Microarray experiments to specifically-expressed genes

GSM ID GSM133770
Assay name Lindsey_1-22_torpedo-apical_Rep4_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
579.8100.073.2At5g47440834792phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO.I.C.G.H.G.
493.7100.0411.5At1g63100842613scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMBO.I.C.G.H.G.
478.3100.0189.8At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
383.1100.0122.6At5g50110835075-F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPMO.I.C.G.H.G.
258.1100.0229.0At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
214.5100.072.1At5g61930836314APO3 (ACCUMULATION OF PHOTOSYSTEM ONE 3)ACCUMULATION OF PHOTOSYSTEM ONE 3O.I.C.G.H.G.
191.8100.066.1At2g14800815968unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMO.I.C.G.H.G.
184.5100.0409.0At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
161.099.9235.1At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
129.699.9192.1At5g55130835604CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)putative molybdopterin synthase sulphurylase (cnx5)O.I.C.G.H.G.
129.699.956.3At4g23950828495-F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane;OMFBPO.I.C.G.H.G.
123.899.997.4At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
122.599.9103.5At5g56590835760glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOBO.I.C.G.H.G.
121.499.9121.5At5g02560831891HTA12Encodes HTA12, a histone H2A protein.O.I.C.G.H.G.
117.199.9293.8At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
115.499.973.3At5g04620830339ATBIOF (BIOTIN F)The cDNA encoding 7-keto-8-aminopelargonic acid (KAPA) synthase, the first committed enzyme of the biotin synthesis pathway has been cloned and its molecular function confirmed (functional complementation of an E. coli mutant). The subcellular localization of the enzyme (cytosol) proves that the biotin biosynthesis in plants takes place in different compartments which differs from the biosynthetic route found in microorganisms.O.I.C.G.H.G.
113.899.971.3At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
113.599.990.5At3g02000820200ROXY1Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).O.I.C.G.H.G.
108.399.951.2At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
105.299.949.8At4g27240828832zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFOO.I.C.G.H.G.
102.599.962.2At1g54160841856NF-YA5 (NUCLEAR FACTOR Y, SUBUNIT A5)Encodes a member of the CCAAT-binding transcription factor (CBF-B/NF-YA) family. Expression is upregulated in response to ABA and drought. This regulation appears to be mediated by MIR169A which is downregulated in response to drought. NFYA5 is a target of MIR169A. Loss of function mutations are hypersensitive to drought.O.I.C.G.H.G.
99.599.984.0At1g76510843984ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOBO.I.C.G.H.G.
93.299.965.7At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
90.999.9183.3At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
85.499.922.6At5g51380835212F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFBO.I.C.G.H.G.
80.999.949.3At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
80.399.9176.2At1g53520841787chalcone-flavanone isomerase-relatedF:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBFO.I.C.G.H.G.
79.899.9137.7At5g18590831977kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAVO.I.C.G.H.G.
76.099.9140.4At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
75.699.9212.8At4g38490830005unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
72.999.940.6At1g77110844046PIN6 (PIN-FORMED 6)Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
72.499.947.7At3g14750820703unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MOBPFAVO.I.C.G.H.G.
72.199.9119.4At2g47630819376esterase/lipase/thioesterase family proteinF:catalytic activity;P:unknown;C:plasma membrane;BPOMFVAO.I.C.G.H.G.
71.199.955.1At1g68780843209leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
70.799.9359.0At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
70.599.939.1At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
68.699.9180.0At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
66.399.824.0At4g37380829892pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
65.799.8155.4At3g02900821188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.C.G.H.G.
64.499.827.4At4g32450829380pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:mitochondrion;POFMO.I.C.G.H.G.
64.299.874.3At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.O.I.C.G.H.G.
63.099.8135.1At2g47840819396tic20 protein-relatedF:unknown;P:unknown;C:mitochondrion, chloroplast, plastid, chloroplast envelope;OBPO.I.C.G.H.G.
62.999.8127.8At3g54750824640unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
62.699.8139.2At1g63050842608membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBPO.I.C.G.H.G.
60.399.8243.4At3g04550819611unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMOO.I.C.G.H.G.
59.199.8144.7At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFO.I.C.G.H.G.
58.099.851.0At3g46920823845protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:chloroplast;MPOBFVAO.I.C.G.H.G.
57.599.853.8At5g50770835149AtHSD6 (hydroxysteroid dehydrogenase 6)F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
57.599.846.5At4g11640826769ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.O.I.C.G.H.G.
57.199.848.4At2g43260818928F-box family protein / S locus-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
57.099.884.0At1g63470842653DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMFBOO.I.C.G.H.G.
55.599.883.6At1g17160838287pfkB-type carbohydrate kinase family proteinF:kinase activity, ribokinase activity;P:D-ribose metabolic process, D-ribose catabolic process;C:chloroplast, chloroplast stroma;BOMPAFO.I.C.G.H.G.
55.399.858.2At2g38370818418unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
54.799.819.3At4g32540829389YUC1 (YUCCA 1)Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin BiosynthesisO.I.C.G.H.G.
53.799.863.9At5g10910830958mraW methylase family proteinF:methyltransferase activity;P:unknown;C:unknown;BOMPO.I.C.G.H.G.
53.699.8126.7At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
53.699.873.9At1g12330837787unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;PFOMO.I.C.G.H.G.
52.599.840.0At4g22560828352unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
52.499.846.9At1g72190843551oxidoreductase family proteinF:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPVO.I.C.G.H.G.
51.999.8160.2At3g070303768790nucleic acid bindingF:nucleic acid binding;P:unknown;C:unknownO.I.C.G.H.G.
51.699.841.1At3g55660824732ROPGEF6Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.O.I.C.G.H.G.
51.499.8126.5At5g14050831254transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex;BMOFPAVO.I.C.G.H.G.
51.499.867.1At1g18180838397oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:plasma membrane;OBFMPO.I.C.G.H.G.
50.699.833.0At1g50000841424methyltransferaseF:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPMO.I.C.G.H.G.
50.099.881.9At1g44835841048YbaK/prolyl-tRNA synthetase family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
50.099.829.0At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
49.799.866.9At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
47.499.885.0At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.O.I.C.G.H.G.
47.199.8548.4At3g53730824540histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
46.699.8397.7At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
46.299.8436.5At2g20530816575ATPHB6 (PROHIBITIN 6)F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAVO.I.C.G.H.G.
45.199.860.3At4g10620826654-F:unknown;P:biological_process unknown;C:chloroplast;BMFOPAO.I.C.G.H.G.
45.099.824.5At4g36870829840BLH2 (BEL1-LIKE HOMEODOMAIN 2)Encodes a member of the BEL family of homeodomain proteins. Plants doubly mutant for saw1/saw2 (blh2/blh4) have serrated leaves. BP is expressed in the serrated leaves, therefore saw1/saw2 may act redundantly to repress BP in leaves.O.I.C.G.H.G.
43.799.8123.7At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
42.999.878.2At4g16430827337basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
41.899.8178.7At5g46160834658ribosomal protein L14 family protein / huellenlos paralog (HLP)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAFO.I.C.G.H.G.
41.799.815.4At5g11320831003YUC4 (YUCCA4)Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.O.I.C.G.H.G.
41.499.828.6At5g26230832692unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVO.I.C.G.H.G.
41.199.880.1At5g04900830372short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
41.199.820.6At3g42670823287CHR38 (CHROMATIN REMODELING 38)Encodes a nuclear localized SNF domain containing protein involved in RNA silencing. Mutants were identified in a screen for defects in the spread of RNA silencing. CLSY1 may affect production of dsRNA from the locus to be silenced.O.I.C.G.H.G.
40.799.8159.9At1g04660839454glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAO.I.C.G.H.G.
40.699.8218.7At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
40.699.875.6At5g12080831081MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10)F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAPO.I.C.G.H.G.
39.399.846.0At1g711808434586-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, phosphogluconate dehydrogenase (decarboxylating) activity, binding, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
39.299.822.3At1g67180843038zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing proteinF:protein binding, zinc ion binding;P:unknown;C:intracellular;MOFPVO.I.C.G.H.G.
38.199.8176.1At3g53580824526diaminopimelate epimerase family proteinF:diaminopimelate epimerase activity;P:lysine biosynthetic process via diaminopimelate;C:chloroplast;OBAPMO.I.C.G.H.G.
38.099.8120.3At4g38890830044dihydrouridine synthase family proteinF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPAO.I.C.G.H.G.
37.899.827.7At1g63480842654DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:unknown;PMFOBVO.I.C.G.H.G.
37.799.761.0At5g40490834047RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MBOPFVAO.I.C.G.H.G.
37.599.7133.6At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
37.099.7186.5At4g13780827012methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeF:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPVO.I.C.G.H.G.
37.099.761.3At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
36.899.767.5At5g17620831628-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
36.899.728.6At2g38840818468guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:endomembrane system;MOPFBO.I.C.G.H.G.
36.599.7109.7At3g05600819726epoxide hydrolase, putativeF:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFAO.I.C.G.H.G.
36.299.723.4At4g36580829810AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAVO.I.C.G.H.G.
36.199.741.1At1g04020839329BARD1 (BREAST CANCER ASSOCIATED RING 1)Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein–protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.O.I.C.G.H.G.
35.799.714.2At1g62900842591O-methyltransferase, putativeF:O-methyltransferase activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
35.299.7174.9At3g15530820792methyltransferaseF:methyltransferase activity;P:metabolic process;C:cellular_component unknown;BOFAPMO.I.C.G.H.G.
35.199.752.0At3g42660823286nucleotide bindingF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAVO.I.C.G.H.G.



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