CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133760

Assay name Lindsey_1-12_heart-stage-root_Rep3_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
4247.0 100.0 308.0 At5g14070 831256 ROXY2 Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen. O.I. C.G. H.G.
4136.0 100.0 611.2 At3g53380 824506 lectin protein kinase family protein F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
3858.2 100.0 216.1 At1g64260 842731 zinc finger protein-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
2318.7 100.0 339.5 At2g37560 818332 ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2) Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits. O.I. C.G. H.G.
2218.8 100.0 234.2 At1g30660 839946 nucleic acid binding F:nucleic acid binding;P:DNA modification, DNA metabolic process;C:unknown;OBVPA O.I. C.G. H.G.
1996.5 100.0 196.5 At1g63210 842626 RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA O.I. C.G. H.G.
1900.0 100.0 434.0 At4g17350 827447 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO O.I. C.G. H.G.
1840.6 100.0 144.5 At1g10330 837572 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF O.I. C.G. H.G.
1726.7 100.0 209.6 At2g28620 817411 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV O.I. C.G. H.G.
1532.6 100.0 279.1 At5g41000 834102 YSL4 (YELLOW STRIPE LIKE 4) Arabidopsis thaliana metal-nicotianamine transporter YSL4 O.I. C.G. H.G.
1460.6 100.0 533.0 At5g20110 832133 dynein light chain, putative F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF O.I. C.G. H.G.
1320.3 100.0 218.2 At1g58050 842172 helicase domain-containing protein F:helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;BMOFPVA O.I. C.G. H.G.
1266.7 100.0 303.2 At1g18520 838433 TET11 (TETRASPANIN11) Member of TETRASPANIN family O.I. C.G. H.G.
1250.2 100.0 149.5 At1g24470 839063 short-chain dehydrogenase/reductase (SDR) family protein Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene. O.I. C.G. H.G.
1135.5 100.0 85.2 At1g53860 841823 remorin family protein F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBA O.I. C.G. H.G.
872.6 100.0 153.6 At3g19500 821484 ethylene-responsive protein -related F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
777.3 100.0 132.4 At4g39630 830117 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
776.4 100.0 177.9 At1g62830 842582 LDL1 (LSD1-LIKE1) Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation. O.I. C.G. H.G.
741.0 100.0 143.5 At4g18465 827579 RNA helicase, putative F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA O.I. C.G. H.G.
599.9 100.0 228.9 At3g59640 825133 glycine-rich protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBF O.I. C.G. H.G.
598.4 100.0 201.6 At5g38180 833798 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
575.4 100.0 165.8 At1g32530 840147 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV O.I. C.G. H.G.
570.4 100.0 81.3 At4g33925 829537 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF O.I. C.G. H.G.
547.5 100.0 214.0 At3g56820 824849 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PO O.I. C.G. H.G.
545.0 100.0 404.1 At3g21090 821661 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
516.3 100.0 421.1 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
497.1 100.0 155.1 At4g31670 829295 UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18) F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MOFPBVA O.I. C.G. H.G.
490.7 100.0 163.5 At5g51770 835251 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA O.I. C.G. H.G.
430.2 100.0 119.0 At5g35930 833582 AMP-dependent synthetase and ligase family protein F:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPA O.I. C.G. H.G.
422.7 100.0 183.5 At3g16200 820866 unknown protein F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB O.I. C.G. H.G.
417.2 100.0 114.1 At3g27270 822346 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO O.I. C.G. H.G.
415.9 100.0 152.3 At1g07380 837250 ceramidase family protein F:ceramidase activity;P:biological_process unknown;C:plasma membrane;BMFOP O.I. C.G. H.G.
415.4 100.0 177.7 At5g10910 830958 mraW methylase family protein F:methyltransferase activity;P:unknown;C:unknown;BOMP O.I. C.G. H.G.
408.3 100.0 177.4 At3g42660 823286 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV O.I. C.G. H.G.
406.6 100.0 98.8 At2g01080 814636 - F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF O.I. C.G. H.G.
405.2 100.0 267.8 At3g44490 823574 hda17 (histone deacetylase 17) F:histone deacetylase activity;P:histone deacetylation;C:nucleus;MFOP O.I. C.G. H.G.
402.0 100.0 98.4 At1g69440 843276 AGO7 (ARGONAUTE7) Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds. O.I. C.G. H.G.
393.6 100.0 324.2 At4g02050 828154 sugar transporter, putative F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA O.I. C.G. H.G.
384.2 100.0 203.3 At3g05030 819665 NHX2 (SODIUM HYDROGEN EXCHANGER 2) member of Sodium proton exchanger family O.I. C.G. H.G.
381.7 100.0 115.0 At3g28700 822500 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP O.I. C.G. H.G.
378.2 100.0 106.0 At4g22770 828376 DNA-binding family protein F:DNA binding;P:unknown;C:unknown;PBFMOV O.I. C.G. H.G.
375.1 100.0 131.1 At1g68730 843204 zinc finger (DNL type) family protein F:unknown;P:unknown;C:chloroplast;MFPO O.I. C.G. H.G.
367.6 100.0 182.9 At1g67820 843108 protein phosphatase 2C, putative / PP2C, putative F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV O.I. C.G. H.G.
367.4 100.0 54.1 At5g66610 836793 DAR7 (DA1-RELATED PROTEIN 7) F:zinc ion binding;P:unknown;C:cellular_component unknown;MOPFBV O.I. C.G. H.G.
361.4 100.0 47.7 At1g60630 842357 leucine-rich repeat family protein F:protein kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
353.8 100.0 81.1 At4g38670 830023 pathogenesis-related thaumatin family protein F:unknown;P:response to other organism;C:unknown;PMFBOV O.I. C.G. H.G.
349.0 100.0 66.7 At4g27660 828880 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
345.3 100.0 520.8 At1g47540 841163 trypsin inhibitor, putative F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO O.I. C.G. H.G.
342.8 100.0 101.8 At2g24440 816980 selenium binding F:selenium binding;P:cell redox homeostasis;C:cellular_component unknown;MOFPBAV O.I. C.G. H.G.
337.5 100.0 86.6 At1g68170 843145 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;PBOAM O.I. C.G. H.G.
337.0 100.0 230.6 At5g08535 830753 D111/G-patch domain-containing protein F:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFO O.I. C.G. H.G.
332.7 100.0 152.2 At2g37020 818276 DNA binding / sequence-specific DNA binding F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPA O.I. C.G. H.G.
329.2 100.0 492.7 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
318.8 100.0 117.5 At1g63650 842669 EGL3 (ENHANCER OF GLABRA 3) Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY. O.I. C.G. H.G.
314.8 100.0 141.4 At3g49180 824079 RID3 (ROOT INITIATION DEFECTIVE 3) F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA O.I. C.G. H.G.
304.1 100.0 158.1 At3g06890 819874 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
297.4 100.0 148.6 At2g37080 818284 myosin heavy chain-related F:unknown;P:unknown;C:chloroplast;MOBFPAV O.I. C.G. H.G.
295.1 100.0 157.9 At5g19500 832070 tryptophan/tyrosine permease family protein F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF O.I. C.G. H.G.
278.5 100.0 157.7 At5g03200 831908 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF O.I. C.G. H.G.
276.2 100.0 169.2 At4g37130 829867 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBVA O.I. C.G. H.G.
273.5 100.0 420.0 At2g18390 816354 TTN5 (TITAN 5) Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development. O.I. C.G. H.G.
272.7 100.0 197.4 At1g32360 840128 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
272.0 100.0 231.6 At5g09270 830786 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
266.7 100.0 215.4 At1g04645 839459 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
263.7 100.0 160.2 At2g30080 817559 ZIP6 member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess. O.I. C.G. H.G.
259.4 100.0 209.3 At1g48470 841268 GLN1 Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots. O.I. C.G. H.G.
251.1 100.0 35.8 At2g34980 818062 SETH1 Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway. O.I. C.G. H.G.
245.4 100.0 343.1 At5g22640 832327 emb1211 (embryo defective 1211) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA O.I. C.G. H.G.
242.7 100.0 196.8 At3g04680 819626 CLPS3 (CLP-SIMILAR PROTEIN 3) Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression. O.I. C.G. H.G.
234.4 100.0 252.0 At1g08700 837391 presenilin family protein Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation. O.I. C.G. H.G.
232.0 100.0 158.6 At4g05460 825896 F-box family protein (FBL20) F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MPBOF O.I. C.G. H.G.
225.0 100.0 196.3 At5g51220 835197 ubiquinol-cytochrome C chaperone family protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP O.I. C.G. H.G.
224.3 100.0 111.8 At2g25720 817113 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
219.8 100.0 101.0 At1g19710 838559 glycosyl transferase family 1 protein F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPF O.I. C.G. H.G.
219.1 100.0 81.8 At1g80870 844427 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
214.3 100.0 123.4 At1g76510 843984 ARID/BRIGHT DNA-binding domain-containing protein F:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOB O.I. C.G. H.G.
207.8 100.0 115.1 At5g61330 836254 rRNA processing protein-related F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOBFPVA O.I. C.G. H.G.
207.7 100.0 188.4 At2g24170 816951 endomembrane protein 70, putative F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB O.I. C.G. H.G.
207.6 100.0 125.1 At5g08460 830745 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
206.0 100.0 150.6 At3g26640 822276 LWD2 (LIGHT-REGULATED WD 2) F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
205.8 100.0 110.4 At5g17210 831585 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
204.6 100.0 98.2 At5g62410 836362 SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2) SMC2-1 (SMC2) O.I. C.G. H.G.
203.3 100.0 99.6 At4g15840 827265 protein binding F:protein binding;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
201.9 100.0 217.1 At3g06770 819862 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMA O.I. C.G. H.G.
199.7 100.0 303.8 At3g02690 821274 integral membrane family protein F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF O.I. C.G. H.G.
198.6 100.0 94.3 At2g39725 818557 complex 1 family protein / LVR family protein F:catalytic activity;P:unknown;C:mitochondrion;FMPO O.I. C.G. H.G.
191.5 100.0 170.8 At5g45600 834599 GAS41 The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man. O.I. C.G. H.G.
188.3 100.0 53.2 At2g03280 814857 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
185.3 100.0 154.0 At1g63640 842668 kinesin motor protein-related F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV O.I. C.G. H.G.
182.3 100.0 303.2 At3g59310 825100 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA O.I. C.G. H.G.
175.4 100.0 98.1 At2g34050 817966 - F:unknown;P:protein complex assembly;C:mitochondrion, chloroplast;MFOP O.I. C.G. H.G.
175.2 100.0 189.8 At1g29760 839854 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPFO O.I. C.G. H.G.
165.9 100.0 529.3 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
164.8 100.0 115.4 At4g02390 828049 APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE) Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification . O.I. C.G. H.G.
153.2 99.9 120.4 At1g70350 843371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
151.7 99.9 244.1 At1g29940 839872 NRPA2 Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A). O.I. C.G. H.G.
151.6 99.9 380.5 At3g12650 820445 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
151.5 99.9 379.8 At4g12060 826814 Clp amino terminal domain-containing protein F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP O.I. C.G. H.G.
150.6 99.9 53.1 At3g26800 822294 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
149.4 99.9 145.4 At3g07630 819954 ADT2 (arogenate dehydratase 2) Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250]. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
4247.0	100.0	308.0	At5g14070	831256	ROXY2	Encodes glutaredoxin ROXY2. ROXY2, together with ROXY1 (AT3G02000), controls anther development. roxy1 roxy2 double mutants are sterile and do not produce pollen.	O.I.	C.G.	H.G.
4136.0	100.0	611.2	At3g53380	824506	lectin protein kinase family protein	F:carbohydrate binding, kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
3858.2	100.0	216.1	At1g64260	842731	zinc finger protein-related	F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
2318.7	100.0	339.5	At2g37560	818332	ORC2 (ORIGIN RECOGNITION COMPLEX SECOND LARGEST SUBUNIT 2)	Origin Recognition Complex subunit 2. Involved in the initiation of DNA replication. Regulated transcriptionally during cell cycle, peaking at G1/S-phase. Target of E2F/DF family of transcription factors. Interacts strongly with all ORC subunits.	O.I.	C.G.	H.G.
2218.8	100.0	234.2	At1g30660	839946	nucleic acid binding	F:nucleic acid binding;P:DNA modification, DNA metabolic process;C:unknown;OBVPA	O.I.	C.G.	H.G.
1996.5	100.0	196.5	At1g63210	842626	RNA binding / hydrolase, acting on ester bonds / protein binding / transcription elongation regulator	F:transcription elongation regulator activity, protein binding, hydrolase activity, acting on ester bonds, RNA binding;P:regulation of transcription from RNA polymerase II promoter, nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;C:unknown;BMOFPA	O.I.	C.G.	H.G.
1900.0	100.0	434.0	At4g17350	827447	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
1840.6	100.0	144.5	At1g10330	837572	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMF	O.I.	C.G.	H.G.
1726.7	100.0	209.6	At2g28620	817411	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex, chloroplast;MOBFPAV	O.I.	C.G.	H.G.
1532.6	100.0	279.1	At5g41000	834102	YSL4 (YELLOW STRIPE LIKE 4)	Arabidopsis thaliana metal-nicotianamine transporter YSL4	O.I.	C.G.	H.G.
1460.6	100.0	533.0	At5g20110	832133	dynein light chain, putative	F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
1320.3	100.0	218.2	At1g58050	842172	helicase domain-containing protein	F:helicase activity, ATP binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;BMOFPVA	O.I.	C.G.	H.G.
1266.7	100.0	303.2	At1g18520	838433	TET11 (TETRASPANIN11)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
1250.2	100.0	149.5	At1g24470	839063	short-chain dehydrogenase/reductase (SDR) family protein	Encodes one of the two Arabidopsis homologues to YBR159w encoding a S. cerevisiae beta-ketoacyl reductase (KCR), which catalyzes the first reduction during VLCFA (very long chain fatty acids, >18 carbon) elongation: KCR1 (At1g67730), KCR2 (At1g24470). Complementation of the yeast ybr159Delta mutant demonstrated that the two KCR proteins are divergent and that only AtKCR1 can restore heterologous elongase activity similar to the native yeast KCR gene.	O.I.	C.G.	H.G.
1135.5	100.0	85.2	At1g53860	841823	remorin family protein	F:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMOFBA	O.I.	C.G.	H.G.
872.6	100.0	153.6	At3g19500	821484	ethylene-responsive protein -related	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
777.3	100.0	132.4	At4g39630	830117	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
776.4	100.0	177.9	At1g62830	842582	LDL1 (LSD1-LIKE1)	Encodes a homolog of human Lysine-Specific Demethylase1. Involved in H3K4 methylation of target genes including the flowering time loci FLC and FWA. Located in nucleus. Negatively regulates root elongation. Involved in repression of LRP1 via histone deacetylation.	O.I.	C.G.	H.G.
741.0	100.0	143.5	At4g18465	827579	RNA helicase, putative	F:RNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:biological_process unknown;C:cellular_component unknown;BMOFVPA	O.I.	C.G.	H.G.
599.9	100.0	228.9	At3g59640	825133	glycine-rich protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MPOBF	O.I.	C.G.	H.G.
598.4	100.0	201.6	At5g38180	833798	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
575.4	100.0	165.8	At1g32530	840147	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOBFPAV	O.I.	C.G.	H.G.
570.4	100.0	81.3	At4g33925	829537	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPAOF	O.I.	C.G.	H.G.
547.5	100.0	214.0	At3g56820	824849	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PO	O.I.	C.G.	H.G.
545.0	100.0	404.1	At3g21090	821661	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
516.3	100.0	421.1	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
497.1	100.0	155.1	At4g31670	829295	UBP18 (UBIQUITIN-SPECIFIC PROTEASE 18)	F:cysteine-type endopeptidase activity, ubiquitin thiolesterase activity;P:ubiquitin-dependent protein catabolic process;C:endomembrane system;MOFPBVA	O.I.	C.G.	H.G.
490.7	100.0	163.5	At5g51770	835251	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA	O.I.	C.G.	H.G.
430.2	100.0	119.0	At5g35930	833582	AMP-dependent synthetase and ligase family protein	F:phosphopantetheine binding, acyl carrier activity, catalytic activity, AMP binding, cofactor binding;P:metabolic process;C:cellular_component unknown;BOFMPA	O.I.	C.G.	H.G.
422.7	100.0	183.5	At3g16200	820866	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:Golgi apparatus;OPB	O.I.	C.G.	H.G.
417.2	100.0	114.1	At3g27270	822346	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO	O.I.	C.G.	H.G.
415.9	100.0	152.3	At1g07380	837250	ceramidase family protein	F:ceramidase activity;P:biological_process unknown;C:plasma membrane;BMFOP	O.I.	C.G.	H.G.
415.4	100.0	177.7	At5g10910	830958	mraW methylase family protein	F:methyltransferase activity;P:unknown;C:unknown;BOMP	O.I.	C.G.	H.G.
408.3	100.0	177.4	At3g42660	823286	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV	O.I.	C.G.	H.G.
406.6	100.0	98.8	At2g01080	814636	-	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PF	O.I.	C.G.	H.G.
405.2	100.0	267.8	At3g44490	823574	hda17 (histone deacetylase 17)	F:histone deacetylase activity;P:histone deacetylation;C:nucleus;MFOP	O.I.	C.G.	H.G.
402.0	100.0	98.4	At1g69440	843276	AGO7 (ARGONAUTE7)	Encodes ARGONAUTE7, a member of the ARGONAUTE family, characterised by the presence of PAZ and PIWI domains. Involved in the regulation of developmental timing. Required for the accumulation of TAS3 ta-siRNAs but not for accumulation of miR171, miR173, miR390 or mi391. Localized in mature rosette leaves and floral buds.	O.I.	C.G.	H.G.
393.6	100.0	324.2	At4g02050	828154	sugar transporter, putative	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:plasma membrane, membrane;BFMPOA	O.I.	C.G.	H.G.
384.2	100.0	203.3	At3g05030	819665	NHX2 (SODIUM HYDROGEN EXCHANGER 2)	member of Sodium proton exchanger family	O.I.	C.G.	H.G.
381.7	100.0	115.0	At3g28700	822500	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBMFP	O.I.	C.G.	H.G.
378.2	100.0	106.0	At4g22770	828376	DNA-binding family protein	F:DNA binding;P:unknown;C:unknown;PBFMOV	O.I.	C.G.	H.G.
375.1	100.0	131.1	At1g68730	843204	zinc finger (DNL type) family protein	F:unknown;P:unknown;C:chloroplast;MFPO	O.I.	C.G.	H.G.
367.6	100.0	182.9	At1g67820	843108	protein phosphatase 2C, putative / PP2C, putative	F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;MPOFBV	O.I.	C.G.	H.G.
367.4	100.0	54.1	At5g66610	836793	DAR7 (DA1-RELATED PROTEIN 7)	F:zinc ion binding;P:unknown;C:cellular_component unknown;MOPFBV	O.I.	C.G.	H.G.
361.4	100.0	47.7	At1g60630	842357	leucine-rich repeat family protein	F:protein kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
353.8	100.0	81.1	At4g38670	830023	pathogenesis-related thaumatin family protein	F:unknown;P:response to other organism;C:unknown;PMFBOV	O.I.	C.G.	H.G.
349.0	100.0	66.7	At4g27660	828880	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
345.3	100.0	520.8	At1g47540	841163	trypsin inhibitor, putative	F:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;PO	O.I.	C.G.	H.G.
342.8	100.0	101.8	At2g24440	816980	selenium binding	F:selenium binding;P:cell redox homeostasis;C:cellular_component unknown;MOFPBAV	O.I.	C.G.	H.G.
337.5	100.0	86.6	At1g68170	843145	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;PBOAM	O.I.	C.G.	H.G.
337.0	100.0	230.6	At5g08535	830753	D111/G-patch domain-containing protein	F:nucleic acid binding;P:biological_process unknown;C:intracellular, chloroplast;MPFO	O.I.	C.G.	H.G.
332.7	100.0	152.2	At2g37020	818276	DNA binding / sequence-specific DNA binding	F:sequence-specific DNA binding, DNA binding;P:biological_process unknown;C:chloroplast;MFOPA	O.I.	C.G.	H.G.
329.2	100.0	492.7	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
318.8	100.0	117.5	At1g63650	842669	EGL3 (ENHANCER OF GLABRA 3)	Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.	O.I.	C.G.	H.G.
314.8	100.0	141.4	At3g49180	824079	RID3 (ROOT INITIATION DEFECTIVE 3)	F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA	O.I.	C.G.	H.G.
304.1	100.0	158.1	At3g06890	819874	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
297.4	100.0	148.6	At2g37080	818284	myosin heavy chain-related	F:unknown;P:unknown;C:chloroplast;MOBFPAV	O.I.	C.G.	H.G.
295.1	100.0	157.9	At5g19500	832070	tryptophan/tyrosine permease family protein	F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF	O.I.	C.G.	H.G.
278.5	100.0	157.7	At5g03200	831908	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:N-terminal protein myristoylation;C:unknown;MOPVF	O.I.	C.G.	H.G.
276.2	100.0	169.2	At4g37130	829867	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFPBVA	O.I.	C.G.	H.G.
273.5	100.0	420.0	At2g18390	816354	TTN5 (TITAN 5)	Encodes a member of ARF-like GTPase family. A thaliana has 21 members, in two subfamilies, ARF and ARF-like (ARL) GTPases. Mutant has abnormal mitosis and cell cycle control during seed development.	O.I.	C.G.	H.G.
272.7	100.0	197.4	At1g32360	840128	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
272.0	100.0	231.6	At5g09270	830786	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
266.7	100.0	215.4	At1g04645	839459	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
263.7	100.0	160.2	At2g30080	817559	ZIP6	member of Fe(II) transporter isolog family. Gene expression is not regulated by iron, copper, or zinc deficiency or excess.	O.I.	C.G.	H.G.
259.4	100.0	209.3	At1g48470	841268	GLN1	Encodes cytosolic glutamine synthase isozyme. Expression of mRNA is not detectable in roots.	O.I.	C.G.	H.G.
251.1	100.0	35.8	At2g34980	818062	SETH1	Encodes a putative phosphatidylinositol-glycan synthase subunit C gene. It is involved in the first step of the glycosylphosphatidylinositol (GPI) biosynthetic pathway.	O.I.	C.G.	H.G.
245.4	100.0	343.1	At5g22640	832327	emb1211 (embryo defective 1211)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVA	O.I.	C.G.	H.G.
242.7	100.0	196.8	At3g04680	819626	CLPS3 (CLP-SIMILAR PROTEIN 3)	Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.	O.I.	C.G.	H.G.
234.4	100.0	252.0	At1g08700	837391	presenilin family protein	Encodes a protein similar to animal presenilin whose expression is increased in response to potassium (K+) deprivation.	O.I.	C.G.	H.G.
232.0	100.0	158.6	At4g05460	825896	F-box family protein (FBL20)	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:chloroplast;MPBOF	O.I.	C.G.	H.G.
225.0	100.0	196.3	At5g51220	835197	ubiquinol-cytochrome C chaperone family protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP	O.I.	C.G.	H.G.
224.3	100.0	111.8	At2g25720	817113	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
219.8	100.0	101.0	At1g19710	838559	glycosyl transferase family 1 protein	F:transferase activity, transferring glycosyl groups;P:biosynthetic process;C:Golgi apparatus;BOAMPF	O.I.	C.G.	H.G.
219.1	100.0	81.8	At1g80870	844427	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
214.3	100.0	123.4	At1g76510	843984	ARID/BRIGHT DNA-binding domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:intracellular;MPFOB	O.I.	C.G.	H.G.
207.8	100.0	115.1	At5g61330	836254	rRNA processing protein-related	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MOBFPVA	O.I.	C.G.	H.G.
207.7	100.0	188.4	At2g24170	816951	endomembrane protein 70, putative	F:unknown;P:unknown;C:endomembrane system, integral to membrane;MPOFB	O.I.	C.G.	H.G.
207.6	100.0	125.1	At5g08460	830745	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
206.0	100.0	150.6	At3g26640	822276	LWD2 (LIGHT-REGULATED WD 2)	F:nucleotide binding;P:photoperiodism, flowering, entrainment of circadian clock by photoperiod;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
205.8	100.0	110.4	At5g17210	831585	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
204.6	100.0	98.2	At5g62410	836362	SMC2 (STRUCTURAL MAINTENANCE OF CHROMOSOMES 2)	SMC2-1 (SMC2)	O.I.	C.G.	H.G.
203.3	100.0	99.6	At4g15840	827265	protein binding	F:protein binding;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
201.9	100.0	217.1	At3g06770	819862	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMA	O.I.	C.G.	H.G.
199.7	100.0	303.8	At3g02690	821274	integral membrane family protein	F:unknown;P:unknown;C:chloroplast, membrane;BOAPMF	O.I.	C.G.	H.G.
198.6	100.0	94.3	At2g39725	818557	complex 1 family protein / LVR family protein	F:catalytic activity;P:unknown;C:mitochondrion;FMPO	O.I.	C.G.	H.G.
191.5	100.0	170.8	At5g45600	834599	GAS41	The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.	O.I.	C.G.	H.G.
188.3	100.0	53.2	At2g03280	814857	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
185.3	100.0	154.0	At1g63640	842668	kinesin motor protein-related	F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:plasma membrane;MOFPBAV	O.I.	C.G.	H.G.
182.3	100.0	303.2	At3g59310	825100	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBA	O.I.	C.G.	H.G.
175.4	100.0	98.1	At2g34050	817966	-	F:unknown;P:protein complex assembly;C:mitochondrion, chloroplast;MFOP	O.I.	C.G.	H.G.
175.2	100.0	189.8	At1g29760	839854	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMPFO	O.I.	C.G.	H.G.
165.9	100.0	529.3	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
164.8	100.0	115.4	At4g02390	828049	APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)	Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C.2.4.2.30), thought to be involved in post-translational modification .	O.I.	C.G.	H.G.
153.2	99.9	120.4	At1g70350	843371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
151.7	99.9	244.1	At1g29940	839872	NRPA2	Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).	O.I.	C.G.	H.G.
151.6	99.9	380.5	At3g12650	820445	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
151.5	99.9	379.8	At4g12060	826814	Clp amino terminal domain-containing protein	F:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOP	O.I.	C.G.	H.G.
150.6	99.9	53.1	At3g26800	822294	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
149.4	99.9	145.4	At3g07630	819954	ADT2 (arogenate dehydratase 2)	Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identiﬁed in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].	O.I.	C.G.	H.G.

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GSM ID	GSM133760
Assay name	Lindsey_1-12_heart-stage-root_Rep3_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133760 Assay name Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133760

Assay name Lindsey_1-12_heart-stage-root_Rep3_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues