Microarray experiments to specifically-expressed genes

GSM ID GSM133775
Assay name Lindsey_1-27_torpedo-meristem_Rep3_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
4657.5100.01096.8At2g20710816599pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMBO.I.C.G.H.G.
4000.4100.0596.8At3g49710824133pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
3248.4100.0390.4At5g44150834438unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMBOO.I.C.G.H.G.
2093.2100.0309.0At4g39235830079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
1754.7100.0402.0At3g21430821697--O.I.C.G.H.G.
1616.6100.0594.9At2g07696815372ribosomal protein S7 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, small ribosomal subunit, intracellular;BOPMAFO.I.C.G.H.G.
1181.6100.0933.3At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
1178.3100.0503.8At1g55460841993Kin17 DNA-binding protein-relatedF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVAO.I.C.G.H.G.
1092.7100.0675.7At3g13070820495CBS domain-containing protein / transporter associated domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFAO.I.C.G.H.G.
1050.2100.0235.9At5g23720832437PHS1 (PROPYZAMIDE-HYPERSENSITIVE 1)Encodes a protein tyrosine phosphatase Propyzamide-Hypersensitive 1 (PHS1). One of the mutant alleles, phs1-1, is hypersensitive to the microtubule-destabilizing drug propyzamide, suggesting that PHS1 may be involved in phosphorylation cascades that control the dynamics of cortical microtubules in plant cells. A second allele, phs1-3, is hypersensitive to abscisic acid, indicating a possible involvement of PHS1 in ABA signalling.O.I.C.G.H.G.
833.3100.0175.9At2g44980819106transcription regulatory protein SNF2, putativeF:transcription regulator activity, helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;MFBOPVAO.I.C.G.H.G.
766.3100.0138.3At3g57360824903unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO.I.C.G.H.G.
708.5100.0229.2At5g47455834795unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
685.4100.0389.1At5g55200835613co-chaperone grpE protein, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMFPAO.I.C.G.H.G.
680.8100.0273.8At3g26640822276LWD2 (LIGHT-REGULATED WD 2)F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
634.6100.0102.1At1g31760840063SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMVO.I.C.G.H.G.
612.2100.0100.5At5g03800831717EMB175 (EMBRYO DEFECTIVE 175)Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.O.I.C.G.H.G.
607.4100.0549.6At4g3455582960740S ribosomal protein S25, putativeF:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MFPOAO.I.C.G.H.G.
508.7100.0372.7At1g80700844409unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMFBPAO.I.C.G.H.G.
484.3100.0802.3At1g32560840150late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMOO.I.C.G.H.G.
482.5100.0109.2At1g30660839946nucleic acid bindingF:nucleic acid binding;P:DNA modification, DNA metabolic process;C:unknown;OBVPAO.I.C.G.H.G.
476.1100.0404.4At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
411.1100.0929.7At5g03345831867-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOO.I.C.G.H.G.
399.6100.083.5At1g68640843194PAN (PERIANTHIA)Encodes bZIP-transcription factor. Mutant plants have extra floral organs.O.I.C.G.H.G.
388.2100.058.4At2g20480816568unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
357.6100.0197.9At1g73177843651BNS (BONSAI)The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.O.I.C.G.H.G.
312.9100.0523.5At2g24020816936unknown proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
307.5100.0110.4At5g47580834808unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PO.I.C.G.H.G.
300.1100.0299.9At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
296.3100.0421.2At4g38490830005unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
291.7100.0175.8At5g18410831959PIR121distorted trichomes and exhibits a diffuse actin cytoskeletonO.I.C.G.H.G.
280.3100.0106.2At5g55790835673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
278.8100.01308.1At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
278.1100.086.7At3g19500821484ethylene-responsive protein -relatedF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
261.2100.0232.3At1g33265840221unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;PMBOFO.I.C.G.H.G.
260.5100.0185.0At1g73980843736phosphoribulokinase/uridine kinase family proteinF:adenylate cyclase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding;P:biosynthetic process, cAMP biosynthetic process, metabolic process;C:unknown;BOMPFAVO.I.C.G.H.G.
242.2100.0999.6At2g20530816575ATPHB6 (PROHIBITIN 6)F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAVO.I.C.G.H.G.
240.3100.0125.4At2g45920819200U-box domain-containing proteinF:ubiquitin-protein ligase activity;P:protein ubiquitination;C:ubiquitin ligase complex;POMFBAVO.I.C.G.H.G.
237.4100.0149.0At5g49100834969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFPVO.I.C.G.H.G.
213.5100.0308.2At5g16060831463-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOMO.I.C.G.H.G.
212.6100.0261.3At5g09830830843BolA-like family proteinF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;BOMFPO.I.C.G.H.G.
210.5100.0330.9At2g47640819377small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.C.G.H.G.
201.8100.0451.7At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
200.1100.0310.8At4g28260828941unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
197.0100.018.6At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
188.9100.0107.6At2g38370818418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
175.9100.045.1At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
175.4100.059.2At2g47230819336agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
173.5100.0449.7At1g62290842526aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPBO.I.C.G.H.G.
169.6100.0109.8At1g76510843984ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOBO.I.C.G.H.G.
162.899.953.7At2g17900816300SDG37Homology Subgroup S-ET - Protein containing an interrupted SET domain.O.I.C.G.H.G.
151.299.9135.3At5g11160830985APT5 (Adenine phosphoribosyltransferase 5)F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFPO.I.C.G.H.G.
146.499.9173.7At1g01160839278SSXT protein-related / transcription co-activator-relatedArabidopsis thaliana GRF1-interacting factor 2 (GIF2) mRNAO.I.C.G.H.G.
135.599.947.7At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
131.599.9577.7At1g70310843367SPDS2 (spermidine synthase 2)Spermidine synthase.O.I.C.G.H.G.
117.799.9151.5At4g37460829901SRFR1 (SUPPRESSOR OF RPS4-RLD 1)Encodes a tetratricopeptide repeat domain containing protein that shows sequence similarity to those of transcriptional repressors in other organisms.Involved in mediating effector-triggered immunity.O.I.C.G.H.G.
114.799.9149.6At5g15460831399MUB2 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 2)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PFO.I.C.G.H.G.
112.099.9845.7At3g53730824540histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
110.899.933.8At2g42150818815DNA-binding bromodomain-containing proteinF:DNA binding;P:unknown;C:nucleus;MOFPBVO.I.C.G.H.G.
109.099.950.6At5g25580832633-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
107.499.9246.9At5g38195833801protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
93.199.9277.4At5g27670832829HTA7 (HISTONE H2A 7)Encodes HTA7, a histone H2A protein.O.I.C.G.H.G.
91.799.965.2At1g42540840859ATGLR3.3member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
89.899.9109.3At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
88.499.943.3At5g43820834404-F:unknown;P:biological_process unknown;C:unknown;POFMBO.I.C.G.H.G.
88.199.953.9At5g35930833582AMP-dependent synthetase and ligase family proteinF:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
87.399.920.3At5g11310831002pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
84.499.91069.9At3g25920822189RPL15encodes a plastid ribosomal protein CL15, a constituent of the large subunit of the ribosomal complexO.I.C.G.H.G.
84.199.915.1At2g27250817267CLV3 (CLAVATA3)One of the three CLAVATA genes controlling the size of the shoot apical meristem (SAM) in Arabidopsis. Belongs to a large gene family called CLE for CLAVATA3/ESR-related. Encodes a stem cell-specific protein CLV3 presumed to be a precursor of a secreted peptide hormone. The deduced ORF encodes a 96-amino acid protein with an 18-amino acid N-terminal signal peptide. The functional form of CLV3 (MCLV3) is a posttranscriptionally modified 12-amino acid peptide, in which two of the three prolines were modified to hydroxyproline. CLV3 binds the ectodomain of the CLAVATA1 (CLV1) receptor-kinase. Regulates shoot and floral meristem development. Required for CLAVATA1 receptor-like kinase assembly into a signaling complex that includes KAPP and a Rho-related protein. It restricts its own domain of expression, the central zone (CZ) of the shoot apical meristem (SAM), by preventing differentiation of peripheral zone cells, which surround the CZ, into CZ cells and restricts overall SAM size by a separate, long-range effect on cell division rate. CLE domain of CLV3 is sufficient for function.O.I.C.G.H.G.
80.399.952.9At3g14020820616NF-YA6 (NUCLEAR FACTOR Y, SUBUNIT A6)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus, chloroplast;PMFOO.I.C.G.H.G.
77.799.9195.1At3g23640821944HGL1 (heteroglycan glucosidase 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:chloroplast;BMFOPAO.I.C.G.H.G.
76.899.927.5At5g34460833360transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
76.799.9178.2At3g54420824608ATEP3encodes an EP3 chitinase that is expressed during somatic embryogenesis in 'nursing' cells surrounding the embryos but not in embryos themselves. The gene is also expressed in mature pollen and growing pollen tubes until they enter the receptive synergid, but not in endosperm and integuments as in carrot. Post-embryonically, expression is found in hydathodes, stipules, root epidermis and emerging root hairs.O.I.C.G.H.G.
76.599.9667.2At1g48440841265unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFO.I.C.G.H.G.
75.499.9348.6At3g61860825359RSP31encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.O.I.C.G.H.G.
75.499.9216.1At2g36390818212SBE2.1 (starch branching enzyme 2.1)Encodes a starch branching enzyme (EC.2.4.1.18) similar to SBE2 from maize and rice. Expressed throughout plant tissues.O.I.C.G.H.G.
75.099.936.2At1g15480838118DNA bindingF:DNA binding;P:biological_process unknown;C:unknown;PMOFABO.I.C.G.H.G.
74.199.919.6At1g58160842183jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
73.499.913.2At5g06400830528pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFAO.I.C.G.H.G.
72.199.9102.1At4g03960825706tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBMO.I.C.G.H.G.
71.299.9491.3At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
68.999.962.1At5g11100830978SYTDF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFOO.I.C.G.H.G.
65.399.849.6At1g67720843097leucine-rich repeat family protein / protein kinase family proteinF:protein binding, protein kinase activity, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
62.399.8214.9At3g02790820985zinc finger (C2H2 type) family proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;POO.I.C.G.H.G.
61.099.8110.5At2g47260819339WRKY23member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
61.099.848.0At1g54160841856NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.O.I.C.G.H.G.
59.999.833.5At5g11300831001CYC3B (MITOTIC-LIKE CYCLIN 3B FROM ARABIDOPSIS)mitotic-like cyclin, core cell cycle gene that is expressed only in roots (RT_PCR), portions with mitotic activity only (whole mount in situ).O.I.C.G.H.G.
59.899.8330.0At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
56.999.881.6At2g46920819306POL (poltergeist)Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.O.I.C.G.H.G.
56.399.8158.1At4g17110--O.I.C.G.H.G.
56.199.8147.4At3g29185822570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO.I.C.G.H.G.
54.099.822.6At1g14760838041KNATM (KNOX ARABIDOPSIS THALIANA MEINOX)F:transcription activator activity;P:leaf proximal/distal pattern formation;C:nucleus, cytoplasm;PO.I.C.G.H.G.
53.899.898.9At1g69800843316CBS domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPAFO.I.C.G.H.G.
53.699.8106.0At3g50660824229DWF4 (DWARF 4)Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate.O.I.C.G.H.G.
52.399.826.3At5g45060834537disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
51.399.811.6At5g65350836660histone H3F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MFPOO.I.C.G.H.G.
50.299.822.4At1g80060844346-F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;MPOO.I.C.G.H.G.
49.499.8319.7At3g02180821277SP1L3 (SPIRAL 1-LIKE3)SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
48.399.8317.1At2g2158081669640S ribosomal protein S25 (RPS25B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MFPOAO.I.C.G.H.G.
48.099.845.2At2g32590817819-F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPVO.I.C.G.H.G.



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