CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133763

Assay name Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1960.7 100.0 449.0 At5g48310 834884 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM O.I. C.G. H.G.
658.8 100.0 221.7 At4g35530 829705 phosphatidylinositolglycan-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
620.4 100.0 44.1 At5g42110 834216 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
546.2 100.0 703.7 At5g47500 834800 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM O.I. C.G. H.G.
425.8 100.0 89.8 At4g28330 828948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
332.2 100.0 109.8 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
313.0 100.0 43.3 At5g51380 835212 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB O.I. C.G. H.G.
307.5 100.0 84.2 At1g26660 839206 c-myc binding protein, putative / prefoldin, putative F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB O.I. C.G. H.G.
293.3 100.0 336.7 At1g53520 841787 chalcone-flavanone isomerase-related F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBF O.I. C.G. H.G.
236.3 100.0 99.6 At1g72190 843551 oxidoreductase family protein F:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPV O.I. C.G. H.G.
178.6 100.0 206.1 At5g18590 831977 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV O.I. C.G. H.G.
173.4 100.0 34.0 At2g14690 815957 endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds Encodes a putative glycosyl hydrolase family 10 protein (xylanase). O.I. C.G. H.G.
168.4 100.0 97.9 At5g58980 836015 ceramidase family protein F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP O.I. C.G. H.G.
168.2 100.0 190.7 At4g13140 - - O.I. C.G. H.G.
168.1 100.0 217.9 At5g42220 834227 ubiquitin family protein F:unknown;P:protein modification process;C:unknown;MOPFBVA O.I. C.G. H.G.
164.5 100.0 348.2 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
160.0 99.9 111.0 At3g42660 823286 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV O.I. C.G. H.G.
159.0 99.9 89.8 At2g01630 814692 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
152.2 99.9 117.0 At2g41990 818799 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
145.7 99.9 211.4 At1g59990 842293 DEAD/DEAH box helicase, putative (RH22) F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:chloroplast;BMOFPAV O.I. C.G. H.G.
144.4 99.9 354.6 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. O.I. C.G. H.G.
138.4 99.9 198.5 At5g55130 835604 CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5) putative molybdopterin synthase sulphurylase (cnx5) O.I. C.G. H.G.
128.4 99.9 217.9 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA O.I. C.G. H.G.
122.1 99.9 489.1 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
114.6 99.9 73.7 At2g07170 815286 binding F:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMA O.I. C.G. H.G.
110.7 99.9 326.7 At1g12910 837849 ATAN11 (ANTHOCYANIN11) Encodes a protein with similarity to the petunia WD repeat protein an11. O.I. C.G. H.G.
109.3 99.9 198.8 At5g16120 831469 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFVA O.I. C.G. H.G.
105.6 99.9 228.0 At4g16390 827333 - F:unknown;P:unknown;C:chloroplast;POFMBA O.I. C.G. H.G.
103.9 99.9 312.6 At4g13780 827012 methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV O.I. C.G. H.G.
103.9 99.9 222.3 At4g31120 829240 SKB1 (SHK1 BINDING PROTEIN 1) Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification. O.I. C.G. H.G.
101.9 99.9 79.2 At4g10030 826594 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:chloroplast;BOMFPAV O.I. C.G. H.G.
99.6 99.9 613.8 At4g15910 827273 ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21) encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants. O.I. C.G. H.G.
97.9 99.9 473.6 At1g76670 844000 transporter-related F:unknown;P:response to nematode;C:membrane;PMFOB O.I. C.G. H.G.
94.2 99.9 179.9 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
93.8 99.9 138.1 At1g79150 844256 binding F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA O.I. C.G. H.G.
93.3 99.9 65.8 At1g61065 842398 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
89.0 99.9 146.1 At1g53290 841763 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB O.I. C.G. H.G.
88.9 99.9 151.9 At1g72340 843566 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. C.G. H.G.
88.3 99.9 46.3 At5g66940 836828 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO O.I. C.G. H.G.
86.7 99.9 152.1 At3g06310 819805 NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO O.I. C.G. H.G.
84.8 99.9 378.5 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
80.8 99.9 30.5 At1g61400 842434 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
80.1 99.9 410.4 At5g03345 831867 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO O.I. C.G. H.G.
79.5 99.9 191.7 At3g02690 821274 integral membrane family protein F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF O.I. C.G. H.G.
78.7 99.9 110.1 At4g00238 825892 DNA-binding storekeeper protein-related F:unknown;P:biological_process unknown;C:nucleolus;OMPFBV O.I. C.G. H.G.
76.8 99.9 214.4 At4g38490 830005 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
76.0 99.9 44.3 At4g09520 826536 catalytic/ metal ion binding / phosphoglycerate mutase F:phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:metabolic process;C:cellular_component unknown;BAOP O.I. C.G. H.G.
75.7 99.9 195.3 At3g59310 825100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA O.I. C.G. H.G.
74.3 99.9 40.1 At5g22810 832344 GDSL-motif lipase, putative F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
73.7 99.9 81.6 At3g53380 824506 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
73.4 99.9 78.2 At1g73100 843641 SUVH3 (SU(VAR)3-9 HOMOLOG 3) Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. O.I. C.G. H.G.
73.4 99.9 49.2 At2g13840 815867 PHP domain-containing protein F:DNA binding, DNA-directed DNA polymerase activity, catalytic activity;P:DNA replication;C:cellular_component unknown;BOAPF O.I. C.G. H.G.
72.5 99.9 72.3 At3g02000 820200 ROXY1 Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN). O.I. C.G. H.G.
71.5 99.9 492.6 At5g13000 831140 ATGSL12 (glucan synthase-like 12) encodes a gene similar to callose synthase O.I. C.G. H.G.
70.7 99.9 84.0 At5g57920 835903 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
68.0 99.9 33.8 At1g04150 839249 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV O.I. C.G. H.G.
67.2 99.8 73.3 At5g13960 831244 SUVH4 (SU(VAR)3-9 HOMOLOG 4) Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres. O.I. C.G. H.G.
67.0 99.8 70.4 At4g28830 829004 methyltransferase/ nucleic acid binding F:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPF O.I. C.G. H.G.
66.7 99.8 202.7 At1g05940 837104 CAT9 (CATIONIC AMINO ACID TRANSPORTER 9) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. O.I. C.G. H.G.
66.1 99.8 85.3 At3g26640 822276 LWD2 (LIGHT-REGULATED WD 2) F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
65.8 99.8 595.7 At2g46540 819266 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P O.I. C.G. H.G.
63.6 99.8 745.3 At5g59870 836109 HTA6 Encodes HTA6, a histone H2A protein. O.I. C.G. H.G.
63.3 99.8 43.0 At1g74420 843783 FUT3 (FUCOSYLTRANSFERASE 3) Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1. O.I. C.G. H.G.
63.0 99.8 23.1 At3g28420 822472 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
62.6 99.8 25.4 At3g10200 820182 dehydration-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
62.1 99.8 690.0 At5g64140 836535 RPS28 (RIBOSOMAL PROTEIN S28) Encodes a putative ribosomal protein S28. O.I. C.G. H.G.
62.1 99.8 54.1 At5g62410 836362 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) SMC2-1 (SMC2) O.I. C.G. H.G.
61.3 99.8 241.6 At4g12060 826814 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. C.G. H.G.
61.1 99.8 131.4 At5g40960 834098 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
59.4 99.8 128.3 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO O.I. C.G. H.G.
58.7 99.8 193.8 At5g04490 830328 VTE5 (vitamin E pathway gene5) Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis. O.I. C.G. H.G.
57.8 99.8 225.0 At5g15320 831384 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
57.6 99.8 45.4 At2g01580 814687 unknown protein F:unknown;P:unknown;C:unknown;P O.I. C.G. H.G.
57.2 99.8 62.8 At5g46680 834711 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
57.2 99.8 50.5 At4g23750 828475 CRF2 (CYTOKININ RESPONSE FACTOR 2) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
57.2 99.8 24.6 At2g37880 818364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
54.5 99.8 54.9 At1g48050 841223 KU80 Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation. O.I. C.G. H.G.
53.8 99.8 427.6 At5g05370 830419 ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P O.I. C.G. H.G.
53.7 99.8 52.4 At3g13620 820565 amino acid permease family protein F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BMOPFA O.I. C.G. H.G.
52.7 99.8 184.7 At2g30000 817551 - F:unknown;P:unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
52.5 99.8 27.0 At4g02750 828187 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:mitochondrion;POMFB O.I. C.G. H.G.
52.1 99.8 308.1 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. O.I. C.G. H.G.
51.9 99.8 122.2 At1g79050 844246 DNA repair protein recA F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:chloroplast;BOAMPFV O.I. C.G. H.G.
51.9 99.8 73.2 At5g26940 832752 exonuclease family protein F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular, chloroplast;BOMPVA O.I. C.G. H.G.
51.2 99.8 34.7 At4g27240 828832 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO O.I. C.G. H.G.
49.5 99.8 102.6 At1g10310 837570 short-chain dehydrogenase/reductase (SDR) family protein encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives. O.I. C.G. H.G.
49.0 99.8 19.5 At5g18540 831972 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA O.I. C.G. H.G.
48.8 99.8 68.9 At1g18490 838430 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
48.0 99.8 38.4 At1g30220 839902 INT2 (INOSITOL TRANSPORTER 2) F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV O.I. C.G. H.G.
47.4 99.8 42.2 At4g11640 826769 ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE) Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases. O.I. C.G. H.G.
46.7 99.8 535.4 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
46.3 99.8 449.5 At5g66680 836801 DGL1 Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins. O.I. C.G. H.G.
45.3 99.8 72.4 At3g61640 825337 AGP20 F:unknown;P:biological_process unknown;C:anchored to membrane;P O.I. C.G. H.G.
45.3 99.8 44.0 At1g68780 843209 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV O.I. C.G. H.G.
44.9 99.8 31.1 At1g50000 841424 methyltransferase F:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPM O.I. C.G. H.G.
44.8 99.8 121.6 At3g05600 819726 epoxide hydrolase, putative F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA O.I. C.G. H.G.
44.3 99.8 35.1 At4g18465 827579 RNA helicase, putative F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA O.I. C.G. H.G.
43.8 99.8 40.8 At5g20580 832180 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBO O.I. C.G. H.G.
43.6 99.8 24.2 At3g19300 821464 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
42.1 99.8 15.5 At5g11320 831003 YUC4 (YUCCA4) Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1960.7	100.0	449.0	At5g48310	834884	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POM	O.I.	C.G.	H.G.
658.8	100.0	221.7	At4g35530	829705	phosphatidylinositolglycan-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
620.4	100.0	44.1	At5g42110	834216	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
546.2	100.0	703.7	At5g47500	834800	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM	O.I.	C.G.	H.G.
425.8	100.0	89.8	At4g28330	828948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
332.2	100.0	109.8	At5g01370	831905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
313.0	100.0	43.3	At5g51380	835212	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPOFB	O.I.	C.G.	H.G.
307.5	100.0	84.2	At1g26660	839206	c-myc binding protein, putative / prefoldin, putative	F:unfolded protein binding;P:protein folding;C:prefoldin complex;MFOPAB	O.I.	C.G.	H.G.
293.3	100.0	336.7	At1g53520	841787	chalcone-flavanone isomerase-related	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBF	O.I.	C.G.	H.G.
236.3	100.0	99.6	At1g72190	843551	oxidoreductase family protein	F:in 6 functions;P:homoserine biosynthetic process, metabolic process;C:unknown;BOFMAPV	O.I.	C.G.	H.G.
178.6	100.0	206.1	At5g18590	831977	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV	O.I.	C.G.	H.G.
173.4	100.0	34.0	At2g14690	815957	endo-1,4-beta-xylanase/ hydrolase, hydrolyzing O-glycosyl compounds	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	O.I.	C.G.	H.G.
168.4	100.0	97.9	At5g58980	836015	ceramidase family protein	F:ceramidase activity;P:biological_process unknown;C:endomembrane system;MBFOP	O.I.	C.G.	H.G.
168.2	100.0	190.7	At4g13140		-	-	O.I.	C.G.	H.G.
168.1	100.0	217.9	At5g42220	834227	ubiquitin family protein	F:unknown;P:protein modification process;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
164.5	100.0	348.2	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
160.0	99.9	111.0	At3g42660	823286	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV	O.I.	C.G.	H.G.
159.0	99.9	89.8	At2g01630	814692	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
152.2	99.9	117.0	At2g41990	818799	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
145.7	99.9	211.4	At1g59990	842293	DEAD/DEAH box helicase, putative (RH22)	F:helicase activity, ATP-dependent helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:chloroplast;BMOFPAV	O.I.	C.G.	H.G.
144.4	99.9	354.6	At1g74260	843766	PUR4 (purine biosynthesis 4)	Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.	O.I.	C.G.	H.G.
138.4	99.9	198.5	At5g55130	835604	CNX5 (CO-FACTOR FOR NITRATE, REDUCTASE AND XANTHINE DEHYDROGENASE 5)	putative molybdopterin synthase sulphurylase (cnx5)	O.I.	C.G.	H.G.
128.4	99.9	217.9	At5g55920	835690	nucleolar protein, putative	F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA	O.I.	C.G.	H.G.
122.1	99.9	489.1	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
114.6	99.9	73.7	At2g07170	815286	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMA	O.I.	C.G.	H.G.
110.7	99.9	326.7	At1g12910	837849	ATAN11 (ANTHOCYANIN11)	Encodes a protein with similarity to the petunia WD repeat protein an11.	O.I.	C.G.	H.G.
109.3	99.9	198.8	At5g16120	831469	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFVA	O.I.	C.G.	H.G.
105.6	99.9	228.0	At4g16390	827333	-	F:unknown;P:unknown;C:chloroplast;POFMBA	O.I.	C.G.	H.G.
103.9	99.9	312.6	At4g13780	827012	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	F:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPV	O.I.	C.G.	H.G.
103.9	99.9	222.3	At4g31120	829240	SKB1 (SHK1 BINDING PROTEIN 1)	Involved in vernalization. Required for epigenetic silencing of FLC, and for vernalization-mediated histone modification.	O.I.	C.G.	H.G.
101.9	99.9	79.2	At4g10030	826594	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
99.6	99.9	613.8	At4g15910	827273	ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)	encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.	O.I.	C.G.	H.G.
97.9	99.9	473.6	At1g76670	844000	transporter-related	F:unknown;P:response to nematode;C:membrane;PMFOB	O.I.	C.G.	H.G.
94.2	99.9	179.9	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
93.8	99.9	138.1	At1g79150	844256	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;OMFBPVA	O.I.	C.G.	H.G.
93.3	99.9	65.8	At1g61065	842398	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
89.0	99.9	146.1	At1g53290	841763	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB	O.I.	C.G.	H.G.
88.9	99.9	151.9	At1g72340	843566	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	C.G.	H.G.
88.3	99.9	46.3	At5g66940	836828	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;PO	O.I.	C.G.	H.G.
86.7	99.9	152.1	At3g06310	819805	NADH-ubiquinone oxidoreductase 19 kDa subunit (NDUFA8) family protein	F:NADH dehydrogenase (ubiquinone) activity;P:mitochondrial electron transport, NADH to ubiquinone;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
84.8	99.9	378.5	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
80.8	99.9	30.5	At1g61400	842434	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
80.1	99.9	410.4	At5g03345	831867	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO	O.I.	C.G.	H.G.
79.5	99.9	191.7	At3g02690	821274	integral membrane family protein	F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF	O.I.	C.G.	H.G.
78.7	99.9	110.1	At4g00238	825892	DNA-binding storekeeper protein-related	F:unknown;P:biological_process unknown;C:nucleolus;OMPFBV	O.I.	C.G.	H.G.
76.8	99.9	214.4	At4g38490	830005	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
76.0	99.9	44.3	At4g09520	826536	catalytic/ metal ion binding / phosphoglycerate mutase	F:phosphoglycerate mutase activity, catalytic activity, metal ion binding;P:metabolic process;C:cellular_component unknown;BAOP	O.I.	C.G.	H.G.
75.7	99.9	195.3	At3g59310	825100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA	O.I.	C.G.	H.G.
74.3	99.9	40.1	At5g22810	832344	GDSL-motif lipase, putative	F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
73.7	99.9	81.6	At3g53380	824506	lectin protein kinase family protein	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
73.4	99.9	78.2	At1g73100	843641	SUVH3 (SU(VAR)3-9 HOMOLOG 3)	Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain.	O.I.	C.G.	H.G.
73.4	99.9	49.2	At2g13840	815867	PHP domain-containing protein	F:DNA binding, DNA-directed DNA polymerase activity, catalytic activity;P:DNA replication;C:cellular_component unknown;BOAPF	O.I.	C.G.	H.G.
72.5	99.9	72.3	At3g02000	820200	ROXY1	Roxy1 encodes a glutaredoxin belonging to a subgroup specific to higher plants. It is required for proper petal initiation and organogenesis. It is likely to function in the temporal and spatial expression regulation of AGAMOUS in the first and second whorl. It's function is dependent on the Cysteine 49 residue and its nuclear localization. ROXY1 interacts in vitro and in vivo with members of the TGA family of transcription factors (e.g. TGA2, TGA3, TGA7 and PAN).	O.I.	C.G.	H.G.
71.5	99.9	492.6	At5g13000	831140	ATGSL12 (glucan synthase-like 12)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
70.7	99.9	84.0	At5g57920	835903	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
68.0	99.9	33.8	At1g04150	839249	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFBV	O.I.	C.G.	H.G.
67.2	99.8	73.3	At5g13960	831244	SUVH4 (SU(VAR)3-9 HOMOLOG 4)	Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.	O.I.	C.G.	H.G.
67.0	99.8	70.4	At4g28830	829004	methyltransferase/ nucleic acid binding	F:methyltransferase activity, nucleic acid binding;P:methylation;C:cellular_component unknown;BOAMPF	O.I.	C.G.	H.G.
66.7	99.8	202.7	At1g05940	837104	CAT9 (CATIONIC AMINO ACID TRANSPORTER 9)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters.	O.I.	C.G.	H.G.
66.1	99.8	85.3	At3g26640	822276	LWD2 (LIGHT-REGULATED WD 2)	F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
65.8	99.8	595.7	At2g46540	819266	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, membrane;P	O.I.	C.G.	H.G.
63.6	99.8	745.3	At5g59870	836109	HTA6	Encodes HTA6, a histone H2A protein.	O.I.	C.G.	H.G.
63.3	99.8	43.0	At1g74420	843783	FUT3 (FUCOSYLTRANSFERASE 3)	Predicted fucosyltransferase, based on similarity to FUT1, but not functionally redundantwith FUT1.	O.I.	C.G.	H.G.
63.0	99.8	23.1	At3g28420	822472	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
62.6	99.8	25.4	At3g10200	820182	dehydration-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
62.1	99.8	690.0	At5g64140	836535	RPS28 (RIBOSOMAL PROTEIN S28)	Encodes a putative ribosomal protein S28.	O.I.	C.G.	H.G.
62.1	99.8	54.1	At5g62410	836362	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	SMC2-1 (SMC2)	O.I.	C.G.	H.G.
61.3	99.8	241.6	At4g12060	826814	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	C.G.	H.G.
61.1	99.8	131.4	At5g40960	834098	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
59.4	99.8	128.3	At4g19400	827681	actin binding	F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO	O.I.	C.G.	H.G.
58.7	99.8	193.8	At5g04490	830328	VTE5 (vitamin E pathway gene5)	Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.	O.I.	C.G.	H.G.
57.8	99.8	225.0	At5g15320	831384	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
57.6	99.8	45.4	At2g01580	814687	unknown protein	F:unknown;P:unknown;C:unknown;P	O.I.	C.G.	H.G.
57.2	99.8	62.8	At5g46680	834711	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
57.2	99.8	50.5	At4g23750	828475	CRF2 (CYTOKININ RESPONSE FACTOR 2)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
57.2	99.8	24.6	At2g37880	818364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
54.5	99.8	54.9	At1g48050	841223	KU80	Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.	O.I.	C.G.	H.G.
53.8	99.8	427.6	At5g05370	830419	ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;P	O.I.	C.G.	H.G.
53.7	99.8	52.4	At3g13620	820565	amino acid permease family protein	F:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BMOPFA	O.I.	C.G.	H.G.
52.7	99.8	184.7	At2g30000	817551	-	F:unknown;P:unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
52.5	99.8	27.0	At4g02750	828187	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:mitochondrion;POMFB	O.I.	C.G.	H.G.
52.1	99.8	308.1	At4g28190	828934	ULT1 (ULTRAPETALA1)	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.	O.I.	C.G.	H.G.
51.9	99.8	122.2	At1g79050	844246	DNA repair protein recA	F:nucleoside-triphosphatase activity, DNA-dependent ATPase activity, DNA binding, nucleotide binding, ATP binding;P:DNA repair, SOS response, DNA recombination, DNA metabolic process;C:chloroplast;BOAMPFV	O.I.	C.G.	H.G.
51.9	99.8	73.2	At5g26940	832752	exonuclease family protein	F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular, chloroplast;BOMPVA	O.I.	C.G.	H.G.
51.2	99.8	34.7	At4g27240	828832	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO	O.I.	C.G.	H.G.
49.5	99.8	102.6	At1g10310	837570	short-chain dehydrogenase/reductase (SDR) family protein	encodes a NADPH-dependent pterin aldehyde reductase that accepts pterin aldehyde as well as dihydropterin aldehyde as substrates involved in metabolism and salvage of folate and its derivatives.	O.I.	C.G.	H.G.
49.0	99.8	19.5	At5g18540	831972	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBA	O.I.	C.G.	H.G.
48.8	99.8	68.9	At1g18490	838430	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
48.0	99.8	38.4	At1g30220	839902	INT2 (INOSITOL TRANSPORTER 2)	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOAV	O.I.	C.G.	H.G.
47.4	99.8	42.2	At4g11640	826769	ATSR (ARABIDOPSIS THALIANA SERINE RACEMASE)	Serine racemase, which is a bifunctional PLP-dependent enzyme catalyzing racemization of serine and dehydration of serine to pyruvate in the same way as mammalian serine racemases. similar to mammalian serine racemases.	O.I.	C.G.	H.G.
46.7	99.8	535.4	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
46.3	99.8	449.5	At5g66680	836801	DGL1	Encodes a protein ortholog of human SOT48 or yeast WBP1, an essential protein subunit of the oligosaccharyltransferase (OST) complex, which is responsible for the transfer in the ER of the N-linked glycan precursor onto Asn residues of candidate proteins.	O.I.	C.G.	H.G.
45.3	99.8	72.4	At3g61640	825337	AGP20	F:unknown;P:biological_process unknown;C:anchored to membrane;P	O.I.	C.G.	H.G.
45.3	99.8	44.0	At1g68780	843209	leucine-rich repeat family protein	F:protein binding;P:signal transduction;C:endomembrane system;PMBOFAV	O.I.	C.G.	H.G.
44.9	99.8	31.1	At1g50000	841424	methyltransferase	F:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPM	O.I.	C.G.	H.G.
44.8	99.8	121.6	At3g05600	819726	epoxide hydrolase, putative	F:epoxide hydrolase activity, catalytic activity;P:unknown;C:unknown;BOMPFA	O.I.	C.G.	H.G.
44.3	99.8	35.1	At4g18465	827579	RNA helicase, putative	F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA	O.I.	C.G.	H.G.
43.8	99.8	40.8	At5g20580	832180	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFBO	O.I.	C.G.	H.G.
43.6	99.8	24.2	At3g19300	821464	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
42.1	99.8	15.5	At5g11320	831003	YUC4 (YUCCA4)	Belongs to the YUC gene family. Encodes a predicted flavin monooxygenase YUC4 involved in auxin biosynthesis and plant development.	O.I.	C.G.	H.G.

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GSM ID	GSM133763
Assay name	Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133763 Assay name Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133763

Assay name Lindsey_1-15_torpedo-cotyledon_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues