CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133773

Assay name Lindsey_1-25_torpedo-meristem_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3181.4 100.0 369.5 At3g59790 825148 ATMPK10 member of MAP Kinase O.I. C.G. H.G.
2852.5 100.0 329.1 At5g07700 830663 MYB76 (myb domain protein 76) Encodes a putative transcription factor (MYB76). O.I. C.G. H.G.
2692.5 100.0 442.5 At2g12050 3768039 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2426.3 100.0 1043.6 At3g18940 821426 clast3-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOA O.I. C.G. H.G.
1965.1 100.0 209.3 At1g67210 843041 proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV O.I. C.G. H.G.
1847.8 100.0 460.1 At3g17365 821000 catalytic/ methyltransferase F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OMBPFA O.I. C.G. H.G.
1776.0 100.0 422.9 At5g58480 835961 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
1690.8 100.0 702.1 At5g40300 834028 integral membrane protein, putative F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;POM O.I. C.G. H.G.
1534.1 100.0 138.8 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
1455.3 100.0 563.4 At4g36970 829851 remorin family protein F:DNA binding;P:unknown;C:plasma membrane, chloroplast;POMFB O.I. C.G. H.G.
1435.7 100.0 115.0 At3g56530 824820 anac064 (Arabidopsis NAC domain containing protein 64) F:transcription factor activity;P:regulation of transcription;C:unknown;P O.I. C.G. H.G.
1301.3 100.0 122.6 At5g20370 832159 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1297.8 100.0 455.5 At5g51620 835236 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1128.4 100.0 1414.5 At5g16970 831560 AT-AER (alkenal reductase) encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls O.I. C.G. H.G.
968.0 100.0 428.1 At1g16670 838236 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
952.1 100.0 641.4 At5g40190 834017 calmodulin-binding protein Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library. O.I. C.G. H.G.
853.0 100.0 93.6 At3g16730 820925 unknown protein F:unknown;P:unknown;C:cellular_component unknown;MOPF O.I. C.G. H.G.
811.5 100.0 162.1 At5g11510 831023 MYB3R-4 (myb domain protein 3R-4) Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 O.I. C.G. H.G.
789.5 100.0 225.3 At1g58250 842193 SAB (SABRE) SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots. O.I. C.G. H.G.
692.3 100.0 60.4 At4g11440 826748 binding F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO O.I. C.G. H.G.
684.8 100.0 466.4 At1g52730 841706 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA O.I. C.G. H.G.
660.5 100.0 247.6 At3g03900 821077 adenylylsulfate kinase, putative F:transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding;P:sulfate assimilation;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
655.1 100.0 82.4 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
639.7 100.0 258.7 At3g13445 820546 TBP1 (TATA BINDING PROTEIN 1) TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex O.I. C.G. H.G.
637.8 100.0 856.9 At1g79690 844308 atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3) F:hydrolase activity;P:unknown;C:cytosol, vacuole;BOPFMA O.I. C.G. H.G.
588.2 100.0 237.3 At3g20550 821601 DDL (DAWDLE) Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL. O.I. C.G. H.G.
555.1 100.0 89.7 At3g28330 822461 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
553.3 100.0 232.1 At1g18490 838430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
541.3 100.0 728.4 At3g63000 825475 NPL41 (NPL4-LIKE PROTEIN 1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
537.1 100.0 148.0 At3g12520 820431 SULTR4 Encodes a sulfate transporter that in induced under sulfate limitation. O.I. C.G. H.G.
529.3 100.0 241.9 At2g41710 818770 ovule development protein, putative F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
513.0 100.0 35.8 At5g19810 832101 proline-rich extensin-like family protein F:unknown;P:unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
490.8 100.0 164.3 At3g06660 819851 PAPA-1-like family protein / zinc finger (HIT type) family protein F:protein binding;P:unknown;C:chloroplast;OMFBP O.I. C.G. H.G.
490.3 100.0 132.2 At4g10890 826688 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM O.I. C.G. H.G.
461.9 100.0 65.9 At5g26080 832677 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
456.1 100.0 202.1 At3g19090 821444 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFB O.I. C.G. H.G.
450.9 100.0 80.1 At1g48880 841310 unknown protein F:unknown;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
447.8 100.0 124.2 At1g53260 841759 unknown protein F:unknown;P:unknown;C:endomembrane system;MPFOBVA O.I. C.G. H.G.
429.7 100.0 185.1 At3g27700 822392 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
424.1 100.0 277.4 At5g62640 836385 proline-rich family protein nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC O.I. C.G. H.G.
423.3 100.0 38.3 At4g27930 828906 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
374.8 100.0 80.0 At5g27910 832857 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
369.4 100.0 345.0 At1g48160 841235 signal recognition particle 19 kDa protein, putative / SRP19, putative F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP O.I. C.G. H.G.
357.3 100.0 96.4 At5g59360 836055 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
356.4 100.0 141.9 At1g26240 839165 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
351.8 100.0 51.5 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
345.3 100.0 50.3 At1g30780 839959 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBVFA O.I. C.G. H.G.
343.5 100.0 248.1 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
341.5 100.0 300.6 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. C.G. H.G.
336.5 100.0 219.9 At3g28550 822485 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA O.I. C.G. H.G.
333.6 100.0 26.1 At5g43000 834315 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP O.I. C.G. H.G.
331.9 100.0 66.9 At3g45750 823717 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB O.I. C.G. H.G.
324.2 100.0 1410.6 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
317.7 100.0 127.1 At5g41000 834102 YSL4 (YELLOW STRIPE LIKE 4) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.
293.3 100.0 408.1 At5g38195 833801 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
293.1 100.0 422.5 At1g71980 843529 protease-associated zinc finger (C3HC4-type RING finger) family protein F:peptidase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;OMPFBV O.I. C.G. H.G.
285.7 100.0 64.0 At4g27850 828898 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
284.9 100.0 159.3 At3g49710 824133 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
284.8 100.0 63.1 At4g32970 829434 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
283.4 100.0 28.2 At5g07930 830687 MCT2 (mei2 C-Terminal RRM only like 2) a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only. O.I. C.G. H.G.
268.6 100.0 63.0 At1g68330 843162 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF O.I. C.G. H.G.
259.1 100.0 188.2 At3g47590 823913 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOPFAMV O.I. C.G. H.G.
253.4 100.0 53.4 At1g70950 843433 - F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV O.I. C.G. H.G.
251.0 100.0 37.8 At1g62900 842591 O-methyltransferase, putative F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM O.I. C.G. H.G.
247.0 100.0 397.5 At5g04490 830328 VTE5 (vitamin E pathway gene5) Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis. O.I. C.G. H.G.
246.8 100.0 111.4 At5g38240 833806 serine/threonine protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
244.6 100.0 52.4 At3g10580 820225 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF O.I. C.G. H.G.
244.0 100.0 15.1 At2g22710 816801 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
243.5 100.0 26.0 At3g23350 821916 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
239.5 100.0 29.0 At5g32630 3771080 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
238.7 100.0 26.6 At3g63320 825507 protein phosphatase 2C-related / PP2C-related F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:unknown;MPOFVB O.I. C.G. H.G.
236.8 100.0 489.2 At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
235.4 100.0 53.4 At1g61510 3767597 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
235.0 100.0 109.9 At5g55060 835597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
223.3 100.0 16.8 At5g56070 835705 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
220.1 100.0 131.9 At3g16260 820872 TRZ4 (TRNASE Z 4) Encodes a tRNase Z. O.I. C.G. H.G.
220.0 100.0 12.1 At2g03320 814861 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
218.2 100.0 26.9 At5g41170 834119 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
213.4 100.0 226.4 At1g80790 844418 XH/XS domain-containing protein / XS zinc finger domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
212.8 100.0 90.3 At1g75340 843870 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVA O.I. C.G. H.G.
211.7 100.0 109.8 At5g58980 836015 ceramidase family protein F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP O.I. C.G. H.G.
211.5 100.0 32.3 At1g49900 841413 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA O.I. C.G. H.G.
211.3 100.0 105.9 At2g36480 818222 zinc finger (C2H2-type) family protein F:zinc ion binding;P:biological_process unknown;C:intracellular;OMFBP O.I. C.G. H.G.
206.6 100.0 38.7 At5g39370 833933 S-locus glycoprotein, putative F:sugar binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
205.4 100.0 64.9 At1g77720 844108 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA O.I. C.G. H.G.
202.4 100.0 34.3 At5g03600 831781 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFM O.I. C.G. H.G.
200.2 100.0 63.4 At2g04660 815008 APC2 a highly conserved ubiquitin-protein ligase involved in cell cycle regulation O.I. C.G. H.G.
198.7 100.0 118.8 At1g76510 843984 ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOB O.I. C.G. H.G.
197.5 100.0 55.7 At3g02980 821166 GCN5-related N-acetyltransferase (GNAT) family protein F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOPFAB O.I. C.G. H.G.
195.6 100.0 111.3 At1g70560 843393 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. O.I. C.G. H.G.
194.4 100.0 78.4 At5g18440 831962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
192.1 100.0 75.0 At3g03360 821272 F-box family protein F:unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
188.5 100.0 263.4 At4g17770 827498 ATTPS5 Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain. O.I. C.G. H.G.
187.0 100.0 112.7 At4g23060 828405 IQD22 (IQ-domain 22) F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMF O.I. C.G. H.G.
184.3 100.0 46.6 At3g43320 823411 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
184.1 100.0 230.1 At1g79050 844246 DNA repair protein recA F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:chloroplast;BOAMPFV O.I. C.G. H.G.
182.4 100.0 36.4 At2g32940 817856 AGO6 (ARGONAUTE 6) Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing. O.I. C.G. H.G.
182.2 100.0 100.7 At2g07695 815371 cytochrome c oxidase subunit II, putative F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP O.I. C.G. H.G.
181.5 100.0 34.0 At1g78740 844210 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
180.5 100.0 136.2 At5g48310 834884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3181.4	100.0	369.5	At3g59790	825148	ATMPK10	member of MAP Kinase	O.I.	C.G.	H.G.
2852.5	100.0	329.1	At5g07700	830663	MYB76 (myb domain protein 76)	Encodes a putative transcription factor (MYB76).	O.I.	C.G.	H.G.
2692.5	100.0	442.5	At2g12050	3768039	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2426.3	100.0	1043.6	At3g18940	821426	clast3-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOA	O.I.	C.G.	H.G.
1965.1	100.0	209.3	At1g67210	843041	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPOFV	O.I.	C.G.	H.G.
1847.8	100.0	460.1	At3g17365	821000	catalytic/ methyltransferase	F:methyltransferase activity, catalytic activity;P:metabolic process;C:cellular_component unknown;OMBPFA	O.I.	C.G.	H.G.
1776.0	100.0	422.9	At5g58480	835961	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
1690.8	100.0	702.1	At5g40300	834028	integral membrane protein, putative	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane, membrane;POM	O.I.	C.G.	H.G.
1534.1	100.0	138.8	At1g33220	840216	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
1455.3	100.0	563.4	At4g36970	829851	remorin family protein	F:DNA binding;P:unknown;C:plasma membrane, chloroplast;POMFB	O.I.	C.G.	H.G.
1435.7	100.0	115.0	At3g56530	824820	anac064 (Arabidopsis NAC domain containing protein 64)	F:transcription factor activity;P:regulation of transcription;C:unknown;P	O.I.	C.G.	H.G.
1301.3	100.0	122.6	At5g20370	832159	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1297.8	100.0	455.5	At5g51620	835236	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1128.4	100.0	1414.5	At5g16970	831560	AT-AER (alkenal reductase)	encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls	O.I.	C.G.	H.G.
968.0	100.0	428.1	At1g16670	838236	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
952.1	100.0	641.4	At5g40190	834017	calmodulin-binding protein	Identified in a screen for calmodulin-binding proteins obtained from an auxin treated cDNA library.	O.I.	C.G.	H.G.
853.0	100.0	93.6	At3g16730	820925	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;MOPF	O.I.	C.G.	H.G.
811.5	100.0	162.1	At5g11510	831023	MYB3R-4 (myb domain protein 3R-4)	Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4	O.I.	C.G.	H.G.
789.5	100.0	225.3	At1g58250	842193	SAB (SABRE)	SABRE, putative gene of unknown function, homologous to maize apt1 gene. Required for normal cell expansion in the root cortex. The sabre mutation results in abnormal cell expansion. Encodes a rare message; very low level of expression was detected in roots and shoots.	O.I.	C.G.	H.G.
692.3	100.0	60.4	At4g11440	826748	binding	F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO	O.I.	C.G.	H.G.
684.8	100.0	466.4	At1g52730	841706	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;MFBOPA	O.I.	C.G.	H.G.
660.5	100.0	247.6	At3g03900	821077	adenylylsulfate kinase, putative	F:transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding;P:sulfate assimilation;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
655.1	100.0	82.4	At5g66300	836762	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
639.7	100.0	258.7	At3g13445	820546	TBP1 (TATA BINDING PROTEIN 1)	TBP (TATA binding protein) associates with TAF(II)s (TBP-associated factors) to form the TFIID general transcription factor complex	O.I.	C.G.	H.G.
637.8	100.0	856.9	At1g79690	844308	atnudt3 (Arabidopsis thaliana Nudix hydrolase homolog 3)	F:hydrolase activity;P:unknown;C:cytosol, vacuole;BOPFMA	O.I.	C.G.	H.G.
588.2	100.0	237.3	At3g20550	821601	DDL (DAWDLE)	Encodes a nuclear localized FHA (forhkead) domain containing protein.Mutant plants have shortened roots, delayed flowering time, altered floral organ number, defective floral organs and reduced fertility.Ddl mutants also show reduced levels of pri-miRNAs as well as mature miRNAs suggesting involvement in biogenesis of miRNAs. DDL does not affect transcription of miRNAs directly but may act through other proteins such as DCL.	O.I.	C.G.	H.G.
555.1	100.0	89.7	At3g28330	822461	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
553.3	100.0	232.1	At1g18490	838430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
541.3	100.0	728.4	At3g63000	825475	NPL41 (NPL4-LIKE PROTEIN 1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
537.1	100.0	148.0	At3g12520	820431	SULTR4	Encodes a sulfate transporter that in induced under sulfate limitation.	O.I.	C.G.	H.G.
529.3	100.0	241.9	At2g41710	818770	ovule development protein, putative	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
513.0	100.0	35.8	At5g19810	832101	proline-rich extensin-like family protein	F:unknown;P:unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
490.8	100.0	164.3	At3g06660	819851	PAPA-1-like family protein / zinc finger (HIT type) family protein	F:protein binding;P:unknown;C:chloroplast;OMFBP	O.I.	C.G.	H.G.
490.3	100.0	132.2	At4g10890	826688	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFM	O.I.	C.G.	H.G.
461.9	100.0	65.9	At5g26080	832677	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
456.1	100.0	202.1	At3g19090	821444	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MPOFB	O.I.	C.G.	H.G.
450.9	100.0	80.1	At1g48880	841310	unknown protein	F:unknown;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
447.8	100.0	124.2	At1g53260	841759	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFOBVA	O.I.	C.G.	H.G.
429.7	100.0	185.1	At3g27700	822392	RNA recognition motif (RRM)-containing protein	F:RNA binding, nucleotide binding, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
424.1	100.0	277.4	At5g62640	836385	proline-rich family protein	nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC	O.I.	C.G.	H.G.
423.3	100.0	38.3	At4g27930	828906	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
374.8	100.0	80.0	At5g27910	832857	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
369.4	100.0	345.0	At1g48160	841235	signal recognition particle 19 kDa protein, putative / SRP19, putative	F:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOP	O.I.	C.G.	H.G.
357.3	100.0	96.4	At5g59360	836055	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
356.4	100.0	141.9	At1g26240	839165	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
351.8	100.0	51.5	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
345.3	100.0	50.3	At1g30780	839959	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOBVFA	O.I.	C.G.	H.G.
343.5	100.0	248.1	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
341.5	100.0	300.6	At4g08410	826400	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	C.G.	H.G.
336.5	100.0	219.9	At3g28550	822485	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPFBOVA	O.I.	C.G.	H.G.
333.6	100.0	26.1	At5g43000	834315	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MP	O.I.	C.G.	H.G.
331.9	100.0	66.9	At3g45750	823717	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPB	O.I.	C.G.	H.G.
324.2	100.0	1410.6	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
317.7	100.0	127.1	At5g41000	834102	YSL4 (YELLOW STRIPE LIKE 4)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.
293.3	100.0	408.1	At5g38195	833801	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
293.1	100.0	422.5	At1g71980	843529	protease-associated zinc finger (C3HC4-type RING finger) family protein	F:peptidase activity, protein binding, zinc ion binding;P:unknown;C:endomembrane system;OMPFBV	O.I.	C.G.	H.G.
285.7	100.0	64.0	At4g27850	828898	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
284.9	100.0	159.3	At3g49710	824133	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
284.8	100.0	63.1	At4g32970	829434	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
283.4	100.0	28.2	At5g07930	830687	MCT2 (mei2 C-Terminal RRM only like 2)	a member of mei2-like gene family; phylogenetic analysis revealed that it belongs to the fourth clade of mei2-like proteins, with conserved C-terminal RNA recognition motif (RRM) only.	O.I.	C.G.	H.G.
268.6	100.0	63.0	At1g68330	843162	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOF	O.I.	C.G.	H.G.
259.1	100.0	188.2	At3g47590	823913	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cellular_component unknown;BOPFAMV	O.I.	C.G.	H.G.
253.4	100.0	53.4	At1g70950	843433	-	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPBFV	O.I.	C.G.	H.G.
251.0	100.0	37.8	At1g62900	842591	O-methyltransferase, putative	F:O-methyltransferase activity;P:unknown;C:cytosol;PBFOM	O.I.	C.G.	H.G.
