CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133762

Assay name Lindsey_1-14_torpedo-root_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
4393.8 100.0 208.4 At5g34460 833360 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
2853.3 100.0 3467.5 At1g06530 837164 myosin heavy chain-related F:unknown;P:unknown;C:mitochondrion, plasma membrane, plastid;MOBFPAV O.I. C.G. H.G.
2094.5 100.0 56.5 At3g24130 821999 pectinesterase family protein F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAMO O.I. C.G. H.G.
1945.5 100.0 162.8 At1g45090 841076 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1496.5 100.0 96.8 At2g16410 816139 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1494.8 100.0 57.9 At5g53410 835422 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1252.8 100.0 80.0 At3g13170 820506 ATSPO11-1 Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase. O.I. C.G. H.G.
1190.4 100.0 55.9 At5g11290 831000 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1085.5 100.0 47.1 At1g63280 842634 serpin-related / serine protease inhibitor-related F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:unknown;MPBOAV O.I. C.G. H.G.
1078.3 100.0 17.4 At4g07550 3770366 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
1037.7 100.0 110.5 At3g43320 823411 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
966.6 100.0 62.5 At3g14030 820617 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
923.0 100.0 48.4 At3g42260 3769437 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
911.8 100.0 40.7 At2g05930 3767925 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
870.4 100.0 238.4 At1g32290 840121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
850.6 100.0 109.6 At5g04610 830338 spermidine synthase-related / putrescine aminopropyltransferase-related F:catalytic activity;P:unknown;C:unknown;BPMOFA O.I. C.G. H.G.
844.8 100.0 59.1 At1g33920 840289 ATPP2-A4 (Phloem protein 2-A4) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
830.5 100.0 153.6 At2g23690 816900 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO O.I. C.G. H.G.
825.1 100.0 27.3 At1g41900 840803 transposable element gene pseudogene of myosin heavy chain-related O.I. C.G. H.G.
815.1 100.0 54.5 At1g15190 838085 - F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
793.0 100.0 112.4 At1g66440 842962 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
765.6 100.0 87.7 At1g23420 838950 INO (INNER NO OUTER) Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule. O.I. C.G. H.G.
732.2 100.0 74.8 At5g48670 834925 AGL80 (AGAMOUS-LIKE 80) AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function. O.I. C.G. H.G.
713.5 100.0 91.7 At3g18840 821417 - - O.I. C.G. H.G.
710.2 100.0 75.0 At2g13510 815837 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
706.8 100.0 78.6 At4g29250 829046 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
692.0 100.0 65.9 At4g04480 825778 - F:unknown;P:unknown;C:chloroplast;P O.I. C.G. H.G.
682.4 100.0 60.9 At1g11470 837689 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
658.4 100.0 116.6 At3g52830 824449 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
655.8 100.0 103.6 At1g31100 3766864 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
641.6 100.0 35.6 At3g09590 820116 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
636.9 100.0 47.3 At3g60060 825176 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFB O.I. C.G. H.G.
625.6 100.0 58.1 At1g76250 843958 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;POM O.I. C.G. H.G.
625.4 100.0 24.0 At2g18320 816347 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
619.9 100.0 78.1 At5g36870 833654 ATGSL09 (glucan synthase-like 9) encodes a gene similar to callose synthase O.I. C.G. H.G.
619.9 100.0 48.6 At3g31320 822882 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
615.5 100.0 58.0 At1g36970 840606 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
614.4 100.0 45.9 At3g46350 823781 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
605.5 100.0 123.7 At1g48360 841256 hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;BFMOP O.I. C.G. H.G.
604.8 100.0 45.3 At3g02100 820287 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF O.I. C.G. H.G.
604.1 100.0 129.7 At4g16570 827358 PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7) F:methyltransferase activity;P:protein amino acid methylation;C:chloroplast;MFOPBA O.I. C.G. H.G.
601.4 100.0 29.9 At1g34080 3766908 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
600.2 100.0 34.8 At1g70040 843341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
596.8 100.0 30.2 At1g60350 842330 anac024 (Arabidopsis NAC domain containing protein 24) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
582.9 100.0 66.9 At2g24660 3768225 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
581.2 100.0 55.1 At2g31460 817704 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
575.1 100.0 49.0 At3g25280 822122 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO O.I. C.G. H.G.
569.7 100.0 36.7 At3g30220 822722 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
569.6 100.0 74.1 At1g35617 840460 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF O.I. C.G. H.G.
562.4 100.0 49.7 At1g76430 843976 phosphate transporter family protein F:phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;BFMPOA O.I. C.G. H.G.
561.9 100.0 39.8 At5g28860 833005 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
557.4 100.0 63.4 At5g46100 834651 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA O.I. C.G. H.G.
557.2 100.0 34.0 At1g50530 841475 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
557.1 100.0 67.7 At2g14390 815926 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF O.I. C.G. H.G.
554.3 100.0 43.8 At5g63070 836427 40S ribosomal protein S15, putative F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;BOPMAF O.I. C.G. H.G.
553.6 100.0 59.2 At3g42920 823343 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
550.6 100.0 53.1 At1g31240 840012 DNA binding F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
536.2 100.0 33.1 At5g02730 831820 allergen V5/Tpx-1-related family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB O.I. C.G. H.G.
533.0 100.0 50.8 At2g41930 818793 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
529.8 100.0 53.7 At3g45690 823711 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF O.I. C.G. H.G.
521.2 100.0 37.8 At1g15900 838160 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
520.9 100.0 43.5 At3g06090 819782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
508.9 100.0 56.8 At2g35590 3768541 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
508.0 100.0 79.4 At2g34555 818019 ATGA2OX3 (gibberellin 2-oxidase 3) F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM O.I. C.G. H.G.
504.4 100.0 42.3 At1g41810 840789 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
499.0 100.0 33.8 At5g39390 833935 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
497.2 100.0 25.0 At2g17860 816296 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
494.7 100.0 72.3 At5g02980 831482 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOA O.I. C.G. H.G.
490.9 100.0 71.6 At5g24560 832527 AtPP2-B12 (Phloem protein 2-B12) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
484.9 100.0 45.7 At3g28170 822443 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
481.0 100.0 45.8 At4g19320 827673 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
480.4 100.0 46.1 At4g24860 828589 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV O.I. C.G. H.G.
479.9 100.0 45.4 At3g25960 822193 pyruvate kinase, putative F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA O.I. C.G. H.G.
475.6 100.0 61.8 At2g37780 818355 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
473.3 100.0 56.2 At1g21870 838789 glucose-6-phosphate/phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOB O.I. C.G. H.G.
471.4 100.0 73.8 At2g32370 817798 HDG3 (HOMEODOMAIN GLABROUS 3) Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development. O.I. C.G. H.G.
468.3 100.0 49.2 At5g46360 834679 KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3) Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo. O.I. C.G. H.G.
466.9 100.0 42.9 At3g43660 823468 nodulin, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA O.I. C.G. H.G.
466.1 100.0 47.4 At5g41640 834166 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
461.6 100.0 55.7 At3g49770 824139 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
460.1 100.0 74.0 At5g40820 834082 ATRAD3 Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al. O.I. C.G. H.G.
459.7 100.0 39.2 At2g35075 818073 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
458.5 100.0 66.8 At1g79960 844336 OFP14 (OVATE FAMILY PROTEIN 14) F:unknown;P:biological_process unknown;C:unknown;PFOM O.I. C.G. H.G.
456.7 100.0 71.8 At1g42365 3767242 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
455.9 100.0 58.3 At5g11570 831029 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF O.I. C.G. H.G.
455.3 100.0 55.3 At2g15720 3767805 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
453.7 100.0 81.8 At1g27080 839597 NRT1.6 (NITRATE TRANSPORTER 1.6) Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion. O.I. C.G. H.G.
452.4 100.0 59.0 At1g50470 841469 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
450.9 100.0 42.7 At4g24600 828562 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
447.2 100.0 15.7 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
443.2 100.0 49.4 At2g28580 817406 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
442.5 100.0 46.9 At1g18350 838416 ATMKK7 MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance. O.I. C.G. H.G.
442.2 100.0 53.6 At1g24640 3766791 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
441.6 100.0 62.2 At4g17580 827475 Bax inhibitor-1 family protein / BI-1 family protein F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV O.I. C.G. H.G.
441.6 100.0 35.8 At3g44980 823633 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
440.8 100.0 38.7 At2g19290 816446 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
438.7 100.0 24.3 At5g05050 830387 peptidase C1A papain family protein F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMO O.I. C.G. H.G.
437.4 100.0 31.8 At4g18420 827572 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
436.2 100.0 62.4 At3g08810 820028 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
435.1 100.0 63.3 At3g46360 823782 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
4393.8	100.0	208.4	At5g34460	833360	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
2853.3	100.0	3467.5	At1g06530	837164	myosin heavy chain-related	F:unknown;P:unknown;C:mitochondrion, plasma membrane, plastid;MOBFPAV	O.I.	C.G.	H.G.
2094.5	100.0	56.5	At3g24130	821999	pectinesterase family protein	F:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFAMO	O.I.	C.G.	H.G.
1945.5	100.0	162.8	At1g45090	841076	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1496.5	100.0	96.8	At2g16410	816139	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1494.8	100.0	57.9	At5g53410	835422	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1252.8	100.0	80.0	At3g13170	820506	ATSPO11-1	Encodes AtSPO11-1, one of the three Arabidopsis homologues of the archaeal DNA topoisomerase VIA subunit (topo VIA). Required for meiotic recombination. AtSPO11-1 and AtSPO11-2 have overlapping functions (i.e. both required for meiotic recombination) whereas AtSPO11-3 functions in DNA replication. AtSPO11-1 accumulates in foci in early G2. At 1 h post-S phase, no foci are observed, but by 3 h a majority (80%) of meiocytes at this time point contain >50 foci. However, by 5 h, AtSPO11-1 foci are no longer detectable. This suggests that the protein undergoes a rapid cycle of accumulation and disappearance in meiocytes over a period of between 1 and 5 h post-S phase.	O.I.	C.G.	H.G.
1190.4	100.0	55.9	At5g11290	831000	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1085.5	100.0	47.1	At1g63280	842634	serpin-related / serine protease inhibitor-related	F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:unknown;MPBOAV	O.I.	C.G.	H.G.
1078.3	100.0	17.4	At4g07550	3770366	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
1037.7	100.0	110.5	At3g43320	823411	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
966.6	100.0	62.5	At3g14030	820617	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
923.0	100.0	48.4	At3g42260	3769437	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
911.8	100.0	40.7	At2g05930	3767925	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
870.4	100.0	238.4	At1g32290	840121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
850.6	100.0	109.6	At5g04610	830338	spermidine synthase-related / putrescine aminopropyltransferase-related	F:catalytic activity;P:unknown;C:unknown;BPMOFA	O.I.	C.G.	H.G.
844.8	100.0	59.1	At1g33920	840289	ATPP2-A4 (Phloem protein 2-A4)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
830.5	100.0	153.6	At2g23690	816900	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
825.1	100.0	27.3	At1g41900	840803	transposable element gene	pseudogene of myosin heavy chain-related	O.I.	C.G.	H.G.
815.1	100.0	54.5	At1g15190	838085	-	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
793.0	100.0	112.4	At1g66440	842962	DC1 domain-containing protein	F:unknown;P:unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
765.6	100.0	87.7	At1g23420	838950	INO (INNER NO OUTER)	Essential for formation and asymmetric growth of the ovule outer integument. Member of the YABBY protein family of putative transcription factors that contain apparent Cys(2)-Cys(2) zinc-finger domains and regions of similarity to the high mobility group (HMG) transcription factors. INO may be required for polarity determination in the central part of the ovule.	O.I.	C.G.	H.G.
732.2	100.0	74.8	At5g48670	834925	AGL80 (AGAMOUS-LIKE 80)	AGL80 is a member of the MADS box family of genes. AGL80 functions as a transcription factor within the central cell gene regulatory network and controls the expression of downstream genes required for central cell development and function.	O.I.	C.G.	H.G.
713.5	100.0	91.7	At3g18840	821417	-	-	O.I.	C.G.	H.G.
710.2	100.0	75.0	At2g13510	815837	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
706.8	100.0	78.6	At4g29250	829046	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
692.0	100.0	65.9	At4g04480	825778	-	F:unknown;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
682.4	100.0	60.9	At1g11470	837689	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
658.4	100.0	116.6	At3g52830	824449	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
655.8	100.0	103.6	At1g31100	3766864	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
641.6	100.0	35.6	At3g09590	820116	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
636.9	100.0	47.3	At3g60060	825176	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMFB	O.I.	C.G.	H.G.
625.6	100.0	58.1	At1g76250	843958	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;POM	O.I.	C.G.	H.G.
625.4	100.0	24.0	At2g18320	816347	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
619.9	100.0	78.1	At5g36870	833654	ATGSL09 (glucan synthase-like 9)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
619.9	100.0	48.6	At3g31320	822882	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
615.5	100.0	58.0	At1g36970	840606	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
614.4	100.0	45.9	At3g46350	823781	leucine-rich repeat protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
605.5	100.0	123.7	At1g48360	841256	hydrolase, acting on acid anhydrides, in phosphorus-containing anhydrides / nucleic acid binding / zinc ion binding	F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, zinc ion binding, nucleic acid binding;P:biological_process unknown;C:mitochondrion;BFMOP	O.I.	C.G.	H.G.
604.8	100.0	45.3	At3g02100	820287	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOF	O.I.	C.G.	H.G.
604.1	100.0	129.7	At4g16570	827358	PRMT7 (PROTEIN ARGININE METHYLTRANSFERASE 7)	F:methyltransferase activity;P:protein amino acid methylation;C:chloroplast;MFOPBA	O.I.	C.G.	H.G.
601.4	100.0	29.9	At1g34080	3766908	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
600.2	100.0	34.8	At1g70040	843341	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
596.8	100.0	30.2	At1g60350	842330	anac024 (Arabidopsis NAC domain containing protein 24)	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
582.9	100.0	66.9	At2g24660	3768225	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
581.2	100.0	55.1	At2g31460	817704	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
575.1	100.0	49.0	At3g25280	822122	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMFO	O.I.	C.G.	H.G.
569.7	100.0	36.7	At3g30220	822722	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
569.6	100.0	74.1	At1g35617	840460	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVF	O.I.	C.G.	H.G.
562.4	100.0	49.7	At1g76430	843976	phosphate transporter family protein	F:phosphate transmembrane transporter activity, carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport;C:membrane;BFMPOA	O.I.	C.G.	H.G.
561.9	100.0	39.8	At5g28860	833005	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
557.4	100.0	63.4	At5g46100	834651	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA	O.I.	C.G.	H.G.
557.2	100.0	34.0	At1g50530	841475	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
557.1	100.0	67.7	At2g14390	815926	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPF	O.I.	C.G.	H.G.
554.3	100.0	43.8	At5g63070	836427	40S ribosomal protein S15, putative	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome;BOPMAF	O.I.	C.G.	H.G.
553.6	100.0	59.2	At3g42920	823343	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
550.6	100.0	53.1	At1g31240	840012	DNA binding	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
536.2	100.0	33.1	At5g02730	831820	allergen V5/Tpx-1-related family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOB	O.I.	C.G.	H.G.
533.0	100.0	50.8	At2g41930	818793	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
529.8	100.0	53.7	At3g45690	823711	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF	O.I.	C.G.	H.G.
521.2	100.0	37.8	At1g15900	838160	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
520.9	100.0	43.5	At3g06090	819782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
508.9	100.0	56.8	At2g35590	3768541	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
508.0	100.0	79.4	At2g34555	818019	ATGA2OX3 (gibberellin 2-oxidase 3)	F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
504.4	100.0	42.3	At1g41810	840789	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
499.0	100.0	33.8	At5g39390	833935	leucine-rich repeat family protein / protein kinase family protein	F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
497.2	100.0	25.0	At2g17860	816296	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
494.7	100.0	72.3	At5g02980	831482	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBFOA	O.I.	C.G.	H.G.
490.9	100.0	71.6	At5g24560	832527	AtPP2-B12 (Phloem protein 2-B12)	F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
484.9	100.0	45.7	At3g28170	822443	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
481.0	100.0	45.8	At4g19320	827673	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
480.4	100.0	46.1	At4g24860	828589	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
479.9	100.0	45.4	At3g25960	822193	pyruvate kinase, putative	F:pyruvate kinase activity, magnesium ion binding, potassium ion binding, catalytic activity;P:glycolysis;C:unknown;BOMPFA	O.I.	C.G.	H.G.
475.6	100.0	61.8	At2g37780	818355	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
473.3	100.0	56.2	At1g21870	838789	glucose-6-phosphate/phosphate translocator-related	F:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOB	O.I.	C.G.	H.G.
471.4	100.0	73.8	At2g32370	817798	HDG3 (HOMEODOMAIN GLABROUS 3)	Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family. Together with ATML1 and PDF2, it is involved in cotyledon development.	O.I.	C.G.	H.G.
468.3	100.0	49.2	At5g46360	834679	KCO3 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3)	Encodes AtKCO3, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtKCO3 is targeted to the vacuolar membrane. Forms homomeric ion channels in vivo.	O.I.	C.G.	H.G.
466.9	100.0	42.9	At3g43660	823468	nodulin, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPFA	O.I.	C.G.	H.G.
466.1	100.0	47.4	At5g41640	834166	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
461.6	100.0	55.7	At3g49770	824139	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
460.1	100.0	74.0	At5g40820	834082	ATRAD3	Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.	O.I.	C.G.	H.G.
459.7	100.0	39.2	At2g35075	818073	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
458.5	100.0	66.8	At1g79960	844336	OFP14 (OVATE FAMILY PROTEIN 14)	F:unknown;P:biological_process unknown;C:unknown;PFOM	O.I.	C.G.	H.G.
456.7	100.0	71.8	At1g42365	3767242	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
455.9	100.0	58.3	At5g11570	831029	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport;C:membrane;PBMOF	O.I.	C.G.	H.G.
455.3	100.0	55.3	At2g15720	3767805	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
453.7	100.0	81.8	At1g27080	839597	NRT1.6 (NITRATE TRANSPORTER 1.6)	Encodes a protein with low-affinity nitrate transporter activity that is expressed in the vascular tissue of the funiculus and the silique. This plasma membrane-localized enzyme is predicted to have 12 transmembrane domains. Plants lacking NRT1.6 have reduced levels of nitrate in their seeds and have increased levels of early embryonic developmental defects and seed abortion.	O.I.	C.G.	H.G.
452.4	100.0	59.0	At1g50470	841469	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
450.9	100.0	42.7	At4g24600	828562	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
447.2	100.0	15.7	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
443.2	100.0	49.4	At2g28580	817406	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
442.5	100.0	46.9	At1g18350	838416	ATMKK7	MAP kinase kinase7. Member of plant mitogen-activated protein kinase kinase group D. Negative regulator of polar auxin transport. Overexpression leads to activation of basal and systemic acquired resistance.	O.I.	C.G.	H.G.
442.2	100.0	53.6	At1g24640	3766791	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
441.6	100.0	62.2	At4g17580	827475	Bax inhibitor-1 family protein / BI-1 family protein	F:molecular_function unknown;P:negative regulation of apoptosis, regulation of apoptosis, apoptosis;C:integral to membrane;BMOFPV	O.I.	C.G.	H.G.
441.6	100.0	35.8	At3g44980	823633	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
440.8	100.0	38.7	At2g19290	816446	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
438.7	100.0	24.3	At5g05050	830387	peptidase C1A papain family protein	F:cysteine-type peptidase activity;P:proteolysis;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
437.4	100.0	31.8	At4g18420	827572	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
436.2	100.0	62.4	At3g08810	820028	kelch repeat-containing F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
435.1	100.0	63.3	At3g46360	823782	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.

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GSM ID	GSM133762
Assay name	Lindsey_1-14_torpedo-root_Rep1_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133762 Assay name Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133762

Assay name Lindsey_1-14_torpedo-root_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues