Microarray experiments to specifically-expressed genes

GSM ID GSM133765
Assay name Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2003.7100.0196.5At5g10310830895unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
549.7100.08.0At3g19780821515-F:unknown;P:unknown;C:endomembrane system;OMBPFO.I.C.G.H.G.
490.8100.052.6At5g13270831168pentatricopeptide (PPR) repeat-containing proteinEncodes RARE1 (Required for accD RNA Editing 1), a trans-factor essential for C-to-U editing of the chloroplast accD transcript. RARE1 carries 15 PPR (pentatricopeptide repeat) motifs, an E/E+ and a DYW domain (C-terminal tripeptide).O.I.C.G.H.G.
308.8100.0101.5At4g29240829045leucine-rich repeat family protein / extensin family proteinF:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
308.2100.0100.9At1g18670838448IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1)Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.O.I.C.G.H.G.
264.0100.0103.7At1g62830842582LDL1 (LSD1-LIKE1)Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.O.I.C.G.H.G.
247.8100.069.5At1g76420843975CUC3 (CUP SHAPED COTYLEDON3)Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.O.I.C.G.H.G.
219.9100.069.8At2g37510818327RNA-binding protein, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.C.G.H.G.
204.2100.075.3At1g04900839386unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FBOPMO.I.C.G.H.G.
199.3100.0506.3At2g28020817346-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
180.7100.0427.4At3g0219082035060S ribosomal protein L39 (RPL39B)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
163.099.981.8At2g43260818928F-box family protein / S locus-relatedF:unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
157.699.931.4At1g30515839931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
138.499.9120.3At5g38110833791ASF1B (ANTI- SILENCING FUNCTION 1B)This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.O.I.C.G.H.G.
138.499.984.7At5g47670834818NF-YB6 (NUCLEAR FACTOR Y, SUBUNIT B6)F:transcription activator binding, transcription factor activity, transcription activator activity;P:positive regulation of gene-specific transcription, regulation of transcription;C:nucleus, intracellular;MPFOAO.I.C.G.H.G.
137.899.9193.2At1g08700837391presenilin family proteinEncodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.O.I.C.G.H.G.
136.699.981.7At3g20270821571lipid-binding serum glycoprotein family proteinF:lipid binding;P:biological_process unknown;C:unknown;MPOAO.I.C.G.H.G.
121.499.990.9At4g37740829930AtGRF2 (GROWTHREGULATING FACTOR 2)Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flowerO.I.C.G.H.G.
108.899.9105.5At1g31470840037NFD4 (NUCLEAR FUSION DEFECTIVE 4)F:unknown;P:response to salt stress;C:mitochondrion;PBFOAMO.I.C.G.H.G.
107.699.990.0At5g08460830745GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
105.599.971.1At1g02490839518unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
96.399.9223.8At2g47640819377small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putativeF:molecular_function unknown;P:unknown;C:nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOPAO.I.C.G.H.G.
92.499.912.8At1g14687838033AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO.I.C.G.H.G.
83.899.928.7At1g31150840000transcription factorF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.H.G.
83.799.9462.8At3g12050820379Aha1 domain-containing proteinF:ATPase activator activity, chaperone binding;P:response to stress;C:cytoplasm;MFOPBO.I.C.G.H.G.
82.299.965.2At2g29690817519ASA2 (ANTHRANILATE SYNTHASE 2)Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.O.I.C.G.H.G.
80.699.936.3At1g67690843094metalloendopeptidaseF:metalloendopeptidase activity;P:proteolysis;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
78.499.9250.4At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
76.999.940.8At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
75.099.953.2At1g31920840082pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.C.G.H.G.
74.799.915.7At5g38440833832self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
68.199.9244.3At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
67.399.87.8At4g09930826582avirulence-responsive family protein / avirulence induced gene (AIG1) family proteinF:GTP binding;P:response to bacterium;C:cellular_component unknown;MOBPFVAO.I.C.G.H.G.
65.399.810.1At4g05570825911transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
64.899.81045.5At2g4020581861260S ribosomal protein L41 (RPL41C)F:structural constituent of ribosome;P:translation;C:cytosolic large ribosomal subunit, ribosome;MPFOO.I.C.G.H.G.
64.599.839.5At1g77580844093myosin heavy chain-relatedF:unknown;P:unknown;C:unknown;MOBFPAVO.I.C.G.H.G.
62.999.8272.2At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
62.799.84.9At1g79100844251arginine/serine-rich protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
61.599.8173.7At3g62790825454NADH-ubiquinone oxidoreductase-relatedF:molecular_function unknown;P:biological_process unknown;C:mitochondrion;FPOMO.I.C.G.H.G.
60.299.866.6At2g01640814693unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFO.I.C.G.H.G.
56.199.843.8At5g64010836522unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
55.999.8129.4At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
52.899.87.8At2g13720815856ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)F:DNA topoisomerase (ATP-hydrolyzing) activity, DNA binding, ATP binding;P:DNA topological change;C:chromosome;FOMPVO.I.C.G.H.G.
51.799.8129.0At1g48160841235signal recognition particle 19 kDa protein, putative / SRP19, putativeF:7S RNA binding;P:protein targeting, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;MFAOPO.I.C.G.H.G.
51.199.86.9At2g04380814977unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
50.299.85.0At2g04600815002transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
49.899.841.4At3g16700820922fumarylacetoacetate hydrolase family proteinF:catalytic activity;P:metabolic process;C:cellular_component unknown;BOFMAPO.I.C.G.H.G.
48.699.831.1At3g62920825467unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
48.199.840.9At1g70210843357CYCD1Encodes a D-type cyclin that physically interacts with CDC2A. Its expression is upregulated early during germination.O.I.C.G.H.G.
47.399.85.1At1g63320842638pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POFMBAO.I.C.G.H.G.
47.199.846.6At5g06240830511emb2735 (embryo defective 2735)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PO.I.C.G.H.G.
46.899.823.2At3g04980819658DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
46.799.8201.9At5g48870834945SAD1 (SUPERSENSITIVE TO ABA AND DROUGHT 1)SAD1 encodes a polypeptide similar to multifunctional Sm-like snRNP proteins that are required for mRNA splicing, export, and degradation. Mutation in this gene increases plant sensitivity to drought stress and ABA in seed germination, root growth, and the expression of some stress-responsive genes.O.I.C.G.H.G.
46.399.8129.4At5g16120831469hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:unknown;C:unknown;BOPMFVAO.I.C.G.H.G.
46.299.87.6At5g45240834560transmembrane receptorF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PMBOFAO.I.C.G.H.G.
46.099.813.4At4g28560828974RIC7 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 7)encodes a member of a novel protein family that contains contain a CRIB (for Cdc42/Rac-interactive binding) motif required for their specific interaction with GTP-bound Rop1 (plant-specific Rho GTPase). Most similar to RIC6 and RIC8 (subfamily group II). Gene is expressed in all tissues examined.O.I.C.G.H.G.
45.899.818.2At2g32940817856AGO6 (ARGONAUTE 6)Encodes a nuclear localized 879-amino-acid protein that contains conserved PAZ and PIWI domains that is important for the accumulation of specific heterochromatin-related siRNAs, and for DNA methylation and transcriptional gene silencing.O.I.C.G.H.G.
45.499.85.0At1g39430840698transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
44.899.815.0At1g63870842691disease resistance protein (TIR-NBS-LRR class), putativeF:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PMBOFAVO.I.C.G.H.G.
43.099.876.7At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
42.299.81593.8At3g1874082140560S ribosomal protein L30 (RPL30C)F:structural constituent of ribosome;P:translation;C:cytosolic ribosome, cytosolic large ribosomal subunit;MOAFPBO.I.C.G.H.G.
41.899.821.2At2g35160818083SUVH5 (SU(VAR)3-9 HOMOLOG 5)Encodes SU(var)3-9 homologue 5 (SUVH5). SUVH5 has histone methyltransferase (MTase) activity in vitro and contributes to the maintenance of H3 mK9 (methylation of histone H3 at Lys-9) and CMT3-mediated non-CG methylation in vivo. This is a member of a subfamily of SET proteins that shares a conserved SRA domain.O.I.C.G.H.G.
41.499.84.5At4g08880826465transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
41.399.82087.1At2g18020816314EMB2296 (embryo defective 2296)F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:in 7 components;BOPMAFO.I.C.G.H.G.
41.399.86.6At3g323003769265transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
41.299.86.3At2g01200814648IAA32 (INDOLE-3-ACETIC ACID INDUCIBLE 32)Belongs to auxin inducible gene family.O.I.C.G.H.G.
40.999.89.8At2g158103768573transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
40.399.870.0At5g02560831891HTA12Encodes HTA12, a histone H2A protein.O.I.C.G.H.G.
40.199.853.2At4g03240828013FH (FRATAXIN HOMOLOG)Encodes AtFH, a frataxin homolog. Frataxin is required for the biogenesis of mitochondria in different organisms. AtFH knock-out mutants are lethal. Required for full activity of mitochondrial Fe-S proteins. Deficiency of AtFH induces oxidative stress.O.I.C.G.H.G.
39.699.810.2At4g15060827169F-box protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFO.I.C.G.H.G.
39.199.834.7At3g16980820954NRPB9AOne of two highly similar, non-catalytic subunits common to nuclear DNA-directed RNA polymerases II, IV and V; homologous to budding yeast RPB9. Appears to be redundant with At4g16265O.I.C.G.H.G.
39.099.8863.8At3g1608082085360S ribosomal protein L37 (RPL37C)F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic large ribosomal subunit, ribosome;MAOFPO.I.C.G.H.G.
38.899.83.7At2g122303768490-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
38.799.8136.0At1g05180839286AXR1 (AUXIN RESISTANT 1)Encodes a subunit of the RUB1 activating enzyme that regulates the protein degradation activity of Skp1-Cullin-Fbox complexes, primarily, but not exclusively, affecting auxin responses. Acts alongside AS1 to exclude BP expression from leaves.O.I.C.G.H.G.
38.499.889.0At1g33265840221unknown proteinF:unknown;P:biological_process unknown;C:chloroplast, membrane;PMBOFO.I.C.G.H.G.
38.199.85.7At1g31620840049unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
37.499.713.0At3g17620821029F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOO.I.C.G.H.G.
37.399.7355.5At1g67250843045proteasome maturation factor UMP1 family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
36.899.711.4At2g129103768701transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
36.499.7110.5At4g00740828020dehydration-responsive protein-relatedF:unknown;P:biological_process unknown;C:Golgi apparatus;PBOAO.I.C.G.H.G.
36.499.77.0At5g05050830387peptidase C1A papain family proteinF:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMOO.I.C.G.H.G.
36.299.76.5At2g05090815057transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
35.699.775.4At3g04680819626CLPS3 (CLP-SIMILAR PROTEIN 3)Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.O.I.C.G.H.G.
35.499.71309.4At4g3386582952940S ribosomal protein S29 (RPS29C)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;MAOPFO.I.C.G.H.G.
35.199.715.0At1g09700837498HYL1 (HYPONASTIC LEAVES 1)Encodes a nuclear dsRNA binding protein. Involved in mRNA cleavage. The mutant is characterized by shorter stature, delayed flowering, leaf hyponasty, reduced fertility, decreased rate of root growth, and an altered root gravitropic response. It also exhibits less sensitivity to auxin and cytokinin.O.I.C.G.H.G.
34.899.736.6At1g2310083891810 kDa chaperonin, putativeF:ATP binding;P:protein folding;C:mitochondrion;BOMPFVO.I.C.G.H.G.
34.599.715.7At2g160003768393transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
33.999.719.5At3g28020822426-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.699.739.9At2g25920817133-F:molecular_function unknown;P:biological_process unknown;C:unknown;BPOFMO.I.C.G.H.G.
33.399.751.8At4g10620826654-F:unknown;P:biological_process unknown;C:chloroplast;BMFOPAO.I.C.G.H.G.
33.399.75.8At1g53970841835unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknownO.I.C.G.H.G.
33.299.774.6At2g44520819059COX10 (cytochrome c oxidase 10)F:protoheme IX farnesyltransferase activity, prenyltransferase activity;P:heme biosynthetic process;C:integral to membrane, mitochondrial membrane;OBMFAPO.I.C.G.H.G.
33.199.7236.3At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
33.199.735.4At1g02110839234proline-rich family proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;PMFOBVO.I.C.G.H.G.
33.199.714.4At4g16600827361transferase, transferring glycosyl groups / transferase, transferring hexosyl groupsF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process, biosynthetic process;C:endomembrane system;PMFOBVO.I.C.G.H.G.
32.999.711.8At1g67450843065F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
32.899.731.4At5g51910835266TCP family transcription factor, putativeF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
32.799.7126.8At4g16390827333-F:unknown;P:unknown;C:chloroplast;POFMBAO.I.C.G.H.G.
32.499.7498.7At5g64140836535RPS28 (RIBOSOMAL PROTEIN S28)Encodes a putative ribosomal protein S28.O.I.C.G.H.G.
32.399.759.0At5g58410835954binding / protein binding / zinc ion bindingF:protein binding, binding, zinc ion binding;P:unknown;C:unknown;MFOPBO.I.C.G.H.G.



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