Microarray experiments to specifically-expressed genes

GSM ID GSM133769
Assay name Lindsey_1-21_torpedo-basal_Rep6_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
819.8100.085.1At3g50870824251MNP (MONOPOLE)mutant has Embryo defect; GATA Factor Transcriptional RegulatorO.I.C.G.H.G.
599.5100.0212.5At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
472.6100.0402.6At1g63100842613scarecrow transcription factor family proteinF:transcription factor activity;P:regulation of transcription;C:unknown;POMBO.I.C.G.H.G.
374.9100.0172.9At1g21090838705hydroxyproline-rich glycoprotein family proteinF:unknown;P:unknown;C:anchored to membrane;PMFOBO.I.C.G.H.G.
374.0100.0311.6At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
352.3100.046.8At2g26520817193unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO.I.C.G.H.G.
304.8100.073.3At3g53450824513unknown proteinF:molecular_function unknown;P:lysine biosynthetic process via diaminopimelate;C:cellular_component unknown;BOPFMAO.I.C.G.H.G.
220.3100.095.1At2g43260818928F-box family protein / S locus-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
220.2100.0402.9At4g08350826391GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVAO.I.C.G.H.G.
173.2100.0175.1At1g75710843905zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;OPMFO.I.C.G.H.G.
165.2100.0548.7At4g28190828934ULT1 (ULTRAPETALA1)Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.O.I.C.G.H.G.
162.299.986.7At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
161.999.937.6At2g01770814708VIT1 (vacuolar iron transporter 1)Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.O.I.C.G.H.G.
153.599.971.6At4g29240829045leucine-rich repeat family protein / extensin family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
139.499.9218.8At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
115.699.976.6At2g01630814692glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFOO.I.C.G.H.G.
111.399.9202.4At3g02900821188unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO.I.C.G.H.G.
99.399.9101.2At5g26940832752exonuclease family proteinF:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular, chloroplast;BOMPVAO.I.C.G.H.G.
95.899.940.1At1g04150839249C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBVO.I.C.G.H.G.
95.699.9116.8At4g16430827337basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
95.399.9315.4At4g02290828080AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
94.499.928.5At5g17430831609BBM (BABY BOOM)Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.O.I.C.G.H.G.
93.299.9756.5At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
87.299.951.2At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
85.399.9173.8At1g21880838790LYM1 (LYSM DOMAIN GPI-ANCHORED PROTEIN 1 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOFO.I.C.G.H.G.
83.399.925.8At5g17960831663DC1 domain-containing proteinF:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
79.899.924.1At2g32940817856AGO6 (ARGONAUTE 6)Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.O.I.C.G.H.G.
78.499.9244.9At5g46160834658ribosomal protein L14 family protein / huellenlos paralog (HLP)F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMAFO.I.C.G.H.G.
77.199.982.1At5g56590835760glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOBO.I.C.G.H.G.
76.499.964.7At5g55250835618IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.O.I.C.G.H.G.
69.799.930.7At4g10640826656IQD16 (IQ-domain 16)F:calmodulin binding;P:biological_process unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
69.699.973.1At1g27120839601galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:endomembrane system, membrane;MPOBFO.I.C.G.H.G.
69.399.9298.5At2g37120818288DNA-binding S1FA family proteinF:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;PO.I.C.G.H.G.
66.799.824.5At2g23510816883SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE)F:spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFOO.I.C.G.H.G.
66.699.848.4At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
65.199.852.3At1g72190843551oxidoreductase family proteinF:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPVO.I.C.G.H.G.
63.399.886.0At2g17640816271ATSERAT3Encodes a cytosolic serine O-acetyltransferase involved in sulfur assimilation and cysteine biosynthesis. Expressed in the vascular system. Expression is induced after long-term sulfur starvation.O.I.C.G.H.G.
62.899.8152.4At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
61.199.828.6At3g19300821464protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
60.899.877.9At2g38620818444CDKB1Encodes a member of a plant specific family of cyclin dependent kinases.O.I.C.G.H.G.
60.799.8622.9At3g53730824540histone H4F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MOPFVO.I.C.G.H.G.
60.599.8217.9At1g47540841163trypsin inhibitor, putativeF:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;POO.I.C.G.H.G.
60.399.8210.0At5g55280835621FTSZ1-1Encodes one of two FtsZ proteins, tubulin-like proteins, in Arabidopsis. It is involved in chloroplast division.O.I.C.G.H.G.
60.099.843.0At5g47360834783pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:unknown;POMFBAO.I.C.G.H.G.
59.799.8189.1At4g38490830005unknown proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
59.499.828.3At5g48170834869SLY2 (SLEEPY2)encodes an F-box protein whose protein sequence is similar to SLY1, which belongs to SCF-SLY1 E3 ligase complex. SCF-SLY1 E3 ligase degrades DELLA proteins that are involved in promoting growth. Overexpression of SLY2 can partially compensate sly1-10 mutant phenotype of dwarfism.O.I.C.G.H.G.
59.499.819.7At1g16220838190protein phosphatase 2C family protein / PP2C family proteinF:protein serine/threonine phosphatase activity, catalytic activity;P:N-terminal protein myristoylation;C:plasma membrane;PMOFBVO.I.C.G.H.G.
58.799.871.0At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.O.I.C.G.H.G.
58.299.8142.7At1g21570838758zinc finger (CCCH-type) family proteinF:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:unknown;MFPOO.I.C.G.H.G.
57.199.820.3At2g46990819313IAA20 (INDOLE-3-ACETIC ACID INDUCIBLE 20)Encodes a member of the Aux/IAA family of proteins implicated in auxin signaling. IAA20 lacks the conserved degron (domain II) found in many family members, and IAA20 fusion proteins are stable in Arabidopsis seedlings. IAA20 transcripts are induced by auxin treatment, and overexpression of IAA20 leads to defects in gravitropism, root development, root meristem maintenance, etiolation, and cotyledon vascular development.O.I.C.G.H.G.
55.499.810.1At4g13190826933ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
53.499.8449.5At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
53.399.880.5At5g02560831891HTA12Encodes HTA12, a histone H2A protein.O.I.C.G.H.G.
53.199.868.2At1g18180838397oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:plasma membrane;OBFMPO.I.C.G.H.G.
52.999.873.5At1g20030838592pathogenesis-related thaumatin family proteinF:molecular_function unknown;P:response to other organism;C:anchored to membrane;PMFBOVO.I.C.G.H.G.
52.799.8112.0At5g18590831977kelch repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAVO.I.C.G.H.G.
51.999.862.5At2g38050818383DET2 (DE-ETIOLATED 2)Similar to mammalian steroid-5-alpha-reductase. Involved in the brassinolide biosynthetic pathway.O.I.C.G.H.G.
51.399.8313.7At3g57650824934LPAT2Encodes an endoplasmic reticulum localized protein with lysophosphatidyl acyltransferase activity.O.I.C.G.H.G.
51.199.8458.9At2g20530816575ATPHB6 (PROHIBITIN 6)F:unknown;P:biological_process unknown;C:mitochondrion, plasma membrane, respiratory chain complex I, membrane;BOMFPAVO.I.C.G.H.G.
50.699.882.1At1g67320843052DNA primase, large subunit familyF:DNA primase activity;P:DNA replication, synthesis of RNA primer;C:alpha DNA polymerase:primase complex;MFOPAO.I.C.G.H.G.
50.399.823.1At2g37880818364unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
49.799.889.1At3g04680819626CLPS3 (CLP-SIMILAR PROTEIN 3)Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.O.I.C.G.H.G.
49.099.8407.5At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
48.399.860.0At5g54930835584AT hook motif-containing proteinF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
48.199.858.7At4g17950827520DNA-binding family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;OMFPBVO.I.C.G.H.G.
47.099.8132.6At1g28110839704SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
47.099.838.3At3g18800821413unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
46.399.8112.4At1g44750841039ATPUP11Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
44.999.8178.2At1g70710843408ATGH9B1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B1)endo-1,4-beta-glucanase. Involved in cell elongation.O.I.C.G.H.G.
44.599.831.5At2g38840818468guanylate-binding family proteinF:GTP binding, GTPase activity;P:immune response;C:endomembrane system;MOPFBO.I.C.G.H.G.
42.699.8107.5At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
40.399.815.5At5g51380835212F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFBO.I.C.G.H.G.
39.899.874.2At3g5517082468360S ribosomal protein L35 (RPL35C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MOBAFPO.I.C.G.H.G.
39.399.8109.0At2g41230818722unknown proteinF:unknown;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
38.499.836.6At1g15150838080MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
38.299.8106.9At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
38.099.8134.5At4g31120829240SKB1 (SHK1 BINDING PROTEIN 1)Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.O.I.C.G.H.G.
37.899.8103.8At5g55130835604CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)putative molybdopterin synthase sulphurylase (cnx5)O.I.C.G.H.G.
37.699.762.5At3g03210821222unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
37.599.750.8At5g46680834711pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
37.299.7269.9At1g18250838405ATLP-1encodes a thaumatin-like proteinO.I.C.G.H.G.
37.199.732.1At4g18465827579RNA helicase, putativeF:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPAO.I.C.G.H.G.
36.899.751.8At4g26790828786GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.
36.699.720.2At4g19130827651DNA binding / nucleic acid binding / zinc ion bindingF:DNA binding, zinc ion binding, nucleic acid binding;P:DNA replication;C:nucleus;MPOFAO.I.C.G.H.G.
36.399.79.0At3g21800821734UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 4'-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOFO.I.C.G.H.G.
36.299.737.7At5g50110835075-F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPMO.I.C.G.H.G.
35.999.729.4At1g69440843276AGO7 (ARGONAUTE7)Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.O.I.C.G.H.G.
35.799.7106.6At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
35.699.760.2At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
35.299.756.3At2g41990818799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.199.739.6At4g23750828475CRF2 (CYTOKININ RESPONSE FACTOR 2)encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.O.I.C.G.H.G.
35.099.756.9At2g26180817158IQD6 (IQ-domain 6)F:calmodulin binding;P:unknown;C:cellular_component unknown;PMOFO.I.C.G.H.G.
34.899.720.7At5g44210834444ERF9 (ERF DOMAIN PROTEIN 9)encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-9). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.O.I.C.G.H.G.
34.799.784.0At1g79150844256bindingF:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
34.499.7154.8At2g38810818463HTA8 (HISTONE H2A 8)Encodes HTA8, a histone H2A protein.O.I.C.G.H.G.
34.499.758.7At1g80350844375ERH3 (ECTOPIC ROOT HAIR 3)encodes a p60 katanin protein that is expressed throughout the plant. Required for the specification of cell fates from early in development (in the meristem) through differentiation and for normal postmitotic organization of cortical microtubules into transverse arrays in root epidermis cells. Mutants display cytoskeletal defects.O.I.C.G.H.G.
34.099.767.5At1g44835841048YbaK/prolyl-tRNA synthetase family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
33.599.7177.5At4g13780827012methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeF:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPVO.I.C.G.H.G.
33.499.7382.0At5g66680836801DGL1Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.O.I.C.G.H.G.
32.999.742.8At2g25720817113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.



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