Microarray experiments to specifically-expressed genes

GSM ID GSM133771
Assay name Lindsey_1-23_torpedo-apical_Rep5_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1078.0100.0285.0At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
747.1100.0506.2At1g63100842613scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMBO.I.C.G.H.G.
339.1100.099.6At1g74420843783FUT3 (FUCOSYLTRANSFERASE 3)Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.O.I.C.G.H.G.
332.5100.0341.2At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
268.8100.0264.2At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
262.9100.0105.1At1g72190843551oxidoreductase family proteinF:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPVO.I.C.G.H.G.
254.8100.0227.5At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
231.8100.0458.4At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
219.9100.0274.8At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
173.2100.089.3At2g43190818920ribonuclease P family proteinF:ribonuclease activity, ribonuclease P activity, RNA binding;P:tRNA processing, mRNA cleavage, rRNA processing;C:ribonuclease P complex, nucleolar ribonuclease P complex, ribonuclease MRP complex;MFOPO.I.C.G.H.G.
163.299.9245.1At3g02900821188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.C.G.H.G.
127.999.9131.0At1g44835841048YbaK/prolyl-tRNA synthetase family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
123.299.975.5At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
115.699.925.6At5g63690836489-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOAO.I.C.G.H.G.
111.199.9207.2At1g53520841787chalcone-flavanone isomerase-relatedF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBFO.I.C.G.H.G.
110.199.9106.0At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
106.099.9284.7At5g46160834658ribosomal protein L14 family protein / huellenlos paralog (HLP)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAFO.I.C.G.H.G.
98.499.9269.3At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
97.299.946.5At2g38840818468guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:endomembrane system;MOPFBO.I.C.G.H.G.
92.099.9234.7At4g38490830005unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
90.999.939.4At4g24970828599ATP-binding region, ATPase-like domain-containing proteinF:ATP binding;P:unknown;C:membrane;MOPBFAO.I.C.G.H.G.
89.399.959.2At5g50110835075-F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPMO.I.C.G.H.G.
80.399.944.1At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
78.899.983.0At5g56590835760glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOBO.I.C.G.H.G.
77.599.971.1At1g32290840121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
76.099.9218.4At1g04660839454glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
72.099.9146.9At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
71.999.978.7At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.O.I.C.G.H.G.
69.999.927.2At2g37880818364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
68.099.9235.4At3g53580824526diaminopimelate epimerase family proteinF:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPMO.I.C.G.H.G.
67.499.824.8At4g37170829871pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMBO.I.C.G.H.G.
66.799.866.3At2g34650818030PID (PINOID)Encodes a protein serine/threonine kinase that may act as a positive regulator of cellular auxin efflux, as a a binary switch for PIN polarity, and as a negative regulator of auxin signaling. Recessive mutants exhibit similar phenotypes as pin-formed mutants in flowers and inflorescence but distinct phenotypes in cotyledons and leaves. Expressed in the vascular tissue proximal to root and shoot meristems, shoot apex, and embryos. Expression is induced by auxin. Overexpression of the gene results in phenotypes in the root and shoot similar to those found in auxin-insensitive mutants. The protein physically interacts with TCH3 (TOUCH3) and PID-BINDING PROTEIN 1 (PBP1), a previously uncharacterized protein containing putative EF-hand calcium-binding motifs. Acts together with ENP (ENHANCER OF PINOID) to instruct precursor cells to elaborate cotyledons in the transition stage embryo. Interacts with PDK1. PID autophosphorylation is required for the ability of PID to phosphorylate an exogenous substrate. PID activation loop is required for PDK1-dependent PID phosphorylation and requires the PIF domain. Negative regulator of root hair growth. PID kinase activity is critical for the inhibition of root hair growth and for maintaining the proper subcellular localization of PID.O.I.C.G.H.G.
65.799.8138.1At2g47840819396tic20 protein-relatedF:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;OBPO.I.C.G.H.G.
64.099.824.2At5g26790832737unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
63.399.818.4At1g32740840168protein binding / zinc ion bindingF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVBO.I.C.G.H.G.
63.199.812.1At1g75430843879BLH11 (BEL1-LIKE HOMEODOMAIN 11)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
62.899.869.4At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
61.799.866.7At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).O.I.C.G.H.G.
60.899.842.8At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
59.699.8130.3At5g55130835604CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)putative molybdopterin synthase sulphurylase (cnx5)O.I.C.G.H.G.
55.899.8140.6At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFO.I.C.G.H.G.
54.099.855.6At3g10330820195transcription initiation factor IIB-2 / general transcription factor TFIIB-2 (TFIIB2)F:protein binding, RNA polymerase II transcription factor activity, transcription regulator activity, zinc ion binding, translation initiation factor activity;P:translational initiation, regulation of transcription, DNA-dependent, transcription initiation, regulation of transcription;C:nucleus, cytoplasm;OAMFPVO.I.C.G.H.G.
53.799.869.5At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
53.799.821.5At1g32375840130F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
52.799.8126.2At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
52.399.873.0At1g12330837787unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PFOMO.I.C.G.H.G.
52.199.887.6At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
51.699.817.1At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
51.499.818.0At2g18120816325SRS4 (SHI-RELATED SEQUENCE 4)A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.O.I.C.G.H.G.
51.199.829.0At5g03800831717EMB175 (EMBRYO DEFECTIVE 175)Encodes a protein with a large central domain of 14 internal pentatricopeptide motifs (some degenerate) arranged in tandem. Mutations in this locus result in embryo lethality.O.I.C.G.H.G.
50.999.835.1At3g18930821425zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVO.I.C.G.H.G.
50.799.833.9At1g77110844046PIN6 (PIN-FORMED 6)Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
49.499.8241.3At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
48.499.8446.8At2g20530816575ATPHB6 (PROHIBITIN 6)F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAVO.I.C.G.H.G.
47.399.8549.9At3g53730824540histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
47.399.845.0At1g68780843209leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
46.499.869.1At5g48310834884unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
44.099.8204.7At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
43.799.831.8At1g26660839206c-myc binding protein, putative / prefoldin, putativeF:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPABO.I.C.G.H.G.
43.199.8167.0At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
43.099.832.5At4g23950828495-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBPO.I.C.G.H.G.
42.699.830.4At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
42.299.836.4At1g71230843463CSN5B (COP9-SIGNALOSOME 5B)Encodes a subunit of the COP9 complex, similar to JAB1, a specific mammalian coactivator of AP-1 transcription. Involved in protein deneddylation. Double mutants with CSN5A are constitutively photomorphogenic (de-etiolated) and have abnormal auxin responses.O.I.C.G.H.G.
42.199.895.2At1g55460841993Kin17 DNA-binding protein-relatedF:zinc ion binding;P:biological_process unknown;C:intracellular;MOFPBVAO.I.C.G.H.G.
41.499.8100.1At2g45950819203ASK20 (ARABIDOPSIS SKP1-LIKE 20)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBVO.I.C.G.H.G.
41.099.852.4At3g08950820046electron transport SCO1/SenC family proteinF:copper ion binding;P:copper ion transport, respiratory chain complex IV assembly, cellular copper ion homeostasis, cell redox homeostasis;C:mitochondrion, plastid;BOMFPAO.I.C.G.H.G.
41.099.824.6At2g38060818384PHT4Encodes an inorganic phosphate transporter (PHT4;2).O.I.C.G.H.G.
40.499.856.8At1g21090838705hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:anchored to membrane;PMFOBO.I.C.G.H.G.
40.399.835.2At5g47360834783pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAO.I.C.G.H.G.
39.799.8121.2At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
39.799.853.8At4g26790828786GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
39.499.8365.5At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
38.699.836.6At2g01120814641ORC4 (ORIGIN RECOGNITION COMPLEX SUBUNIT 4)Origin Recognition Complex subunit 4. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts with all ORC subunits except ORC1b.O.I.C.G.H.G.
38.599.8103.2At4g19400827681actin bindingF:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;POO.I.C.G.H.G.
38.499.872.8At1g13740837934AFP2 (ABI FIVE BINDING PROTEIN 2)Encodes a member of a small plant-specific gene family whose members interact with ABI5 and appear to be involved in mediating stress responses. AFP2 mutants affect a number of ABA mediated processes such as germination and response to osmotic and sugar stress. AFP2 nuclear localization is stress dependent.O.I.C.G.H.G.
37.999.864.8At5g64650836586ribosomal protein L17 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;BOFMPO.I.C.G.H.G.
37.599.763.3At1g34640840368unknown proteinF:unknown;P:N-terminal protein myristoylation;C:endomembrane system;PO.I.C.G.H.G.
37.199.727.5At1g63480842654DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:unknown;PMFOBVO.I.C.G.H.G.
37.099.766.9At5g11160830985APT5 (Adenine phosphoribosyltransferase 5)F:adenine phosphoribosyltransferase activity;P:nucleoside metabolic process, adenine salvage, anaerobic respiration, nucleotide metabolic process;C:cellular_component unknown;BOAMFPO.I.C.G.H.G.
36.699.711.5At2g18650816380MEE16 (maternal effect embryo arrest 16)F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:chloroplast;PMOFVO.I.C.G.H.G.
36.499.717.4At5g52220835298-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
36.299.788.7At5g64816836604unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
36.199.7158.6At2g38810818463HTA8 (HISTONE H2A 8)Encodes HTA8, a histone H2A protein.O.I.C.G.H.G.
34.899.7298.4At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
34.099.724.7At3g47460823900ATSMC2member of SMC subfamilyO.I.C.G.H.G.
33.999.767.1At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
33.699.787.5At1g1525083809260S ribosomal protein L37 (RPL37A)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
32.999.744.5At3g02490820563pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
32.999.734.0At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
32.999.733.2At3g57180824885GTP bindingF:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVAO.I.C.G.H.G.
32.699.7351.3At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
31.999.715.2At2g32940817856AGO6 (ARGONAUTE 6)Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.O.I.C.G.H.G.
31.799.7179.1At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
31.499.792.2At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
31.499.756.5At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
31.399.714.9At1g26760839217SDG35 (SET DOMAIN PROTEIN 35)F:binding;P:biological_process unknown;C:unknown;MFOPBAVO.I.C.G.H.G.
31.299.731.2At3g18800821413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
31.299.727.5At5g61930836314APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)ACCUMULATION OF PHOTOSYSTEM ONE 3O.I.C.G.H.G.
31.199.746.5At2g37020818276DNA binding / sequence-specific DNA bindingF:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPAO.I.C.G.H.G.
30.799.785.5At5g18590831977kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAVO.I.C.G.H.G.



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