CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133766

Assay name Lindsey_1-18_torpedo-root_Rep3_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2294.6 100.0 26.6 At1g26860 837037 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1834.6 100.0 1828.6 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. O.I. C.G. H.G.
1798.9 100.0 31.4 At3g59260 825095 pirin, putative F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA O.I. C.G. H.G.
869.8 100.0 15.4 At2g30925 817643 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
683.9 100.0 25.2 At2g06890 3768157 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
668.2 100.0 27.7 At2g13720 815856 ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing) F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV O.I. C.G. H.G.
658.6 100.0 33.0 At5g02900 831752 CYP96A13 member of CYP96A O.I. C.G. H.G.
602.4 100.0 15.4 At3g32280 823000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFO O.I. C.G. H.G.
589.6 100.0 23.9 At5g39480 833944 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
532.9 100.0 21.5 At1g67780 843103 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
510.7 100.0 26.0 At4g19480 827689 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
484.8 100.0 22.0 At5g35470 833510 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
474.3 100.0 34.1 At1g10420 - - O.I. C.G. H.G.
472.2 100.0 42.9 At5g26070 832676 hydroxyproline-rich glycoprotein family protein Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana) O.I. C.G. H.G.
468.0 100.0 32.2 At5g52350 835311 ATEXO70A3 (exocyst subunit EXO70 family protein A3) A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree. O.I. C.G. H.G.
466.8 100.0 24.1 At4g07700 3770342 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
464.8 100.0 15.0 At2g10490 3768467 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
455.0 100.0 19.7 At1g43950 840994 ARF23 (AUXIN RESPONSE FACTOR 23) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
446.8 100.0 440.7 At2g35500 818115 shikimate kinase-related F:unknown;P:aromatic amino acid family biosynthetic process;C:chloroplast;BOP O.I. C.G. H.G.
417.9 100.0 30.5 At3g21800 821734 UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8) F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 4'-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOF O.I. C.G. H.G.
404.6 100.0 30.3 At1g21430 838741 YUC11 F:NADP or NADPH binding, oxidoreductase activity, FAD binding, monooxygenase activity, flavin-containing monooxygenase activity;P:anatomical structure morphogenesis;C:membrane;BOFMPA O.I. C.G. H.G.
399.2 100.0 21.1 At3g47230 823876 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
383.1 100.0 28.7 At3g09620 820119 DEAD/DEAH box helicase, putative F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;MOBFPAV O.I. C.G. H.G.
375.3 100.0 20.1 At4g03670 825667 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
374.6 100.0 29.2 At1g30800 839962 - F:molecular_function unknown;P:unknown;C:anchored to membrane;PO O.I. C.G. H.G.
372.8 100.0 10.4 At4g07620 3770532 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
366.7 100.0 27.6 At3g06000 819771 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. C.G. H.G.
363.2 100.0 22.3 At4g03480 827906 protein binding F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
358.3 100.0 22.5 At5g40750 834075 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
357.0 100.0 15.7 At3g59860 3769741 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
347.7 100.0 12.6 At5g50500 835118 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
339.6 100.0 32.3 At4g07740 826252 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
336.1 100.0 14.2 At1g32000 840091 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
330.2 100.0 28.5 At3g14950 820724 TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2) F:binding;P:cell redox homeostasis;C:cellular_component unknown;OMBFPAV O.I. C.G. H.G.
327.0 100.0 32.4 At2g02270 3768666 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
323.6 100.0 24.5 At5g60290 836151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
320.3 100.0 28.0 At5g28920 833015 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown O.I. C.G. H.G.
319.9 100.0 25.2 At3g04660 819624 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
311.6 100.0 26.8 At4g31740 829302 - F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:endomembrane system;MFOP O.I. C.G. H.G.
311.2 100.0 26.8 At5g24250 832492 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
310.7 100.0 22.0 At5g28670 3770823 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
307.0 100.0 20.4 At2g26620 817203 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA O.I. C.G. H.G.
293.2 100.0 26.0 At1g55030 841945 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
291.4 100.0 30.3 At4g13320 826962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
287.0 100.0 15.4 At2g18830 816398 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
286.7 100.0 57.5 At1g53060 841740 legume lectin family protein F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
285.8 100.0 23.9 At5g46010 834641 homeobox-leucine zipper transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:vacuole;P O.I. C.G. H.G.
280.9 100.0 32.9 At2g39620 818545 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
275.2 100.0 25.2 At5g38370 833820 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:intracellular;P O.I. C.G. H.G.
274.7 100.0 21.2 At1g63590 842664 receptor-like protein kinase-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
270.9 100.0 17.1 At4g20250 827772 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
270.7 100.0 28.0 At5g52480 835324 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB O.I. C.G. H.G.
270.3 100.0 29.5 At4g31115 829239 unknown protein F:unknown;P:unknown;C:unknown;OBP O.I. C.G. H.G.
268.9 100.0 17.3 At1g32680 840162 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
267.8 100.0 20.8 At4g03153 828056 kinase interacting family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
261.6 100.0 19.6 At2g24340 816970 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PV O.I. C.G. H.G.
260.1 100.0 26.1 At1g21510 838750 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOFVPB O.I. C.G. H.G.
259.1 100.0 17.5 At4g07425 3769923 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
257.4 100.0 33.9 At3g13420 820542 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
252.7 100.0 25.9 At5g52130 835289 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
252.7 100.0 13.2 At4g26800 828787 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
252.6 100.0 23.2 At3g04800 819640 ATTIM23-3 F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;MFPO O.I. C.G. H.G.
250.1 100.0 140.7 At5g24130 832478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM O.I. C.G. H.G.
249.3 100.0 19.7 At3g49520 824114 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
248.2 100.0 37.4 At1g40230 840758 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
245.0 100.0 29.8 At3g31023 3769170 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
242.6 100.0 28.2 At1g62170 842513 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF O.I. C.G. H.G.
239.7 100.0 31.5 At1g51810 841608 ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA O.I. C.G. H.G.
238.3 100.0 19.1 At2g30370 817587 allergen-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
236.5 100.0 54.8 At2g24310 816967 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA O.I. C.G. H.G.
235.8 100.0 54.4 At3g14000 820614 ATBRXL2 Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. O.I. C.G. H.G.
233.8 100.0 11.2 At3g42400 823236 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
230.6 100.0 24.6 At1g58450 842214 peptidyl-prolyl cis-trans isomerase FKBP-type family protein F:peptidyl-prolyl cis-trans isomerase activity, binding;P:protein folding;C:unknown;MOPFB O.I. C.G. H.G.
230.3 100.0 19.5 At5g35420 3771276 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
226.5 100.0 23.4 At3g42580 823270 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
226.5 100.0 18.5 At1g43010 840900 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
226.4 100.0 19.5 At4g09850 826574 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
222.4 100.0 6.6 At5g49590 835021 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
219.1 100.0 12.5 At2g10630 3767858 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
218.0 100.0 41.4 At4g09880 826578 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
217.7 100.0 21.4 At4g09480 3770265 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
216.6 100.0 20.1 At1g47990 841217 ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4) Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities. O.I. C.G. H.G.
212.0 100.0 29.2 At1g77340 844070 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
211.9 100.0 23.4 At4g04230 3770148 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
210.5 100.0 17.3 At5g45850 834625 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
208.7 100.0 24.4 At3g55100 824676 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV O.I. C.G. H.G.
205.6 100.0 46.0 At2g15750 816069 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
205.6 100.0 29.9 At1g72490 843581 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
204.4 100.0 1857.3 At2g40205 818612 60S ribosomal protein L41 (RPL41C) F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO O.I. C.G. H.G.
204.1 100.0 31.1 At3g20980 821649 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
203.2 100.0 19.2 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
203.1 100.0 24.3 At5g56310 835730 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
201.5 100.0 30.1 At3g29680 822646 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:endomembrane system;PF O.I. C.G. H.G.
200.2 100.0 33.0 At2g27940 817338 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
200.2 100.0 28.8 At5g23180 832382 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
199.6 100.0 19.8 At5g40940 834095 FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20) F:molecular_function unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
198.7 100.0 16.9 At2g21690 816707 RNA-binding protein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
198.2 100.0 25.0 At5g22960 832360 serine carboxypeptidase S10 family protein F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB O.I. C.G. H.G.
196.3 100.0 20.0 At4g19850 827729 ATPP2-A2 encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family. O.I. C.G. H.G.
196.1 100.0 104.9 At3g24660 822062 TMKL1 (transmembrane kinase-like 1) member of Receptor kinase-like protein family O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2294.6	100.0	26.6	At1g26860	837037	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1834.6	100.0	1828.6	At4g28190	828934	ULT1 (ULTRAPETALA1)	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.	O.I.	C.G.	H.G.
1798.9	100.0	31.4	At3g59260	825095	pirin, putative	F:calmodulin binding;P:unknown;C:cellular_component unknown;BOFPMA	O.I.	C.G.	H.G.
869.8	100.0	15.4	At2g30925	817643	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
683.9	100.0	25.2	At2g06890	3768157	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
668.2	100.0	27.7	At2g13720	815856	ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)	F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPV	O.I.	C.G.	H.G.
658.6	100.0	33.0	At5g02900	831752	CYP96A13	member of CYP96A	O.I.	C.G.	H.G.
602.4	100.0	15.4	At3g32280	823000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
589.6	100.0	23.9	At5g39480	833944	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
532.9	100.0	21.5	At1g67780	843103	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
510.7	100.0	26.0	At4g19480	827689	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
484.8	100.0	22.0	At5g35470	833510	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
474.3	100.0	34.1	At1g10420		-	-	O.I.	C.G.	H.G.
472.2	100.0	42.9	At5g26070	832676	hydroxyproline-rich glycoprotein family protein	Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana)	O.I.	C.G.	H.G.
468.0	100.0	32.2	At5g52350	835311	ATEXO70A3 (exocyst subunit EXO70 family protein A3)	A member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into eight clusters on the phylogenetic tree.	O.I.	C.G.	H.G.
466.8	100.0	24.1	At4g07700	3770342	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
464.8	100.0	15.0	At2g10490	3768467	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
455.0	100.0	19.7	At1g43950	840994	ARF23 (AUXIN RESPONSE FACTOR 23)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
446.8	100.0	440.7	At2g35500	818115	shikimate kinase-related	F:unknown;P:aromatic amino acid family biosynthetic process;C:chloroplast;BOP	O.I.	C.G.	H.G.
417.9	100.0	30.5	At3g21800	821734	UGT71B8 (UDP-GLUCOSYL TRANSFERASE 71B8)	F:quercetin 3-O-glucosyltransferase activity, UDP-glycosyltransferase activity, quercetin 4'-O-glucosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:endomembrane system;PMBOF	O.I.	C.G.	H.G.
404.6	100.0	30.3	At1g21430	838741	YUC11	F:NADP or NADPH binding, oxidoreductase activity, FAD binding, monooxygenase activity, flavin-containing monooxygenase activity;P:anatomical structure morphogenesis;C:membrane;BOFMPA	O.I.	C.G.	H.G.
399.2	100.0	21.1	At3g47230	823876	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
383.1	100.0	28.7	At3g09620	820119	DEAD/DEAH box helicase, putative	F:helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:unknown;C:cellular_component unknown;MOBFPAV	O.I.	C.G.	H.G.
375.3	100.0	20.1	At4g03670	825667	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
374.6	100.0	29.2	At1g30800	839962	-	F:molecular_function unknown;P:unknown;C:anchored to membrane;PO	O.I.	C.G.	H.G.
372.8	100.0	10.4	At4g07620	3770532	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
366.7	100.0	27.6	At3g06000	819771	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOBPF	O.I.	C.G.	H.G.
363.2	100.0	22.3	At4g03480	827906	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
358.3	100.0	22.5	At5g40750	834075	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
357.0	100.0	15.7	At3g59860	3769741	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
347.7	100.0	12.6	At5g50500	835118	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
339.6	100.0	32.3	At4g07740	826252	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
336.1	100.0	14.2	At1g32000	840091	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
330.2	100.0	28.5	At3g14950	820724	TTL2 (Tetratricopetide-repeat Thioredoxin-Like 2)	F:binding;P:cell redox homeostasis;C:cellular_component unknown;OMBFPAV	O.I.	C.G.	H.G.
327.0	100.0	32.4	At2g02270	3768666	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
323.6	100.0	24.5	At5g60290	836151	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
320.3	100.0	28.0	At5g28920	833015	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown	O.I.	C.G.	H.G.
319.9	100.0	25.2	At3g04660	819624	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
311.6	100.0	26.8	At4g31740	829302	-	F:molecular_function unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:endomembrane system;MFOP	O.I.	C.G.	H.G.
311.2	100.0	26.8	At5g24250	832492	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
310.7	100.0	22.0	At5g28670	3770823	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
307.0	100.0	20.4	At2g26620	817203	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:carbohydrate metabolic process;C:endomembrane system;FPBOMA	O.I.	C.G.	H.G.
293.2	100.0	26.0	At1g55030	841945	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
291.4	100.0	30.3	At4g13320	826962	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
287.0	100.0	15.4	At2g18830	816398	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
286.7	100.0	57.5	At1g53060	841740	legume lectin family protein	F:carbohydrate binding, sugar binding;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
285.8	100.0	23.9	At5g46010	834641	homeobox-leucine zipper transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:vacuole;P	O.I.	C.G.	H.G.
280.9	100.0	32.9	At2g39620	818545	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
275.2	100.0	25.2	At5g38370	833820	zinc ion binding	F:zinc ion binding;P:biological_process unknown;C:intracellular;P	O.I.	C.G.	H.G.
274.7	100.0	21.2	At1g63590	842664	receptor-like protein kinase-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
270.9	100.0	17.1	At4g20250	827772	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
270.7	100.0	28.0	At5g52480	835324	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFB	O.I.	C.G.	H.G.
270.3	100.0	29.5	At4g31115	829239	unknown protein	F:unknown;P:unknown;C:unknown;OBP	O.I.	C.G.	H.G.
268.9	100.0	17.3	At1g32680	840162	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
267.8	100.0	20.8	At4g03153	828056	kinase interacting family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
261.6	100.0	19.6	At2g24340	816970	transcription factor	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PV	O.I.	C.G.	H.G.
260.1	100.0	26.1	At1g21510	838750	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;MOFVPB	O.I.	C.G.	H.G.
259.1	100.0	17.5	At4g07425	3769923	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
257.4	100.0	33.9	At3g13420	820542	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
252.7	100.0	25.9	At5g52130	835289	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
252.7	100.0	13.2	At4g26800	828787	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
252.6	100.0	23.2	At3g04800	819640	ATTIM23-3	F:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;MFPO	O.I.	C.G.	H.G.
250.1	100.0	140.7	At5g24130	832478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
249.3	100.0	19.7	At3g49520	824114	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
248.2	100.0	37.4	At1g40230	840758	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
245.0	100.0	29.8	At3g31023	3769170	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
242.6	100.0	28.2	At1g62170	842513	serpin family protein / serine protease inhibitor family protein	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVPBOAF	O.I.	C.G.	H.G.
239.7	100.0	31.5	At1g51810	841608	ATP binding / kinase/ protein binding / protein kinase/ protein serine/threonine kinase	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVA	O.I.	C.G.	H.G.
238.3	100.0	19.1	At2g30370	817587	allergen-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
236.5	100.0	54.8	At2g24310	816967	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMBFPVA	O.I.	C.G.	H.G.
235.8	100.0	54.4	At3g14000	820614	ATBRXL2	Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.	O.I.	C.G.	H.G.
233.8	100.0	11.2	At3g42400	823236	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
230.6	100.0	24.6	At1g58450	842214	peptidyl-prolyl cis-trans isomerase FKBP-type family protein	F:peptidyl-prolyl cis-trans isomerase activity, binding;P:protein folding;C:unknown;MOPFB	O.I.	C.G.	H.G.
230.3	100.0	19.5	At5g35420	3771276	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
226.5	100.0	23.4	At3g42580	823270	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
226.5	100.0	18.5	At1g43010	840900	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
226.4	100.0	19.5	At4g09850	826574	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
222.4	100.0	6.6	At5g49590	835021	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
219.1	100.0	12.5	At2g10630	3767858	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
218.0	100.0	41.4	At4g09880	826578	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
217.7	100.0	21.4	At4g09480	3770265	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
216.6	100.0	20.1	At1g47990	841217	ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)	Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.	O.I.	C.G.	H.G.
212.0	100.0	29.2	At1g77340	844070	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
211.9	100.0	23.4	At4g04230	3770148	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
210.5	100.0	17.3	At5g45850	834625	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
208.7	100.0	24.4	At3g55100	824676	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMAFPV	O.I.	C.G.	H.G.
205.6	100.0	46.0	At2g15750	816069	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
205.6	100.0	29.9	At1g72490	843581	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
204.4	100.0	1857.3	At2g40205	818612	60S ribosomal protein L41 (RPL41C)	F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFO	O.I.	C.G.	H.G.
204.1	100.0	31.1	At3g20980	821649	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
203.2	100.0	19.2	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
203.1	100.0	24.3	At5g56310	835730	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
201.5	100.0	30.1	At3g29680	822646	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:endomembrane system;PF	O.I.	C.G.	H.G.
200.2	100.0	33.0	At2g27940	817338	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
200.2	100.0	28.8	At5g23180	832382	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
199.6	100.0	19.8	At5g40940	834095	FLA20 (PUTATIVE FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 20)	F:molecular_function unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
198.7	100.0	16.9	At2g21690	816707	RNA-binding protein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
198.2	100.0	25.0	At5g22960	832360	serine carboxypeptidase S10 family protein	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PFMOB	O.I.	C.G.	H.G.
196.3	100.0	20.0	At4g19850	827729	ATPP2-A2	encodes a protein similar to phloem protein 2 in cucumber. a member of a large gene family.	O.I.	C.G.	H.G.
196.1	100.0	104.9	At3g24660	822062	TMKL1 (transmembrane kinase-like 1)	member of Receptor kinase-like protein family	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133766
Assay name	Lindsey_1-18_torpedo-root_Rep3_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133766 Assay name Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133766

Assay name Lindsey_1-18_torpedo-root_Rep3_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues