CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133772

Assay name Lindsey_1-24_torpedo-apical_Rep6_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1053.2 100.0 601.0 At1g63100 842613 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMB O.I. C.G. H.G.
299.0 100.0 278.6 At1g72340 843566 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. C.G. H.G.
213.8 100.0 47.6 At2g37880 818364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
205.5 100.0 204.3 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
180.6 100.0 98.7 At1g71180 843458 6-phosphogluconate dehydrogenase NAD-binding domain-containing protein F:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA O.I. C.G. H.G.
175.4 100.0 359.6 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
167.7 100.0 70.0 At1g74420 843783 FUT3 (FUCOSYLTRANSFERASE 3) Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1. O.I. C.G. H.G.
159.0 99.9 109.5 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
151.9 99.9 124.5 At1g20030 838592 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV O.I. C.G. H.G.
137.5 99.9 260.8 At3g07030 3768790 nucleic acid binding F:nucleic acid binding;P:unknown;C:unknown O.I. C.G. H.G.
134.2 99.9 216.8 At1g21570 838758 zinc finger (CCCH-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO O.I. C.G. H.G.
119.6 99.9 74.4 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
115.1 99.9 165.4 At5g18590 831977 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV O.I. C.G. H.G.
112.5 99.9 62.8 At1g60970 842388 clathrin adaptor complex small chain family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO O.I. C.G. H.G.
107.9 99.9 24.7 At5g63690 836489 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOA O.I. C.G. H.G.
95.2 99.9 187.2 At3g02900 821188 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB O.I. C.G. H.G.
94.8 99.9 54.0 At5g47360 834783 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA O.I. C.G. H.G.
94.5 99.9 292.7 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
87.2 99.9 116.9 At2g39220 818507 PLP6 (PATATIN-LIKE PROTEIN 6) F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF O.I. C.G. H.G.
86.6 99.9 257.3 At5g46160 834658 ribosomal protein L14 family protein / huellenlos paralog (HLP) F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAF O.I. C.G. H.G.
86.3 99.9 60.2 At1g72190 843551 oxidoreductase family protein F:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPV O.I. C.G. H.G.
80.8 99.9 37.6 At1g15480 838118 DNA binding F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB O.I. C.G. H.G.
79.5 99.9 380.6 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. O.I. C.G. H.G.
71.4 99.9 66.1 At2g38370 818418 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
69.7 99.9 204.3 At4g38490 830005 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
68.5 99.9 159.2 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
67.9 99.9 23.8 At5g52220 835298 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
64.4 99.8 49.9 At5g27460 832805 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFB O.I. C.G. H.G.
60.9 99.8 50.0 At2g43260 818928 F-box family protein / S locus-related F:unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
59.8 99.8 89.2 At3g09970 820158 calcineurin-like phosphoesterase family protein F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAF O.I. C.G. H.G.
58.4 99.8 43.8 At3g55660 824732 ROPGEF6 Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. O.I. C.G. H.G.
57.8 99.8 37.4 At5g61930 836314 APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3) ACCUMULATION OF PHOTOSYSTEM ONE 3 O.I. C.G. H.G.
55.8 99.8 63.5 At3g02000 820200 ROXY1 Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN). O.I. C.G. H.G.
55.6 99.8 34.7 At5g22810 832344 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
55.1 99.8 232.7 At3g04550 819611 unknown protein F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO O.I. C.G. H.G.
54.3 99.8 44.4 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
53.5 99.8 225.7 At4g12060 826814 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. C.G. H.G.
51.7 99.8 133.2 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
51.1 99.8 69.1 At4g33760 829518 tRNA synthetase class II (D, K and N) family protein F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane, cytoplasm;BOMFAP O.I. C.G. H.G.
50.9 99.8 29.2 At1g04150 839249 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
48.4 99.8 555.9 At3g53730 824540 histone H4 F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV O.I. C.G. H.G.
48.4 99.8 114.3 At1g13690 837930 ATE1 AtE1 - stimulates the ATPase activity of DnaK/DnaJ O.I. C.G. H.G.
47.4 99.8 22.2 At3g42670 823287 CHR38 (CHROMATIN REMODELING 38) Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced. O.I. C.G. H.G.
47.1 99.8 19.5 At2g39120 818498 ubiquitin thiolesterase F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;P O.I. C.G. H.G.
46.9 99.8 39.6 At4g29240 829045 leucine-rich repeat family protein / extensin family protein F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
46.2 99.8 139.0 At3g13070 820495 CBS domain-containing protein / transporter associated domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA O.I. C.G. H.G.
46.0 99.8 21.8 At1g61500 842444 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
44.4 99.8 337.2 At3g12050 820379 Aha1 domain-containing protein F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB O.I. C.G. H.G.
43.3 99.8 61.0 At3g16620 820913 ATTOC120 component of TOC complex, plastid protein import machinery. O.I. C.G. H.G.
42.8 99.8 22.6 At3g60930 825264 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.3 99.8 44.3 At1g61065 842398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
41.7 99.8 40.4 At5g50110 835075 - F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPM O.I. C.G. H.G.
41.3 99.8 374.3 At5g13000 831140 ATGSL12 (glucan synthase-like 12) encodes a gene similar to callose synthase O.I. C.G. H.G.
40.9 99.8 172.9 At5g55280 835621 FTSZ1-1 Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division. O.I. C.G. H.G.
40.5 99.8 228.1 At2g28020 817346 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
40.3 99.8 34.9 At1g61920 842487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.6 99.8 121.6 At1g73620 843696 thaumatin-like protein, putative / pathogenesis-related protein, putative F:unknown;P:response to other organism;C:membrane;PMFBO O.I. C.G. H.G.
39.4 99.8 157.4 At1g04660 839454 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA O.I. C.G. H.G.
39.3 99.8 867.3 At3g16080 820853 60S ribosomal protein L37 (RPL37C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
39.0 99.8 26.2 At1g20230 838612 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
38.3 99.8 99.8 At3g54750 824640 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
38.2 99.8 176.5 At3g53580 824526 diaminopimelate epimerase family protein F:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPM O.I. C.G. H.G.
38.1 99.8 67.3 At5g54630 835552 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO O.I. C.G. H.G.
37.2 99.7 218.7 At2g37120 818288 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P O.I. C.G. H.G.
36.8 99.7 71.7 At1g77550 844091 protein binding / tubulin-tyrosine ligase F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB O.I. C.G. H.G.
36.3 99.7 274.7 At2g21580 816696 40S ribosomal protein S25 (RPS25B) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MFPOA O.I. C.G. H.G.
36.1 99.7 98.1 At3g06310 819805 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO O.I. C.G. H.G.
36.0 99.7 10.3 At3g58590 825028 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
35.8 99.7 66.6 At5g17620 831628 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
35.8 99.7 17.1 At3g09080 820061 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA O.I. C.G. H.G.
35.3 99.7 18.9 At3g22900 821862 NRPD7 Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7 O.I. C.G. H.G.
35.1 99.7 60.0 At5g48310 834884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
34.9 99.7 29.1 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
34.7 99.7 55.8 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.7 99.7 63.4 At3g60830 825254 ATARP7 (ACTIN-RELATED PROTEIN 7) Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission. O.I. C.G. H.G.
33.4 99.7 15.3 At1g15530 838123 receptor lectin kinase, putative F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA O.I. C.G. H.G.
33.3 99.7 139.7 At3g55200 824686 splicing factor, putative F:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPB O.I. C.G. H.G.
33.2 99.7 64.1 At1g63470 842653 DNA-binding family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO O.I. C.G. H.G.
32.9 99.7 38.4 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
32.5 99.7 195.6 At5g51210 835196 OLEO3 (OLEOSIN3) Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation. O.I. C.G. H.G.
32.4 99.7 21.5 At5g24330 832503 ATXR6 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. O.I. C.G. H.G.
31.7 99.7 32.6 At3g57180 824885 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
31.6 99.7 22.0 At4g29140 829035 MATE efflux protein-related F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
31.5 99.7 172.1 At4g13780 827012 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV O.I. C.G. H.G.
31.2 99.7 48.0 At4g16265 827321 NRPB9B One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980 O.I. C.G. H.G.
30.7 99.7 95.9 At3g21090 821661 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
30.6 99.7 221.9 At3g61860 825359 RSP31 encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. O.I. C.G. H.G.
30.6 99.7 77.1 At1g53460 841781 unknown protein F:unknown;P:unknown;C:unknown;OMPFBAV O.I. C.G. H.G.
30.5 99.7 35.5 At3g58530 825022 F-box family protein-related F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
30.3 99.7 118.0 At2g40430 818636 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB O.I. C.G. H.G.
29.8 99.7 37.2 At5g43310 834349 COP1-interacting protein-related F:unknown;P:unknown;C:plasma membrane, membrane;MOFPBV O.I. C.G. H.G.
29.6 99.7 77.2 At2g19270 816444 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB O.I. C.G. H.G.
29.6 99.7 26.7 At3g18930 821425 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
29.5 99.7 35.5 At1g68780 843209 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV O.I. C.G. H.G.
29.1 99.7 63.5 At3g55170 824683 60S ribosomal protein L35 (RPL35C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP O.I. C.G. H.G.
28.7 99.7 14.4 At5g19020 832021 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMF O.I. C.G. H.G.
28.3 99.7 33.7 At2g22650 816796 FAD-dependent oxidoreductase family protein F:oxidoreductase activity;P:unknown;C:unknown;BOPFA O.I. C.G. H.G.
28.2 99.7 53.6 At1g12330 837787 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;PFOM O.I. C.G. H.G.
27.8 99.7 109.9 At2g35500 818115 shikimate kinase-related F:unknown;P:aromatic amino acid family biosynthetic process;C:chloroplast;BOP O.I. C.G. H.G.
27.8 99.7 15.0 At3g48910 - - O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1053.2	100.0	601.0	At1g63100	842613	scarecrow transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POMB	O.I.	C.G.	H.G.
299.0	100.0	278.6	At1g72340	843566	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	C.G.	H.G.
213.8	100.0	47.6	At2g37880	818364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
205.5	100.0	204.3	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
180.6	100.0	98.7	At1g71180	843458	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	F:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPA	O.I.	C.G.	H.G.
175.4	100.0	359.6	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
167.7	100.0	70.0	At1g74420	843783	FUT3 (FUCOSYLTRANSFERASE 3)	Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	O.I.	C.G.	H.G.
159.0	99.9	109.5	At5g08460	830745	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
151.9	99.9	124.5	At1g20030	838592	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOV	O.I.	C.G.	H.G.
137.5	99.9	260.8	At3g07030	3768790	nucleic acid binding	F:nucleic acid binding;P:unknown;C:unknown	O.I.	C.G.	H.G.
134.2	99.9	216.8	At1g21570	838758	zinc finger (CCCH-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPO	O.I.	C.G.	H.G.
119.6	99.9	74.4	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
115.1	99.9	165.4	At5g18590	831977	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV	O.I.	C.G.	H.G.
112.5	99.9	62.8	At1g60970	842388	clathrin adaptor complex small chain family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO	O.I.	C.G.	H.G.
107.9	99.9	24.7	At5g63690	836489	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOA	O.I.	C.G.	H.G.
95.2	99.9	187.2	At3g02900	821188	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PB	O.I.	C.G.	H.G.
94.8	99.9	54.0	At5g47360	834783	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
94.5	99.9	292.7	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
87.2	99.9	116.9	At2g39220	818507	PLP6 (PATATIN-LIKE PROTEIN 6)	F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMF	O.I.	C.G.	H.G.
86.6	99.9	257.3	At5g46160	834658	ribosomal protein L14 family protein / huellenlos paralog (HLP)	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAF	O.I.	C.G.	H.G.
86.3	99.9	60.2	At1g72190	843551	oxidoreductase family protein	F:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPV	O.I.	C.G.	H.G.
80.8	99.9	37.6	At1g15480	838118	DNA binding	F:DNA binding;P:biological_process unknown;C:unknown;PMOFAB	O.I.	C.G.	H.G.
79.5	99.9	380.6	At4g28190	828934	ULT1 (ULTRAPETALA1)	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.	O.I.	C.G.	H.G.
71.4	99.9	66.1	At2g38370	818418	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
69.7	99.9	204.3	At4g38490	830005	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
68.5	99.9	159.2	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
67.9	99.9	23.8	At5g52220	835298	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
64.4	99.8	49.9	At5g27460	832805	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFB	O.I.	C.G.	H.G.
60.9	99.8	50.0	At2g43260	818928	F-box family protein / S locus-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
59.8	99.8	89.2	At3g09970	820158	calcineurin-like phosphoesterase family protein	F:hydrolase activity, protein serine/threonine phosphatase activity;P:biological_process unknown;C:cellular_component unknown;BOPMVAF	O.I.	C.G.	H.G.
58.4	99.8	43.8	At3g55660	824732	ROPGEF6	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	O.I.	C.G.	H.G.
57.8	99.8	37.4	At5g61930	836314	APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)	ACCUMULATION OF PHOTOSYSTEM ONE 3	O.I.	C.G.	H.G.
55.8	99.8	63.5	At3g02000	820200	ROXY1	Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).	O.I.	C.G.	H.G.
55.6	99.8	34.7	At5g22810	832344	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
55.1	99.8	232.7	At3g04550	819611	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMO	O.I.	C.G.	H.G.
54.3	99.8	44.4	At5g01370	831905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
53.5	99.8	225.7	At4g12060	826814	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	C.G.	H.G.
51.7	99.8	133.2	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
51.1	99.8	69.1	At4g33760	829518	tRNA synthetase class II (D, K and N) family protein	F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane, cytoplasm;BOMFAP	O.I.	C.G.	H.G.
50.9	99.8	29.2	At1g04150	839249	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
48.4	99.8	555.9	At3g53730	824540	histone H4	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFV	O.I.	C.G.	H.G.
48.4	99.8	114.3	At1g13690	837930	ATE1	AtE1 - stimulates the ATPase activity of DnaK/DnaJ	O.I.	C.G.	H.G.
47.4	99.8	22.2	At3g42670	823287	CHR38 (CHROMATIN REMODELING 38)	Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.	O.I.	C.G.	H.G.
47.1	99.8	19.5	At2g39120	818498	ubiquitin thiolesterase	F:ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:mitochondrion, intracellular;P	O.I.	C.G.	H.G.
46.9	99.8	39.6	At4g29240	829045	leucine-rich repeat family protein / extensin family protein	F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
46.2	99.8	139.0	At3g13070	820495	CBS domain-containing protein / transporter associated domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMPFA	O.I.	C.G.	H.G.
46.0	99.8	21.8	At1g61500	842444	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
44.4	99.8	337.2	At3g12050	820379	Aha1 domain-containing protein	F:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPB	O.I.	C.G.	H.G.
43.3	99.8	61.0	At3g16620	820913	ATTOC120	component of TOC complex, plastid protein import machinery.	O.I.	C.G.	H.G.
42.8	99.8	22.6	At3g60930	825264	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.3	99.8	44.3	At1g61065	842398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
41.7	99.8	40.4	At5g50110	835075	-	F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
41.3	99.8	374.3	At5g13000	831140	ATGSL12 (glucan synthase-like 12)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
40.9	99.8	172.9	At5g55280	835621	FTSZ1-1	Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.	O.I.	C.G.	H.G.
40.5	99.8	228.1	At2g28020	817346	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
40.3	99.8	34.9	At1g61920	842487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.6	99.8	121.6	At1g73620	843696	thaumatin-like protein, putative / pathogenesis-related protein, putative	F:unknown;P:response to other organism;C:membrane;PMFBO	O.I.	C.G.	H.G.
39.4	99.8	157.4	At1g04660	839454	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA	O.I.	C.G.	H.G.
39.3	99.8	867.3	At3g16080	820853	60S ribosomal protein L37 (RPL37C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
39.0	99.8	26.2	At1g20230	838612	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
38.3	99.8	99.8	At3g54750	824640	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
38.2	99.8	176.5	At3g53580	824526	diaminopimelate epimerase family protein	F:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPM	O.I.	C.G.	H.G.
38.1	99.8	67.3	At5g54630	835552	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PFMO	O.I.	C.G.	H.G.
37.2	99.7	218.7	At2g37120	818288	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P	O.I.	C.G.	H.G.
36.8	99.7	71.7	At1g77550	844091	protein binding / tubulin-tyrosine ligase	F:protein binding, tubulin-tyrosine ligase activity;P:protein modification process;C:chloroplast;MOPFB	O.I.	C.G.	H.G.
36.3	99.7	274.7	At2g21580	816696	40S ribosomal protein S25 (RPS25B)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, plasma membrane;MFPOA	O.I.	C.G.	H.G.
36.1	99.7	98.1	At3g06310	819805	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
36.0	99.7	10.3	At3g58590	825028	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
35.8	99.7	66.6	At5g17620	831628	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
35.8	99.7	17.1	At3g09080	820061	transducin family protein / WD-40 repeat family protein	F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex;MBFOPA	O.I.	C.G.	H.G.
35.3	99.7	18.9	At3g22900	821862	NRPD7	Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7	O.I.	C.G.	H.G.
35.1	99.7	60.0	At5g48310	834884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
34.9	99.7	29.1	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
34.7	99.7	55.8	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.7	99.7	63.4	At3g60830	825254	ATARP7 (ACTIN-RELATED PROTEIN 7)	Encodes an actin-related protein required for normal embryogenesis, plant architecture and floral organ abscission.	O.I.	C.G.	H.G.
33.4	99.7	15.3	At1g15530	838123	receptor lectin kinase, putative	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane, vacuole;MPOBFVA	O.I.	C.G.	H.G.
33.3	99.7	139.7	At3g55200	824686	splicing factor, putative	F:nucleic acid binding;P:biological_process unknown;C:nucleus, chloroplast;MFOPB	O.I.	C.G.	H.G.
33.2	99.7	64.1	At1g63470	842653	DNA-binding family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBO	O.I.	C.G.	H.G.
32.9	99.7	38.4	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
32.5	99.7	195.6	At5g51210	835196	OLEO3 (OLEOSIN3)	Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.	O.I.	C.G.	H.G.
32.4	99.7	21.5	At5g24330	832503	ATXR6	Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.	O.I.	C.G.	H.G.
31.7	99.7	32.6	At3g57180	824885	GTP binding	F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
31.6	99.7	22.0	At4g29140	829035	MATE efflux protein-related	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
31.5	99.7	172.1	At4g13780	827012	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV	O.I.	C.G.	H.G.
31.2	99.7	48.0	At4g16265	827321	NRPB9B	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980	O.I.	C.G.	H.G.
30.7	99.7	95.9	At3g21090	821661	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
30.6	99.7	221.9	At3g61860	825359	RSP31	encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined.	O.I.	C.G.	H.G.
30.6	99.7	77.1	At1g53460	841781	unknown protein	F:unknown;P:unknown;C:unknown;OMPFBAV	O.I.	C.G.	H.G.
30.5	99.7	35.5	At3g58530	825022	F-box family protein-related	F:unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
30.3	99.7	118.0	At2g40430	818636	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPB	O.I.	C.G.	H.G.
29.8	99.7	37.2	At5g43310	834349	COP1-interacting protein-related	F:unknown;P:unknown;C:plasma membrane, membrane;MOFPBV	O.I.	C.G.	H.G.
29.6	99.7	77.2	At2g19270	816444	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	O.I.	C.G.	H.G.
29.6	99.7	26.7	At3g18930	821425	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
29.5	99.7	35.5	At1g68780	843209	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV	O.I.	C.G.	H.G.
29.1	99.7	63.5	At3g55170	824683	60S ribosomal protein L35 (RPL35C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFP	O.I.	C.G.	H.G.
28.7	99.7	14.4	At5g19020	832021	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POMF	O.I.	C.G.	H.G.
28.3	99.7	33.7	At2g22650	816796	FAD-dependent oxidoreductase family protein	F:oxidoreductase activity;P:unknown;C:unknown;BOPFA	O.I.	C.G.	H.G.
28.2	99.7	53.6	At1g12330	837787	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;PFOM	O.I.	C.G.	H.G.
27.8	99.7	109.9	At2g35500	818115	shikimate kinase-related	F:unknown;P:aromatic amino acid family biosynthetic process;C:chloroplast;BOP	O.I.	C.G.	H.G.
27.8	99.7	15.0	At3g48910		-	-	O.I.	C.G.	H.G.

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GSM ID	GSM133772
Assay name	Lindsey_1-24_torpedo-apical_Rep6_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133772 Assay name Lindsey_1-24_torpedo-apical_Rep6_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133772

Assay name Lindsey_1-24_torpedo-apical_Rep6_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues