Microarray experiments to specifically-expressed genes

GSM ID GSM133761
Assay name Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2130.5100.0572.7At1g50510841473indigoidine synthase A family proteinF:unknown;P:biological_process unknown;C:plasma membrane;OBFMPO.I.C.G.H.G.
1527.8100.0285.4At5g01780831672oxidoreductaseF:oxidoreductase activity;P:unknown;C:cellular_component unknown;BOMPFO.I.C.G.H.G.
1317.3100.0436.6At5g45590834597unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOO.I.C.G.H.G.
1207.0100.0295.6At5g39860833982PRE1 (PACLOBUTRAZOL RESISTANCE1)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
1150.4100.0326.4At1g24340839050emb2421 (embryo defective 2421)F:oxidoreductase activity, monooxygenase activity;P:embryonic development ending in seed dormancy;C:unknown;BOFPMO.I.C.G.H.G.
1104.5100.0148.4At3g62920825467unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
823.4100.071.1At3g26920822308-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFO.I.C.G.H.G.
766.8100.0595.4At3g02690821274integral membrane family proteinF:unknown;P:unknown;C:chloroplast, membrane;BOAPMFO.I.C.G.H.G.
745.0100.0578.3At3g18940821426clast3-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOAO.I.C.G.H.G.
724.0100.0405.8At2g32910817853-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
603.6100.0278.8At4g19185827657integral membrane family proteinF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
563.3100.0283.6At4g16430827337basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
495.3100.0656.7At1g74260843766PUR4 (purine biosynthesis 4)Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.O.I.C.G.H.G.
495.3100.0312.5At5g09270830786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
455.6100.0397.2At3g49670824129BAM2 (BARELY ANY MERISTEM 2)Encodes a CLAVATA1-related receptor kinase-like protein required for both shoot and flower meristem function. Very similar to BAM1,with more than 85% a.a. identity. It has a broad expression pattern and is involved in vascular strand development in the leaf, control of leaf shape, size and symmetry, male gametophyte development and ovule specification and function. Anthers of double mutants (bam1bam2) appeared abnormal at a very early stage and lack the endothecium, middle, and tapetum layers. Further analyses revealed that cells interior to the epidermis (in anther tissue) acquire some characteristics of pollen mother cells (PMCs), suggesting defects in cell fate specification. The pollen mother-like cells degenerate before the completion of meiosis, suggesting that these cells are defective. In addition, the BAM2 expression pattern supports both an early role in promoting somatic cell fates and a subsequent function in the PMCs.O.I.C.G.H.G.
448.4100.0129.5At5g07840830677ankyrin repeat family proteinF:protein binding;P:biological_process unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
402.0100.0385.5At5g55920835690nucleolar protein, putativeF:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVAO.I.C.G.H.G.
364.6100.0360.5At2g01090814638ubiquinol-cytochrome C reductase complex 7.8 kDa protein, putative / mitochondrial hinge protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrial respiratory chain complex III;POMFO.I.C.G.H.G.
359.1100.0419.0At1g23220838931dynein light chain type 1 family proteinF:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPFO.I.C.G.H.G.
341.7100.087.8At4g35620829714CYCB2F:cyclin-dependent protein kinase regulator activity;P:regulation of cell cycle;C:nucleus;MPOFVBO.I.C.G.H.G.
321.0100.0422.6At1g43130840912LCV2 (LIKE COV 2)F:molecular_function unknown;P:stem vascular tissue pattern formation;C:cellular_component unknown;OBPAO.I.C.G.H.G.
311.6100.0178.0At3g21110821663PUR7 (PURIN 7)5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.O.I.C.G.H.G.
298.5100.091.3At5g06590830547unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
295.9100.0214.9At5g04900830372short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAVO.I.C.G.H.G.
286.3100.0177.1At1g73177843651BNS (BONSAI)The BONSAI gene encodes a protein with similarity to the APC13 component of the Anaphase Promoting Complex. Plants with lowered level of BONSAI expression, resulting from hypomethylation, RNAi knock-down, or a T-DNA insertion show some abnormalities in shoot and inflorescence development.O.I.C.G.H.G.
283.2100.0327.8At1g65580842869FRA3 (FRAGILE FIBER3)F:inositol or phosphatidylinositol phosphatase activity;P:unknown;C:unknown;MFPOBO.I.C.G.H.G.
250.3100.077.9At5g66940836828Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POO.I.C.G.H.G.
249.4100.0222.0At5g27400832799unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
249.3100.0168.9At4g16444827341unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPO.I.C.G.H.G.
248.4100.0231.5At1g80680844407SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3)Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.O.I.C.G.H.G.
232.9100.0152.5At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
231.4100.0476.3At3g63000825475NPL41 (NPL4-LIKE PROTEIN 1)F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
229.9100.0317.3At1g28150839709unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plastoglobule;BPO.I.C.G.H.G.
225.3100.0328.9At5g53650835446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
220.9100.0134.1At3g08900820039RGP3 (REVERSIBLY GLYCOSYLATED POLYPEPTIDE 3)Encodes a reversible autoglycosylated protein peripherally associated with cell membranes. Highly expressed in roots ans suspension-cultured cells.O.I.C.G.H.G.
219.9100.0243.5At1g13690837930ATE1AtE1 - stimulates the ATPase activity of DnaK/DnaJO.I.C.G.H.G.
216.9100.049.9At2g14860815975peroxisomal membrane protein 22 kDa, putativeF:unknown;P:biological_process unknown;C:integral to membrane, peroxisomal membrane;MFPOVO.I.C.G.H.G.
211.1100.0118.1At4g21100827857DDB1B (Damaged DNA Binding Protein 1 B)One of two closely related genes similar to a damaged DNA binding protein originally described in mammals. May form a complex with DET1 to regulate photomorphogenesis. Loss of function mutations are lethal. The DDB1b protein binds with a number of DWD-containing proteins and may form part of a CUL4-based E3 ubiquitin ligase.O.I.C.G.H.G.
209.0100.0286.5At1g29940839872NRPA2Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).O.I.C.G.H.G.
197.6100.0501.2At1g75330843869OTC (ORNITHINE CARBAMOYLTRANSFERASE)F:amino acid binding, ornithine carbamoyltransferase activity, carboxyl- or carbamoyltransferase activity;P:amino acid metabolic process;C:chloroplast, chloroplast stroma;BOAFMPVO.I.C.G.H.G.
195.0100.0556.3At2g40060818594protein binding / structural moleculeF:protein binding, structural molecule activity;P:intracellular protein transport, vesicle-mediated transport;C:plasma membrane, chloroplast envelope;MOPFBAVO.I.C.G.H.G.
191.8100.0264.8At1g03210838493phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
189.7100.057.0At1g79420844280unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
187.7100.098.7At4g27730828887OPT6 (OLIGOPEPTIDE TRANSPORTER 1)oligopeptide transporterO.I.C.G.H.G.
181.0100.0213.5At4g28480828965DNAJ heat shock family proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAVO.I.C.G.H.G.
178.4100.0220.7At1g44750841039ATPUP11Member of a family of proteins related to PUP1, a purine transporter. May be involved in the transport of purine and purine derivatives such as cytokinins, across the plasma membrane.O.I.C.G.H.G.
167.9100.0375.8At2g20580816580RPN1A (26S PROTEASOME REGULATORY SUBUNIT S2 1A)encoding the RPN subunits of the 26S proteasomeO.I.C.G.H.G.
160.599.982.8At1g68780843209leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
158.999.9273.9At5g60960836217pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMO.I.C.G.H.G.
157.699.972.6At5g397908339755'-AMP-activated protein kinase beta-1 subunit-relatedEncodes a chloroplast localized protein with starch binding activity that may be involved in carbohydrate metabolism.O.I.C.G.H.G.
153.999.9120.5At2g45340819142leucine-rich repeat transmembrane protein kinase, putativeF:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
148.999.9602.8At4g21110827859G10 family proteinF:unknown;P:biological_process unknown;C:nucleus;MFOPO.I.C.G.H.G.
148.199.9748.7At4g15910827273ATDI21 (ARABIDOPSIS THALIANA DROUGHT-INDUCED 21)encodes a gene whose transcript level in root and leaves increases to progressive drought stress. The transcript level is also affected by changes of endogenous or exogenous abscisic acid level. It appears to be a member of plant-specific gene family that includes late embryo-abundant and zinc- IAA-induced proteins in other plants.O.I.C.G.H.G.
145.899.9148.6At1g79470844285inosine-5'-monophosphate dehydrogenaseF:IMP dehydrogenase activity, catalytic activity;P:GMP biosynthetic process, metabolic process;C:unknown;OBMFAPVO.I.C.G.H.G.
142.199.9339.1At5g54580835546RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:unknown;MPFOBAO.I.C.G.H.G.
140.399.986.8At3g04860819646unknown proteinF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
130.899.9285.6At1g22270838833unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
126.099.9153.0At5g62600836381transportin-SR-relatedF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFPOBO.I.C.G.H.G.
117.999.959.1At1g02390839558GPAT2 (GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE 2)Encodes a member of a family of proteins with glycerol-3-phosphate acyltransferase activity.O.I.C.G.H.G.
117.599.9372.2At2g18710816386SCY1 (SecY Homolog 1)F:P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein secretion, protein transport;C:chloroplast, membrane;OBPAMFO.I.C.G.H.G.
114.999.9303.1At3g06320819806ribosomal protein L33 family proteinF:structural constituent of ribosome;P:translation;C:ribosome, intracellular, large ribosomal subunit;BOPMFO.I.C.G.H.G.
113.999.9213.4At4g37040829858MAP1D (METHIONINE AMINOPEPTIDASE 1D)encodes a methionine aminopeptidaseO.I.C.G.H.G.
107.299.9107.7At2g17410816247ARID/BRIGHT DNA-binding domain-containing proteinF:transcription factor activity;P:regulation of transcription;C:intracellular;MOBFPVAO.I.C.G.H.G.
103.999.9220.3At3g55040824670GSTL2F:unknown;P:unknown;C:chloroplast, chloroplast stroma;PBMOFO.I.C.G.H.G.
103.999.9132.5At3g14190820636unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
103.399.957.1At5g18440831962unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPVO.I.C.G.H.G.
102.599.969.6At1g30600839940subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:plant-type cell wall;BPOFAMO.I.C.G.H.G.
101.299.9179.8At3g16100820855ATRABG3C (ARABIDOPSIS RAB GTPASE HOMOLOG G3C)F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:plasma membrane, nucleus;MOFPBVAO.I.C.G.H.G.
100.799.967.4At5g03190831909CPUORF47 (CONSERVED PEPTIDE UPSTREAM OPEN READING FRAME 47)F:molecular_function unknown;P:biological_process unknown;C:unknown;POBO.I.C.G.H.G.
100.699.9584.0At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
96.499.930.3At1g68510843180LBD42 (LOB DOMAIN-CONTAINING PROTEIN 42)F:unknown;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
96.199.9330.6At2g42570818857unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
91.799.9351.5At2g32520817813dienelactone hydrolase family proteinF:hydrolase activity;P:biological_process unknown;C:chloroplast;BOMPAFO.I.C.G.H.G.
90.499.9485.3At2g20860816619LIP1 (LIPOIC ACID SYNTHASE 1)LIP1,Lipoic acid synthase,O.I.C.G.H.G.
88.099.976.7At1g32310840123unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
83.199.9230.6At5g04490830328VTE5 (vitamin E pathway gene5)Encodes a protein with phytol kinase activity involved in tocopherol biosynthesis.O.I.C.G.H.G.
81.599.9324.8At3g23940821977dehydratase familyF:catalytic activity, dihydroxy-acid dehydratase activity;P:branched chain family amino acid biosynthetic process, isoleucine biosynthetic process, metabolic process, valine biosynthetic process;C:chloroplast stroma, chloroplast;OBFAPMO.I.C.G.H.G.
79.599.961.2At2g20310816550RIN13 (RPM1 INTERACTING PROTEIN 13)Encodes RPM1 Interacting Protein 13 (RIN13), a resistance protein interactor shown to positively enhance resistance function of RPM1.O.I.C.G.H.G.
77.799.983.0At5g62800836401seven in absentia (SINA) family proteinF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFO.I.C.G.H.G.
76.899.939.2At2g17650816272AMP-dependent synthetase and ligase family proteinF:catalytic activity;P:metabolic process;C:mitochondrion;BOMFPAVO.I.C.G.H.G.
76.199.9163.6At5g05740830458EGY2S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.O.I.C.G.H.G.
75.699.9101.7At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
70.899.974.8At3g12680820448HUA1 (ENHANCER OF AG-4 1)Member of the floral homeotic AGAMOUS pathway.O.I.C.G.H.G.
69.699.9100.2At1g47240841127NRAMP2Member of the NRAMP2 gene family of metal ion transporters.O.I.C.G.H.G.
66.599.8241.3At5g15320831384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
64.799.8324.9At5g14800831332P5CR (PYRROLINE-5- CARBOXYLATE (P5C) REDUCTASE)Delta 1-pyrroline-5-carboxylate reductase, catalyzes the final step in proline biosynthesis from glutamate and ornithine.In situ hybridization indicated that under normal growth conditions, the highest concentration of P5CR transcripts occurs in the cortical parenchyma, phloem, vascular cambium and pith parenchyma in the vicinity of the protoxylem. Single gene in Arabidopsis.O.I.C.G.H.G.
64.699.8103.6At1g02860839559NLA (nitrogen limitation adaptation)Encodes a likely ubiquitin E3 ligase with RING and SPX domains that is involved in mediating immune responses.O.I.C.G.H.G.
60.599.8306.1At1g54690841910GAMMA-H2AX (GAMMA HISTONE VARIANT H2AX)Encodes HTA3, a histone H2A protein. H2AX is a meiosis-specific isoform of histone H2A. Upon DSB formation, rapid accumulation of phosphorylated H2AX (γ-H2AX) occurs around the break site. H2AX foci accumulate in early G2. Immunolocalization studies in spread preparations of wild-type meiocytes at G2/early leptotene revealed the accumulation of numerous rather diffuse γ-H2AX foci throughout the chromatin. However, their accumulation is not contemporaneous with that of AtSPO11-1. At 3 h post-S, no γ-H2AX foci are detected. During the 3- to 5-h window when AtSPO11-1 foci rapidly disappear, there is an equally swift accumulation of γ-H2AX to a maximum of >50 diffuse foci. The level of γH2AX then remains constant for a further 13 h before undergoing a gradual decrease to 1020 foci in the 18- to 24-h post-S period. By 30 h the foci have disappeared from the chromatin.O.I.C.G.H.G.
59.199.852.9At2g25920817133-F:molecular_function unknown;P:biological_process unknown;C:unknown;BPOFMO.I.C.G.H.G.
58.499.8201.6At2g38810818463HTA8 (HISTONE H2A 8)Encodes HTA8, a histone H2A protein.O.I.C.G.H.G.
56.399.833.8At4g33160829453ubiquitin-protein ligaseF:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PO.I.C.G.H.G.
56.099.8192.4At1g02160839554-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMO.I.C.G.H.G.
54.799.8431.4At5g05370830419ubiquinol-cytochrome C reductase complex ubiquinone-binding protein, putative / ubiquinol-cytochrome C reductase complex 8.2 kDa protein, putativeF:ubiquinol-cytochrome-c reductase activity;P:unknown;C:mitochondrial respiratory chain complex III;PO.I.C.G.H.G.
53.999.8289.2At1g17200838291integral membrane family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
53.799.8139.2At2g27960817340CKS1 (CYCLIN-DEPENDENT KINASE-SUBUNIT 1)catalytic subunit of cyclin dependent kinase 1. physically interact with cyclin-dependent kinases (CDKs) and play an essential, but yet not entirely resolved, role in the regulation of the cell cycleO.I.C.G.H.G.
53.199.8398.2At1g69740843310HEMB1Encodes a putative 5-aminolevulinate dehydratase involved in chlorophyll biosynthesis.O.I.C.G.H.G.
51.799.874.0At5g18410831959PIR121distorted trichomes and exhibits a diffuse actin cytoskeletonO.I.C.G.H.G.
51.599.8130.7At4g24440828546transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)F:RNA polymerase II transcription factor activity;P:transcription initiation from RNA polymerase II promoter;C:transcription factor TFIIA complex;MPFOO.I.C.G.H.G.
50.399.8105.7At4g28210828936emb1923 (embryo defective 1923)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast;PO.I.C.G.H.G.
49.899.8279.8At1g50430841465DWF5 (DWARF 5)Mutants are defective in Brassinosteroid biosynthesis (delta7-sterol-C7 reduction step) and have a dwarf phenotype.O.I.C.G.H.G.



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