Microarray experiments to specifically-expressed genes

GSM ID GSM133774
Assay name Lindsey_1-26_torpedo-meristem_Rep2_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1734.0100.064.5At1g30950839982UFO (UNUSUAL FLORAL ORGANS)Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY.O.I.C.G.H.G.
905.0100.0263.4At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
811.7100.0141.0At4g23950828495-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBPO.I.C.G.H.G.
739.0100.0103.4At2g46250819233myosin heavy chain-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
670.5100.077.5At1g03100839573pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMBFO.I.C.G.H.G.
635.9100.046.5At1g12620837818pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.C.G.H.G.
579.3100.0283.0At1g13740837934AFP2 (ABI FIVE BINDING PROTEIN 2)Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.O.I.C.G.H.G.
552.8100.032.1At1g80580844397ethylene-responsive element-binding family proteinencodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
534.1100.089.5At2g18500816365OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)F:unknown;P:biological_process unknown;C:plasma membrane;PFOO.I.C.G.H.G.
490.7100.0601.4At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
460.1100.065.1At4g31610829288REM1 (REPRODUCTIVE MERISTEM 1)Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteinsO.I.C.G.H.G.
458.7100.057.7At2g32940817856AGO6 (ARGONAUTE 6)Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.O.I.C.G.H.G.
448.0100.0244.1At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
423.4100.085.5At3g51480824311ATGLR3.6 (GLUTAMATE RECEPTOR 3.6)member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
390.6100.076.0At2g38060818384PHT4Encodes an inorganic phosphate transporter (PHT4;2).O.I.C.G.H.G.
389.5100.0114.1At5g11020830969ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;MPOBFVAO.I.C.G.H.G.
377.5100.087.9At1g77720844108protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVAO.I.C.G.H.G.
294.0100.0381.4At3g070303768790nucleic acid bindingF:nucleic acid binding;P:unknown;C:unknownO.I.C.G.H.G.
285.6100.022.1At3g172603768760transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
282.4100.01316.6At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
282.3100.074.5At4g12990826912unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
279.3100.079.2At5g25470832621DNA bindingF:DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PO.I.C.G.H.G.
276.1100.040.7At2g223903768384-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
274.7100.043.3At4g32540829389YUC1 (YUCCA 1)Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin BiosynthesisO.I.C.G.H.G.
270.0100.0133.1At1g30480839927DRT111recombination and DNA-damage resistance protein (DRT111)O.I.C.G.H.G.
266.5100.0111.6At5g09230830782SRT2 (SIRTUIN 2)Encodes SRT2, a member of the SIR2 (sirtuin) family HDAC (histone deacetylase) (SRT1/AT5g55760, SRT2/AT5G09230).O.I.C.G.H.G.
261.7100.093.5At4g29240829045leucine-rich repeat family protein / extensin family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
255.4100.063.3At2g24650817001DNA binding / transcription factorF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:apoplast;PMO.I.C.G.H.G.
253.2100.0199.2At2g39220818507PLP6 (PATATIN-LIKE PROTEIN 6)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMFO.I.C.G.H.G.
252.8100.0106.5At3g46920823845protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
247.2100.0248.0At5g42480834255ARC6 (ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6)Shows homology to the cyanobacterial cell division protein Ftn2, mutant only has two mesophyll cell chloroplasts. Protein was localized to a ring at the center of the chloroplasts. Probably involved in functions in the assembly and/or stabilization of the plastid-dividing FtsZ ring, inhibiting FtsZ filament formation in the chloroplast.O.I.C.G.H.G.
246.6100.083.9At1g68120843140BPC3 (BASIC PENTACYSTEINE 3)F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO.I.C.G.H.G.
233.0100.074.9At4g00200828162DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
230.8100.0211.7At1g53460841781unknown proteinF:unknown;P:unknown;C:unknown;OMPFBAVO.I.C.G.H.G.
226.7100.050.9At3g23260821905F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
220.4100.0328.6At3g23640821944HGL1 (heteroglycan glucosidase 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:chloroplast;BMFOPAO.I.C.G.H.G.
212.9100.054.3At4g31060829233AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
210.4100.085.4At2g01120814641ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.O.I.C.G.H.G.
209.7100.0153.8At4g31850829314PGR3 (PROTON GRADIENT REGULATION 3)encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifsO.I.C.G.H.G.
205.2100.048.6At3g04980819658DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
196.4100.0342.2At2g27040817246AGO4 (ARGONAUTE 4)AGO4 is a member of a class of PAZ/PIWI domain containing proteins involved in siRNA mediated gene silencing.Loss of function mutations have reduced site specific CpNpG and CpHpH methylation and increased susceptibility to bacterial pathogens.O.I.C.G.H.G.
196.1100.099.3At5g38240833806serine/threonine protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
194.8100.033.3At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
190.9100.061.8At2g47230819336agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
188.8100.0152.9At1g63470842653DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.C.G.H.G.
188.6100.0694.7At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
187.2100.096.5At2g37560818332ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2)Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.O.I.C.G.H.G.
186.1100.083.8At1g54160841856NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.O.I.C.G.H.G.
185.3100.0229.8At5g55130835604CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)putative molybdopterin synthase sulphurylase (cnx5)O.I.C.G.H.G.
185.2100.088.7At2g32590817819-F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPVO.I.C.G.H.G.
184.6100.0107.9At5g06350830523bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
179.1100.028.6At3g50230824185leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
179.0100.058.1At1g23380838946KNAT6homeodomain transcription factor KNAT6, belonging to class I of KN transcription factor family (which also includes KNAT1 and KNAT2). Expression is increased in as and bop1 leaf mutants.O.I.C.G.H.G.
177.8100.027.0At4g25160828619protein kinase family proteinF:ubiquitin-protein ligase activity, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, protein ubiquitination, response to stress;C:ubiquitin ligase complex;MPOBFVAO.I.C.G.H.G.
174.2100.0158.2At3g28550822485proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVAO.I.C.G.H.G.
173.1100.044.8At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
168.7100.032.1At5g16850831548ATTERT (TELOMERASE REVERSE TRANSCRIPTASE)Encodes the catalytic subunit of telomerase reverse transcriptase. Involved in telomere homeostasis. Homozygous double mutants with ATR show gross morphological defects over a period of generations. TERT shows Class II telomerase activity in vitro, indicating that it can initiate de novo telomerase synthesis on non-telomeric DNA, often using a preferred position within the telomerase-bound RNA.O.I.C.G.H.G.
167.3100.0422.4At3g02110821207scpl25 (serine carboxypeptidase-like 25)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOBO.I.C.G.H.G.
167.3100.061.9At5g53090835389binding / catalytic/ oxidoreductaseF:oxidoreductase activity, binding, catalytic activity;P:multicellular organismal development, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
166.9100.0752.5At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
165.9100.096.2At1g07380837250ceramidase family proteinF:ceramidase activity;P:biological_process unknown;C:plasma membrane;BMFOPO.I.C.G.H.G.
160.499.9540.7At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
158.699.933.6At3g23740821956unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;FPOMBO.I.C.G.H.G.
158.199.954.2At4g19865827732kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMOBVFO.I.C.G.H.G.
155.599.955.2At2g01400814668unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
152.799.954.2At1g563108420843'-5' exonuclease domain-containing proteinF:3'-5' exonuclease activity, nucleic acid binding;P:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:intracellular;BOMPFO.I.C.G.H.G.
145.699.9100.7At2g37020818276DNA binding / sequence-specific DNA bindingF:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPAO.I.C.G.H.G.
145.399.949.4At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
144.299.944.8At4g02750828187pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:mitochondrion;POMFBO.I.C.G.H.G.
142.299.948.2At3g09660820123MCM8F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA replication initiation, DNA replication;C:cellular_component unknown;MOFPABVO.I.C.G.H.G.
139.199.939.3At4g19130827651DNA binding / nucleic acid binding / zinc ion bindingF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFAO.I.C.G.H.G.
138.899.943.0At1g12730837829cell division cycle protein-relatedF:molecular_function unknown;P:GPI anchor biosynthetic process;C:integral to membrane, endoplasmic reticulum membrane;MFPOO.I.C.G.H.G.
138.399.954.9At5g41850834190unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPFO.I.C.G.H.G.
137.399.964.8At2g35540818119DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMOPFAO.I.C.G.H.G.
136.999.9110.2At5g62800836401seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFO.I.C.G.H.G.
131.899.989.9At2g38370818418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
124.799.9207.0At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
124.199.940.4At1g01840839291unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
123.599.958.7At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
122.799.946.5At2g19930816512RNA-dependent RNA polymerase family proteinF:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMOO.I.C.G.H.G.
122.099.972.3At3g59790825148ATMPK10member of MAP KinaseO.I.C.G.H.G.
121.599.994.7At5g20300832152chloroplast outer membrane protein, putativeF:GTP binding;P:unknown;C:chloroplast outer membrane, intracellular;MPBOFO.I.C.G.H.G.
121.099.937.0At1g52530841684-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
120.599.9170.3At1g75510843887transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinF:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPOO.I.C.G.H.G.
117.899.918.2At5g07930830687MCT2 (mei2 C-Terminal RRM only like 2)a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.O.I.C.G.H.G.
116.099.944.3At2g12190815688cytochrome P450, putativeF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAVO.I.C.G.H.G.
115.499.9428.5At1g02840839262SR1SR1 is a plant homologue of the human general/alternative splicing factor SF2/ASF.O.I.C.G.H.G.
115.099.969.8At5g02820831314RHL2 (ROOT HAIRLESS 2)Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplicationO.I.C.G.H.G.
113.999.9200.8At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFO.I.C.G.H.G.
112.199.991.3At5g54930835584AT hook motif-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
111.799.933.1At1g31150840000transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.H.G.
111.599.950.5At4g34340829584TAF8 (TBP-ASSOCIATED FACTOR 8)F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPFOO.I.C.G.H.G.
110.499.928.6At3g62430825416F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
109.999.945.0At5g05350830417unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PFO.I.C.G.H.G.
109.299.969.0At5g09640830823SCPL19encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.O.I.C.G.H.G.
108.099.935.1At2g31150817671ATP binding / ATPase, coupled to transmembrane movement of ions, phosphorylative mechanismF:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism, ATP binding;P:ATP biosynthetic process;C:membrane;OMBFPVAO.I.C.G.H.G.
104.599.931.4At3g15605820802-F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
101.699.949.5At1g69440843276AGO7 (ARGONAUTE7)Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.O.I.C.G.H.G.
100.399.9101.0At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
98.799.971.2At5g55060835597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.



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