CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133768

Assay name Lindsey_1-20_torpedo-basal_Rep5_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
708.7 100.0 96.1 At2g38720 818454 MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5) F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV O.I. C.G. H.G.
696.7 100.0 78.1 At2g01770 814708 VIT1 (vacuolar iron transporter 1) Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane. O.I. C.G. H.G.
595.7 100.0 197.6 At1g30480 839927 DRT111 recombination and DNA-damage resistance protein (DRT111) O.I. C.G. H.G.
471.2 100.0 186.8 At4g16265 827321 NRPB9B One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980 O.I. C.G. H.G.
446.3 100.0 180.2 At2g12050 3768039 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
426.9 100.0 156.5 At1g67530 843074 armadillo/beta-catenin repeat family protein / U-box domain-containing family protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV O.I. C.G. H.G.
398.9 100.0 209.1 At1g73177 843651 BNS (BONSAI) The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development. O.I. C.G. H.G.
394.5 100.0 283.1 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
390.4 100.0 143.5 At4g19540 827696 INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE) F:unknown;P:unknown;C:mitochondrion;BOAMFP O.I. C.G. H.G.
359.7 100.0 83.1 At1g62930 842594 - F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
345.2 100.0 298.2 At2g37975 818375 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO O.I. C.G. H.G.
329.8 100.0 54.6 At2g23510 816883 SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE) F:spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
304.7 100.0 1367.4 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
292.3 100.0 63.9 At4g32970 829434 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF O.I. C.G. H.G.
276.7 100.0 132.9 At4g35940 829749 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
266.3 100.0 80.1 At1g69440 843276 AGO7 (ARGONAUTE7) Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds. O.I. C.G. H.G.
252.1 100.0 46.9 At2g03830 814909 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
222.2 100.0 249.3 At1g17690 838345 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA O.I. C.G. H.G.
222.0 100.0 24.0 At1g43980 840997 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMF O.I. C.G. H.G.
216.5 100.0 96.4 At3g59790 825148 ATMPK10 member of MAP Kinase O.I. C.G. H.G.
203.9 100.0 150.4 At5g27200 832778 ACP5 (acyl carrier protein 5) encodes an acyl carrier protein O.I. C.G. H.G.
202.9 100.0 86.4 At1g71440 843485 PFI (PFIFFERLING) Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei. O.I. C.G. H.G.
202.5 100.0 116.5 At5g47410 834788 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
201.0 100.0 40.2 At1g16830 838254 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA O.I. C.G. H.G.
191.6 100.0 44.6 At5g66300 836762 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) Encodes a NAC-domain transcription factor. Expressed in the vascular tissue. O.I. C.G. H.G.
191.5 100.0 99.6 At5g03140 831590 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
190.8 100.0 73.6 At2g46410 819249 CPC (CAPRICE) Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF. O.I. C.G. H.G.
184.9 100.0 39.3 At5g52220 835298 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
180.6 100.0 364.8 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
179.7 100.0 179.5 At3g54580 824623 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA O.I. C.G. H.G.
179.2 100.0 21.1 At5g19810 832101 proline-rich extensin-like family protein F:unknown;P:unknown;C:endomembrane system;MBPOFVA O.I. C.G. H.G.
178.1 100.0 112.0 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
175.1 100.0 75.3 At5g11510 831023 MYB3R-4 (myb domain protein 3R-4) Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4 O.I. C.G. H.G.
167.9 100.0 68.3 At4g18465 827579 RNA helicase, putative F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA O.I. C.G. H.G.
166.2 100.0 87.7 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
165.8 100.0 209.9 At2g28290 817375 SYD (SPLAYED) Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity. O.I. C.G. H.G.
165.5 100.0 53.8 At5g07040 830595 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV O.I. C.G. H.G.
161.7 99.9 70.5 At3g16980 820954 NRPB9A One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265 O.I. C.G. H.G.
159.2 99.9 169.9 At5g62640 836385 proline-rich family protein nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC O.I. C.G. H.G.
156.2 99.9 123.0 At3g18110 821336 EMB1270 (embryo defective 1270) F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA O.I. C.G. H.G.
155.0 99.9 73.1 At1g53260 841759 unknown protein F:unknown;P:unknown;C:endomembrane system;MPFOBVA O.I. C.G. H.G.
154.5 99.9 53.7 At2g21470 816686 SAE2 (SUMO-ACTIVATING ENZYME 2) Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein. O.I. C.G. H.G.
154.0 99.9 110.8 At1g21090 838705 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:anchored to membrane;PMFOB O.I. C.G. H.G.
151.1 99.9 105.8 At5g47455 834795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
149.2 99.9 189.5 At1g75510 843887 transcription initiation factor IIF beta subunit (TFIIF-beta) family protein F:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPO O.I. C.G. H.G.
148.6 99.9 513.3 At5g16970 831560 AT-AER (alkenal reductase) encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls O.I. C.G. H.G.
146.8 99.9 217.4 At5g13410 831182 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPMFA O.I. C.G. H.G.
144.1 99.9 326.6 At3g12920 820477 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOV O.I. C.G. H.G.
137.8 99.9 69.1 At3g12170 820394 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
134.6 99.9 23.8 At5g37140 833686 tRNA-splicing endonuclease positive effector-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV O.I. C.G. H.G.
133.3 99.9 50.0 At1g55380 841985 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVA O.I. C.G. H.G.
127.5 99.9 89.8 At3g20430 821588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB O.I. C.G. H.G.
125.8 99.9 28.0 At2g26520 817193 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
123.4 99.9 38.7 At1g61510 3767597 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
120.0 99.9 218.9 At2g45520 819160 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB O.I. C.G. H.G.
119.8 99.9 48.0 At2g36485 818223 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;FMP O.I. C.G. H.G.
119.0 99.9 117.8 At1g19680 838555 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;OPMBF O.I. C.G. H.G.
118.3 99.9 123.1 At1g63640 842668 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV O.I. C.G. H.G.
118.0 99.9 201.3 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
116.5 99.9 39.4 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
113.7 99.9 173.4 At4g08410 826400 proline-rich extensin-like family protein F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA O.I. C.G. H.G.
113.4 99.9 76.7 At5g55700 835664 BAM4 (BETA-AMYLASE 4) In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role. O.I. C.G. H.G.
112.8 99.9 32.5 At5g26080 832677 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA O.I. C.G. H.G.
112.7 99.9 62.9 At1g60970 842388 clathrin adaptor complex small chain family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO O.I. C.G. H.G.
112.3 99.9 28.5 At2g32940 817856 AGO6 (ARGONAUTE 6) Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing. O.I. C.G. H.G.
107.8 99.9 44.4 At3g06520 819830 agenet domain-containing protein F:RNA binding;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
107.8 99.9 33.3 At5g01080 831873 beta-galactosidase F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P O.I. C.G. H.G.
106.4 99.9 63.6 At5g07700 830663 MYB76 (myb domain protein 76) Encodes a putative transcription factor (MYB76). O.I. C.G. H.G.
106.0 99.9 18.7 At5g41170 834119 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
103.4 99.9 323.4 At3g02190 820350 60S ribosomal protein L39 (RPL39B) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP O.I. C.G. H.G.
101.0 99.9 124.1 At2g20585 816581 NFD6 (NUCLEAR FUSION DEFECTIVE 6) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
98.5 99.9 95.6 At3g03900 821077 adenylylsulfate kinase, putative F:transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding;P:sulfate assimilation;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
97.3 99.9 18.7 At4g28810 - - O.I. C.G. H.G.
96.2 99.9 79.4 At3g11520 820325 CYCB1 Encodes a B-type mitotic cyclin. O.I. C.G. H.G.
95.9 99.9 123.1 At4g20140 827760 GSO1 (GASSHO1) Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
92.6 99.9 95.6 At3g15970 820841 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein F:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;MBOFPAV O.I. C.G. H.G.
92.4 99.9 110.7 At1g16610 838230 SR45 SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP. O.I. C.G. H.G.
91.5 99.9 44.9 At1g74990 843837 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV O.I. C.G. H.G.
91.2 99.9 36.4 At3g28330 822461 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
90.5 99.9 36.0 At4g27850 828898 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA O.I. C.G. H.G.
90.0 99.9 113.9 At3g11030 820274 unknown protein F:unknown;P:unknown;C:unknown;MPOBFVA O.I. C.G. H.G.
90.0 99.9 26.4 At1g69610 843297 structural constituent of ribosome F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB O.I. C.G. H.G.
89.0 99.9 32.1 At5g20370 832159 serine-rich protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
85.8 99.9 35.8 At1g69240 843255 MES15 (METHYL ESTERASE 15) Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein. O.I. C.G. H.G.
85.7 99.9 12.2 At5g33380 833316 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
85.5 99.9 156.6 At3g62630 825437 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA O.I. C.G. H.G.
84.9 99.9 107.8 At4g38150 829971 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POFMAB O.I. C.G. H.G.
84.3 99.9 28.3 At1g72860 843617 disease resistance protein (TIR-NBS-LRR class), putative F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA O.I. C.G. H.G.
83.9 99.9 37.7 At2g12190 815688 cytochrome P450, putative F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV O.I. C.G. H.G.
83.5 99.9 53.4 At5g64010 836522 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
83.4 99.9 24.3 At5g55650 835659 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
82.3 99.9 29.8 At2g24840 817021 AGL61 (AGAMOUS-LIKE 61) Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell. O.I. C.G. H.G.
80.8 99.9 152.9 At4g36180 829775 leucine-rich repeat family protein F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
80.1 99.9 12.5 At3g42770 823312 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
78.3 99.9 31.4 At1g33220 840216 beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO O.I. C.G. H.G.
77.7 99.9 50.9 At4g29240 829045 leucine-rich repeat family protein / extensin family protein F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
77.0 99.9 39.2 At4g29650 829086 cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO O.I. C.G. H.G.
76.0 99.9 312.7 At2g37120 818288 DNA-binding S1FA family protein F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P O.I. C.G. H.G.
76.0 99.9 41.2 At5g42060 834211 unknown protein F:unknown;P:unknown;C:cellular_component unknown;P O.I. C.G. H.G.
76.0 99.9 29.4 At2g06820 815244 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
708.7	100.0	96.1	At2g38720	818454	MAP65-5 (MICROTUBULE-ASSOCIATED PROTEIN 65-5)	F:microtubule binding;P:microtubule polymerization, anaphase;C:cortical microtubule, microtubule, preprophase band, spindle, phragmoplast;MOBFPAV	O.I.	C.G.	H.G.
696.7	100.0	78.1	At2g01770	814708	VIT1 (vacuolar iron transporter 1)	Encodes an iron transporter required for iron sequestration into vacuoles. Expressed in developing embryo and seed. Localized in the vacuolar membrane.	O.I.	C.G.	H.G.
595.7	100.0	197.6	At1g30480	839927	DRT111	recombination and DNA-damage resistance protein (DRT111)	O.I.	C.G.	H.G.
471.2	100.0	186.8	At4g16265	827321	NRPB9B	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At3g16980	O.I.	C.G.	H.G.
446.3	100.0	180.2	At2g12050	3768039	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
426.9	100.0	156.5	At1g67530	843074	armadillo/beta-catenin repeat family protein / U-box domain-containing family protein	F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;PMOFBV	O.I.	C.G.	H.G.
398.9	100.0	209.1	At1g73177	843651	BNS (BONSAI)	The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.	O.I.	C.G.	H.G.
394.5	100.0	283.1	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
390.4	100.0	143.5	At4g19540	827696	INDL (IND1(IRON-SULFUR PROTEIN REQUIRED FOR NADH DEHYDROGENASE)-LIKE)	F:unknown;P:unknown;C:mitochondrion;BOAMFP	O.I.	C.G.	H.G.
359.7	100.0	83.1	At1g62930	842594	-	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
345.2	100.0	298.2	At2g37975	818375	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
329.8	100.0	54.6	At2g23510	816883	SDT (SPERMIDINE DISINAPOYL ACYLTRANSFERASE)	F:spermidine:sinapoyl CoA N-acyltransferase activity, sinapoyl spermidine:sinapoyl CoA N-acyltransferase activity, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
304.7	100.0	1367.4	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
292.3	100.0	63.9	At4g32970	829434	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBF	O.I.	C.G.	H.G.
276.7	100.0	132.9	At4g35940	829749	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
266.3	100.0	80.1	At1g69440	843276	AGO7 (ARGONAUTE7)	Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.	O.I.	C.G.	H.G.
252.1	100.0	46.9	At2g03830	814909	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
222.2	100.0	249.3	At1g17690	838345	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVA	O.I.	C.G.	H.G.
222.0	100.0	24.0	At1g43980	840997	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMF	O.I.	C.G.	H.G.
216.5	100.0	96.4	At3g59790	825148	ATMPK10	member of MAP Kinase	O.I.	C.G.	H.G.
203.9	100.0	150.4	At5g27200	832778	ACP5 (acyl carrier protein 5)	encodes an acyl carrier protein	O.I.	C.G.	H.G.
202.9	100.0	86.4	At1g71440	843485	PFI (PFIFFERLING)	Encodes tubulin-folding cofactor E. Mutant embryos consist of one or a few grossly enlarged cells, surrounded by an endosperm that fails to cellularize and contains a few big nuclei.	O.I.	C.G.	H.G.
202.5	100.0	116.5	At5g47410	834788	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
201.0	100.0	40.2	At1g16830	838254	-	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;POMFBA	O.I.	C.G.	H.G.
191.6	100.0	44.6	At5g66300	836762	NAC105 (NAC DOMAIN CONTAINING PROTEIN 105)	Encodes a NAC-domain transcription factor. Expressed in the vascular tissue.	O.I.	C.G.	H.G.
191.5	100.0	99.6	At5g03140	831590	lectin protein kinase family protein	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
190.8	100.0	73.6	At2g46410	819249	CPC (CAPRICE)	Nuclear-localized R3-type MYB transcription factor. Positive regulator of hair-cell differentiation. Preferentially transcribed in hairless cells. Moves from atrichoblasts into trichoblast via plasmodesmata in a tissue-specific mode. N-terminus and part of the Myb domain are required for this movement, with W76 playing a crucial role. Capability to increase the size-exclusion limit of plasmodesmata. Regulated by WEREWOLF.	O.I.	C.G.	H.G.
184.9	100.0	39.3	At5g52220	835298	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
180.6	100.0	364.8	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
179.7	100.0	179.5	At3g54580	824623	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVA	O.I.	C.G.	H.G.
179.2	100.0	21.1	At5g19810	832101	proline-rich extensin-like family protein	F:unknown;P:unknown;C:endomembrane system;MBPOFVA	O.I.	C.G.	H.G.
178.1	100.0	112.0	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
175.1	100.0	75.3	At5g11510	831023	MYB3R-4 (myb domain protein 3R-4)	Arabidopsis thaliana putative c-myb-like transcription factor MYB3R-4	O.I.	C.G.	H.G.
167.9	100.0	68.3	At4g18465	827579	RNA helicase, putative	F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA	O.I.	C.G.	H.G.
166.2	100.0	87.7	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
165.8	100.0	209.9	At2g28290	817375	SYD (SPLAYED)	Encodes a SWI2/SNF2-like protein in the SNF2 subclass. Homozygous plants with null mutations exhibit premature termination of the meristem and carpelloid structures from the inflorescence meristem. Co-activator of floral homeotic gene expression. Acts with LFY to regulate shoot apical meristem identity. Required for meristem maintenance. Regulates flowering under a non-inductive photoperiod. It promotes the expression of CUC2 during cotyledon boundary formation. Affects reproductive shoot apical meristem function by regulating the expression of WUS. In CHiP experiments SYD binds to WUS promoter. Present as two forms in the nucleus, full-length and truncated, with the latter apparently lacking the C-terminal domain. The ratio of the two forms differs in juvenile and in adult tissues. The C-terminal domain is not required for activity.	O.I.	C.G.	H.G.
165.5	100.0	53.8	At5g07040	830595	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:endomembrane system;PMOFV	O.I.	C.G.	H.G.
161.7	99.9	70.5	At3g16980	820954	NRPB9A	One of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265	O.I.	C.G.	H.G.
159.2	99.9	169.9	At5g62640	836385	proline-rich family protein	nuclear targeted protein involved in flowering time regulation that affects flowering time independent of FLC	O.I.	C.G.	H.G.
156.2	99.9	123.0	At3g18110	821336	EMB1270 (embryo defective 1270)	F:unknown;P:embryonic development ending in seed dormancy;C:chloroplast;POMFBA	O.I.	C.G.	H.G.
155.0	99.9	73.1	At1g53260	841759	unknown protein	F:unknown;P:unknown;C:endomembrane system;MPFOBVA	O.I.	C.G.	H.G.
154.5	99.9	53.7	At2g21470	816686	SAE2 (SUMO-ACTIVATING ENZYME 2)	Encodes one of the two subunits of the SUMO activation enzyme required during sumolation. Sumolation is a post-translational protein modification process similar to ubiquitination during which a polypeptide (SUMO) is covalently attached to a target protein.	O.I.	C.G.	H.G.
154.0	99.9	110.8	At1g21090	838705	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:anchored to membrane;PMFOB	O.I.	C.G.	H.G.
151.1	99.9	105.8	At5g47455	834795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
149.2	99.9	189.5	At1g75510	843887	transcription initiation factor IIF beta subunit (TFIIF-beta) family protein	F:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPO	O.I.	C.G.	H.G.
148.6	99.9	513.3	At5g16970	831560	AT-AER (alkenal reductase)	encodes a 2-alkenal reductase (EC 1.3.1.74), plays a key role in the detoxification of reactive carbonyls	O.I.	C.G.	H.G.
146.8	99.9	217.4	At5g13410	831182	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:thylakoid, thylakoid lumen, chloroplast thylakoid membrane, chloroplast thylakoid lumen, chloroplast;BOPMFA	O.I.	C.G.	H.G.
144.1	99.9	326.6	At3g12920	820477	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:nucleus;MPOV	O.I.	C.G.	H.G.
137.8	99.9	69.1	At3g12170	820394	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
134.6	99.9	23.8	At5g37140	833686	tRNA-splicing endonuclease positive effector-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV	O.I.	C.G.	H.G.
133.3	99.9	50.0	At1g55380	841985	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOMPFVA	O.I.	C.G.	H.G.
127.5	99.9	89.8	At3g20430	821588	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	O.I.	C.G.	H.G.
125.8	99.9	28.0	At2g26520	817193	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
123.4	99.9	38.7	At1g61510	3767597	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
120.0	99.9	218.9	At2g45520	819160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFPB	O.I.	C.G.	H.G.
119.8	99.9	48.0	At2g36485	818223	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;FMP	O.I.	C.G.	H.G.
119.0	99.9	117.8	At1g19680	838555	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;OPMBF	O.I.	C.G.	H.G.
118.3	99.9	123.1	At1g63640	842668	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV	O.I.	C.G.	H.G.
118.0	99.9	201.3	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
116.5	99.9	39.4	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
113.7	99.9	173.4	At4g08410	826400	proline-rich extensin-like family protein	F:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVA	O.I.	C.G.	H.G.
113.4	99.9	76.7	At5g55700	835664	BAM4 (BETA-AMYLASE 4)	In vitro assay indicates no beta-amylase activity of BAM4. However mutation in BAM4 impairs starch breakdown. BAM4 may play a regulatory role.	O.I.	C.G.	H.G.
112.8	99.9	32.5	At5g26080	832677	proline-rich family protein	F:unknown;P:unknown;C:endomembrane system;MPBOFVA	O.I.	C.G.	H.G.
112.7	99.9	62.9	At1g60970	842388	clathrin adaptor complex small chain family protein	F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFO	O.I.	C.G.	H.G.
112.3	99.9	28.5	At2g32940	817856	AGO6 (ARGONAUTE 6)	Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.	O.I.	C.G.	H.G.
107.8	99.9	44.4	At3g06520	819830	agenet domain-containing protein	F:RNA binding;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
107.8	99.9	33.3	At5g01080	831873	beta-galactosidase	F:beta-galactosidase activity;P:carbohydrate metabolic process;C:beta-galactosidase complex;P	O.I.	C.G.	H.G.
106.4	99.9	63.6	At5g07700	830663	MYB76 (myb domain protein 76)	Encodes a putative transcription factor (MYB76).	O.I.	C.G.	H.G.
106.0	99.9	18.7	At5g41170	834119	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
103.4	99.9	323.4	At3g02190	820350	60S ribosomal protein L39 (RPL39B)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFP	O.I.	C.G.	H.G.
101.0	99.9	124.1	At2g20585	816581	NFD6 (NUCLEAR FUSION DEFECTIVE 6)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
98.5	99.9	95.6	At3g03900	821077	adenylylsulfate kinase, putative	F:transferase activity, transferring phosphorus-containing groups, kinase activity, ATP binding;P:sulfate assimilation;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
97.3	99.9	18.7	At4g28810		-	-	O.I.	C.G.	H.G.
96.2	99.9	79.4	At3g11520	820325	CYCB1	Encodes a B-type mitotic cyclin.	O.I.	C.G.	H.G.
95.9	99.9	123.1	At4g20140	827760	GSO1 (GASSHO1)	Encodes GASSHO1 (GSO1), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO1 and a homolog GSO2 (At5g44700) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
92.6	99.9	95.6	At3g15970	820841	Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein	F:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;MBOFPAV	O.I.	C.G.	H.G.
92.4	99.9	110.7	At1g16610	838230	SR45	SR spliceosome protein, interacts with SR33 and the U1-70K protein of the U1 snRNP.	O.I.	C.G.	H.G.
91.5	99.9	44.9	At1g74990	843837	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFV	O.I.	C.G.	H.G.
91.2	99.9	36.4	At3g28330	822461	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
90.5	99.9	36.0	At4g27850	828898	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBOFPVA	O.I.	C.G.	H.G.
90.0	99.9	113.9	At3g11030	820274	unknown protein	F:unknown;P:unknown;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
90.0	99.9	26.4	At1g69610	843297	structural constituent of ribosome	F:structural constituent of ribosome;P:N-terminal protein myristoylation, translation;C:ribosome, intracellular;OPMFB	O.I.	C.G.	H.G.
89.0	99.9	32.1	At5g20370	832159	serine-rich protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
85.8	99.9	35.8	At1g69240	843255	MES15 (METHYL ESTERASE 15)	Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.	O.I.	C.G.	H.G.
85.7	99.9	12.2	At5g33380	833316	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
85.5	99.9	156.6	At3g62630	825437	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBA	O.I.	C.G.	H.G.
84.9	99.9	107.8	At4g38150	829971	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POFMAB	O.I.	C.G.	H.G.
84.3	99.9	28.3	At1g72860	843617	disease resistance protein (TIR-NBS-LRR class), putative	F:transmembrane receptor activity, protein binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFA	O.I.	C.G.	H.G.
83.9	99.9	37.7	At2g12190	815688	cytochrome P450, putative	F:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:unknown;C:unknown;MPFBOAV	O.I.	C.G.	H.G.
83.5	99.9	53.4	At5g64010	836522	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
83.4	99.9	24.3	At5g55650	835659	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
82.3	99.9	29.8	At2g24840	817021	AGL61 (AGAMOUS-LIKE 61)	Encodes a member of the Agamous-like family of transcription factors. Localized to the nucleus in the central cell and endosperm of the female gametophyte. Loss of function mutations show reduced female fertility. Fifty percent of ovules have defective central cells with abnormal morphology and patterns of gene expression. Upon fertilization 50% of seeds abort. Using yeast two hybrid assays AGL61 was shown to interact with AGL80, another MADS box gene with similar defects in ovule development. These data suggest that AGL61 and 80 together are required for proper differentiation of the central cell.	O.I.	C.G.	H.G.
80.8	99.9	152.9	At4g36180	829775	leucine-rich repeat family protein	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
80.1	99.9	12.5	At3g42770	823312	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
78.3	99.9	31.4	At1g33220	840216	beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PO	O.I.	C.G.	H.G.
77.7	99.9	50.9	At4g29240	829045	leucine-rich repeat family protein / extensin family protein	F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
77.0	99.9	39.2	At4g29650	829086	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	F:cytidine deaminase activity, catalytic activity, zinc ion binding;P:pyrimidine salvage;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
76.0	99.9	312.7	At2g37120	818288	DNA-binding S1FA family protein	F:DNA binding;P:regulation of transcription;C:endomembrane system, nucleus;P	O.I.	C.G.	H.G.
76.0	99.9	41.2	At5g42060	834211	unknown protein	F:unknown;P:unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
76.0	99.9	29.4	At2g06820	815244	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133768
Assay name	Lindsey_1-20_torpedo-basal_Rep5_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133768 Assay name Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133768

Assay name Lindsey_1-20_torpedo-basal_Rep5_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues