Microarray experiments to specifically-expressed genes

GSM ID GSM133776
Assay name Lindsey_1-1_globular-apical_Rep1_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1814.8100.087.3At5g37140833686tRNA-splicing endonuclease positive effector-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
1579.5100.0104.9At5g58830836000identical protein binding / serine-type endopeptidaseF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMO.I.C.G.H.G.
1343.9100.0123.7At1g53790841816F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
1151.3100.0126.6At4g02750828187pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:mitochondrion;POMFBO.I.C.G.H.G.
917.4100.058.0At1g02550837879invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
749.9100.0232.7At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).O.I.C.G.H.G.
691.5100.0190.2At3g23200821898unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
642.0100.0153.5At1g34150840314tRNA pseudouridine synthase family proteinF:pseudouridine synthase activity;P:tRNA processing, pseudouridine synthesis;C:cellular_component unknown;BOMFAPO.I.C.G.H.G.
596.8100.0117.4At1g26660839206c-myc binding protein, putative / prefoldin, putativeF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPABO.I.C.G.H.G.
580.9100.0238.0At1g57770842152amine oxidase familyF:oxidoreductase activity;P:unknown;C:chloroplast;OBMPAFO.I.C.G.H.G.
557.2100.096.8At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
543.4100.0432.1At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
490.3100.0191.3At4g35530829705phosphatidylinositolglycan-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
401.4100.0564.5At5g54220835510-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
368.3100.0194.3At4g12760826888unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
364.0100.0192.7At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
348.2100.0246.0At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
333.0100.0155.4At1g18520838433TET11 (TETRASPANIN11)Member of TETRASPANIN familyO.I.C.G.H.G.
311.2100.0135.0At5g48370834890thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:unknown;C:peroxisome;BMOFPAO.I.C.G.H.G.
292.2100.0221.1At2g44520819059COX10 (cytochrome c oxidase 10)F:protoheme IX farnesyltransferase activity, prenyltransferase activity;P:heme biosynthetic process;C:integral to membrane, mitochondrial membrane;OBMFAPO.I.C.G.H.G.
291.4100.0178.4At5g06190830506unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
291.0100.0159.7At1g18180838397oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:plasma membrane;OBFMPO.I.C.G.H.G.
271.4100.067.8At3g27330822354zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBVO.I.C.G.H.G.
270.0100.0484.9At1g74260843766PUR4 (purine biosynthesis 4)Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.O.I.C.G.H.G.
258.0100.035.3At5g58630835977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMPFO.I.C.G.H.G.
237.3100.0147.1At2g38460818427ATIREG1 (IRON-REGULATED PROTEIN 1)F:transporter activity;P:iron ion transport;C:integral to membrane;MFPOBO.I.C.G.H.G.
232.5100.0290.6At2g02515814781unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
225.9100.0167.3At5g17620831628-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
218.8100.091.9At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
218.4100.0132.3At5g13960831244SUVH4 (SU(VAR)3-9 HOMOLOG 4)Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.O.I.C.G.H.G.
217.5100.0228.4At1g53290841763galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOBO.I.C.G.H.G.
205.7100.0368.7At1g02160839554-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO.I.C.G.H.G.
199.6100.0118.6At3g15720820815glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAVO.I.C.G.H.G.
198.2100.0311.8At3g62790825454NADH-ubiquinone oxidoreductase-relatedF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOMO.I.C.G.H.G.
187.0100.082.1At1g58050842172helicase domain-containing proteinF:helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;BMOFPVAO.I.C.G.H.G.
169.2100.0130.0At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
160.599.9137.3At1g09370837459enzyme inhibitor/ pectinesteraseF:enzyme inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
158.499.935.0At5g18540831972unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBAO.I.C.G.H.G.
156.999.942.6At4g25600828665ShTK domain-containing proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, iron ion binding;P:protein metabolic process;C:unknown;MPBOVO.I.C.G.H.G.
145.599.980.9At5g47630834813mtACP3 (mitochondrial acyl carrier protein 3)Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.O.I.C.G.H.G.
143.399.963.8At2g46410819249CPC (CAPRICE)Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.O.I.C.G.H.G.
143.099.9123.4At5g19620832082OEP80 (OUTER ENVELOPE PROTEIN OF 80 KDA)AtOEP80 is paralog to the chloroplastic protein translocation channel Toc75O.I.C.G.H.G.
142.899.9368.7At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
141.499.994.7At1g06050837114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
138.399.9147.7At5g08535830753D111/G-patch domain-containing proteinF:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFOO.I.C.G.H.G.
137.499.9121.1At1g34640840368unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
135.299.9286.2At4g291208290336-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
129.599.9249.4At5g53650835446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
125.099.9219.4At3g48970824058copper-binding family proteinF:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:unknown;PBOO.I.C.G.H.G.
122.399.9230.2At1g7775084411130S ribosomal protein S13, chloroplast, putativeF:structural constituent of ribosome, RNA binding, nucleic acid binding;P:translation;C:mitochondrion, small ribosomal subunit, chloroplast, mitochondrial small ribosomal subunit;BOPMAFO.I.C.G.H.G.
114.299.9287.9At4g29285829050LCR24 (Low-molecular-weight cysteine-rich 24)Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family.O.I.C.G.H.G.
109.599.959.3At2g42110818811unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
108.499.955.4At5g17250831589catalytic/ transferaseF:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endomembrane system;MFOBPO.I.C.G.H.G.
108.299.992.9At1g21090838705hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:anchored to membrane;PMFOBO.I.C.G.H.G.
107.899.9230.2At1g10030837538ERG28 (Arabidopsis homolog of yeast ergosterol28)F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPOO.I.C.G.H.G.
105.599.9102.0At5g40490834047RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
99.499.936.5At3g19300821464protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
98.599.9171.8At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
94.799.970.8At5g23720832437PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.O.I.C.G.H.G.
92.999.9201.1At5g09370830796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
91.599.965.1At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
90.499.965.0At1g04020839329BARD1 (BREAST CANCER ASSOCIATED RING 1)Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein–protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.O.I.C.G.H.G.
88.899.9154.0At1g17770838355SUVH7 (SU(VAR)3-9 HOMOLOG 7)Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.O.I.C.G.H.G.
88.599.9154.8At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
87.699.9113.5At2g20515816573unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
87.299.9152.5At3g06310819805NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family proteinF:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPOO.I.C.G.H.G.
87.199.962.6At3g58100824979PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.O.I.C.G.H.G.
86.899.995.7At1g12400837795DNA bindingF:DNA binding;P:nucleotide-excision repair;C:endomembrane system;MPOO.I.C.G.H.G.
85.999.976.4At5g38180833798protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
84.599.949.7At3g25160822107ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFO.I.C.G.H.G.
83.999.986.7At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.C.G.H.G.
83.999.967.7At1g64185842723lactoylglutathione lyase family protein / glyoxalase I family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;PBOO.I.C.G.H.G.
83.199.931.0At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
79.199.9696.7At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
78.699.916.9At2g18650816380MEE16 (maternal effect embryo arrest 16)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFVO.I.C.G.H.G.
78.099.918.1At4g12740826886adenine-DNA glycosylase-related / MYH-relatedF:hydrolase activity, 4 iron, 4 sulfur cluster binding, catalytic activity, endonuclease activity;P:DNA repair, base-excision repair;C:unknown;MOBFPVAO.I.C.G.H.G.
77.899.9542.8At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
75.199.9102.6At5g59810836102SBT5.4F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:unknown;BPOFAMO.I.C.G.H.G.
74.699.930.7At3g56810824848unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
73.599.934.7At3g09660820123MCM8F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:cellular_component unknown;MOFPABVO.I.C.G.H.G.
73.499.968.4At5g61330836254rRNA processing protein-relatedF:molecular_function unknown;P:biological_process unknown;C:nucleus;MOBFPVAO.I.C.G.H.G.
73.299.9265.6At1g12910837849ATAN11 (ANTHOCYANIN11)Encodes a protein with similarity to the petunia WD repeat protein an11.O.I.C.G.H.G.
73.299.9105.9At2g45590819167protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
72.899.9190.3At4g3455582960740S ribosomal protein S25, putativeF:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOAO.I.C.G.H.G.
72.799.946.5At1g07290837240nucleotide-sugar transmembrane transporterF:nucleotide-sugar transmembrane transporter activity;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
72.099.976.1At4g10620826654-F:unknown;P:biological_process unknown;C:chloroplast;BMFOPAO.I.C.G.H.G.
71.899.979.8At1g55170841960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
71.799.922.0At4g03230828018ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 6 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
70.499.9194.4At2g35605818127SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OPBFMVO.I.C.G.H.G.
69.499.9128.0At3g19790821516unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
67.399.8208.8At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
67.099.8222.2At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
66.899.8339.0At2g22425816774peptidaseF:peptidase activity;P:signal peptide processing;C:endomembrane system, signal peptidase complex, integral to membrane;MFPOO.I.C.G.H.G.
66.499.844.9At1g61920842487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
65.699.865.5At1g32290840121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
65.299.856.6At2g26760817217CYCB1F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVO.I.C.G.H.G.
64.199.899.0At3g13845820597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
63.399.8135.8At5g40300834028integral membrane protein, putativeF:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;POMO.I.C.G.H.G.
63.299.848.9At1g54160841856NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.O.I.C.G.H.G.
62.599.8127.4At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.



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