BREAST CANCER ASSOCIATED RING 1)Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein–protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.O.I.C.G.H.G.
52.899.8766.1At3g10860820256ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;PO.I.C.G.H.G.
52.599.8214.5At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
52.499.822.8At4g01930828198DC1 domain-containing proteinF:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMOO.I.C.G.H.G.
52.299.8104.4At1g73960843733TAF2 (TBP-ASSOCIATED FACTOR 2)F:metallopeptidase activity, zinc ion binding;P:unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
52.299.854.9At4g21610828248LOL2 (LSD ONE LIKE 2)Contains the same novel zinc finger motif with LSD1, a negative regulator of cell death and defense response. Due to differential splicing, it encodes two different proteins, one of which contains an additional, putative DNA binding motif. Northern analysis demonstrated that LOL2 transcripts containing the additional DNA binding motif are predominantly upregulated after treatment with both virulent and avirulent Pseudomonas syringae pv maculicola strains.O.I.C.G.H.G.
50.799.816.1At4g28430828960reticulon family proteinF:unknown;P:biological_process unknown;C:endoplasmic reticulum, chloroplast;MPOFO.I.C.G.H.G.
50.499.8413.7At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
49.499.8148.3At4g3080082920340S ribosomal protein S11 (RPS11B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit;MOBAFPO.I.C.G.H.G.
49.399.8763.5At1g76200843953unknown proteinF:molecular_function unknown;P:biological_process unknown;C:respiratory chain complex I;FPOO.I.C.G.H.G.
48.399.814.6At2g34320817994nucleic acid bindingF:nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;PABOO.I.C.G.H.G.
47.799.8955.9At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
47.499.8700.2At5g42300834235UBL5 (UBIQUITIN-LIKE PROTEIN 5)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MFPOO.I.C.G.H.G.
46.899.89.5At1g44740841038unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
45.899.853.2At2g25355817074exonuclease-relatedF:RNA binding;P:N-terminal protein myristoylation;C:cellular_component unknown;MFOPAO.I.C.G.H.G.
44.899.825.5At3g53220824488thioredoxin family proteinF:unknown;P:cell redox homeostasis;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
44.799.831.5At5g03050831689unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
43.799.8578.7At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
41.499.8264.4At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
41.399.830.9At1g74280843768hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BPOFAMO.I.C.G.H.G.
40.099.838.1At3g06740819859zinc finger (GATA type) family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PFMOO.I.C.G.H.G.
39.699.8387.3At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
39.499.855.3At2g35750818147unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
39.299.851.4At5g47810834832PFK2 (PHOSPHOFRUCTOKINASE 2)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.C.G.H.G.
39.299.829.2At5g41850834190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFO.I.C.G.H.G.
36.999.751.0At5g07280830619EMS1 (EXCESS MICROSPOROCYTES1)Basic leucine zipper (bZIP) transcription factor. Nuclear localization. Involved in light-regulated transcriptional activation of G-box-containing promoters. Negatively regulated by Cop1. Although cytokinins do not appear to affect the gene's promoter activity, they appear to stabilize the protein. HY5 plays a role in anthocyanin accumulation in far-red light and blue light, but not in red light or in the dark. Mutant studies showed that the gene product is involved in the positive regulation of the PHYA-mediated inhibition of hypocotyl elongation. Binds to G- and Z-boxes, and other ACEs, but not to E-box. Loss of function mutation shows ABA resistant seedling phenotypes suggesting involvement for HY5 in mediating ABA responses. Binds to the promoter of ABI5 and regulates its expression. ems1 mutants lack the tapetum. Acts as regulator of anther cell differentiationO.I.C.G.H.G.
35.799.7558.5At5g59870836109HTA6Encodes HTA6, a histone H2A protein.O.I.C.G.H.G.
35.699.7189.7At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
34.999.790.6At3g07410819929AtRABA5b (Arabidopsis Rab GTPase homolog A5b)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane;MOFPBVAO.I.C.G.H.G.
34.799.7110.8At5g50370835104adenylate kinase, putativeF:nucleobase, nucleoside, nucleotide kinase activity, nucleotide kinase activity, adenylate kinase activity, ATP binding, phosphotransferase activity, phosphate group as acceptor;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process, anaerobic respiration, nucleotide metabolic process;C:mitochondrion, plasma membrane, plastid;BOMFPAO.I.C.G.H.G.
34.599.7481.2At1g51650841590ATP synthase epsilon chain, mitochondrialF:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP biosynthetic process, ATP synthesis coupled proton transport;C:mitochondrion;MPOFO.I.C.G.H.G.
34.099.754.5At4g29660829087EMB2752 (EMBRYO DEFECTIVE 2752)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
34.099.744.0At5g58980836015ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOPO.I.C.G.H.G.
33.899.7164.5At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
33.499.721.3At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
33.099.7459.1At3g53730824540histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
32.299.7126.6At4g3455582960740S ribosomal protein S25, putativeF:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOAO.I.C.G.H.G.
31.799.776.9At1g31335840022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
31.599.782.0At2g07708815383unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
31.499.7106.8At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.099.7102.4At5g14640831316SK13 (SHAGGY-LIKE KINASE 13)F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MPOFBVAO.I.C.G.H.G.
30.999.727.4At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
30.199.767.7At2g20585816581NFD6 (NUCLEAR FUSION DEFECTIVE 6)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
29.599.7107.8At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFO.I.C.G.H.G.
29.199.767.0At1g50510841473indigoidine synthase A family proteinF:unknown;P:biological_process unknown;C:plasma membrane;OBFMPO.I.C.G.H.G.
28.699.7298.6At5g48480834903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
28.599.7709.3At3g5634082480140S ribosomal protein S26 (RPS26C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MFOPAO.I.C.G.H.G.
28.599.719.9At4g32970829434unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.



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