247.0	100.0	397.5	At5g04490	830328	VTE5 (vitamin E pathway gene5)	Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.	O.I.	C.G.	H.G.
246.8	100.0	111.4	At5g38240	833806	serine/threonine protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
244.6	100.0	52.4	At3g10580	820225	myb family transcription factor	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;POMF	O.I.	C.G.	H.G.
244.0	100.0	15.1	At2g22710	816801	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
243.5	100.0	26.0	At3g23350	821916	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
239.5	100.0	29.0	At5g32630	3771080	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
238.7	100.0	26.6	At3g63320	825507	protein phosphatase 2C-related / PP2C-related	F:protein serine/threonine phosphatase activity, catalytic activity;P:unknown;C:unknown;MPOFVB	O.I.	C.G.	H.G.
236.8	100.0	489.2	At3g02190	820350	60S ribosomal protein L39 (RPL39B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
235.4	100.0	53.4	At1g61510	3767597	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
235.0	100.0	109.9	At5g55060	835597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
223.3	100.0	16.8	At5g56070	835705	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
220.1	100.0	131.9	At3g16260	820872	TRZ4 (TRNASE Z 4)	Encodes a tRNase Z.	O.I.	C.G.	H.G.
220.0	100.0	12.1	At2g03320	814861	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
218.2	100.0	26.9	At5g41170	834119	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
213.4	100.0	226.4	At1g80790	844418	XH/XS domain-containing protein / XS zinc finger domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
212.8	100.0	90.3	At1g75340	843870	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;OMFBPVA	O.I.	C.G.	H.G.
211.7	100.0	109.8	At5g58980	836015	ceramidase family protein	F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP	O.I.	C.G.	H.G.
211.5	100.0	32.3	At1g49900	841413	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;MOPFBVA	O.I.	C.G.	H.G.
211.3	100.0	105.9	At2g36480	818222	zinc finger (C2H2-type) family protein	F:zinc ion binding;P:biological_process unknown;C:intracellular;OMFBP	O.I.	C.G.	H.G.
206.6	100.0	38.7	At5g39370	833933	S-locus glycoprotein, putative	F:sugar binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
205.4	100.0	64.9	At1g77720	844108	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;MOPFBVA	O.I.	C.G.	H.G.
202.4	100.0	34.3	At5g03600	831781	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBOFM	O.I.	C.G.	H.G.
200.2	100.0	63.4	At2g04660	815008	APC2	a highly conserved ubiquitin-protein ligase involved in cell cycle regulation	O.I.	C.G.	H.G.
198.7	100.0	118.8	At1g76510	843984	ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOB	O.I.	C.G.	H.G.
197.5	100.0	55.7	At3g02980	821166	GCN5-related N-acetyltransferase (GNAT) family protein	F:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;MOPFAB	O.I.	C.G.	H.G.
195.6	100.0	111.3	At1g70560	843393	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)	TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.	O.I.	C.G.	H.G.
194.4	100.0	78.4	At5g18440	831962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
192.1	100.0	75.0	At3g03360	821272	F-box family protein	F:unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
188.5	100.0	263.4	At4g17770	827498	ATTPS5	Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.	O.I.	C.G.	H.G.
187.0	100.0	112.7	At4g23060	828405	IQD22 (IQ-domain 22)	F:calmodulin binding;P:response to gibberellin stimulus;C:unknown;POMF	O.I.	C.G.	H.G.
184.3	100.0	46.6	At3g43320	823411	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
184.1	100.0	230.1	At1g79050	844246	DNA repair protein recA	F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:chloroplast;BOAMPFV	O.I.	C.G.	H.G.
182.4	100.0	36.4	At2g32940	817856	AGO6 (ARGONAUTE 6)	Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.	O.I.	C.G.	H.G.
182.2	100.0	100.7	At2g07695	815371	cytochrome c oxidase subunit II, putative	F:electron carrier activity, cytochrome-c oxidase activity, copper ion binding, heme binding;P:electron transport chain, respiratory electron transport chain;C:integral to membrane, membrane;MOFBP	O.I.	C.G.	H.G.
181.5	100.0	34.0	At1g78740	844210	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
180.5	100.0	136.2	At5g48310	834884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.

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GSM ID	GSM133773
Assay name	Lindsey_1-25_torpedo-meristem_Rep1_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133773 Assay name Lindsey_1-25_torpedo-meristem_Rep1_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133773

Assay name Lindsey_1-25_torpedo-meristem_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues