Microarray experiments to specifically-expressed genes

GSM ID GSM133759
Assay name Lindsey_1-9_heart-stage-cotyledon_Rep3_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2616.8100.0488.3At2g38460818427ATIREG1 (IRON-REGULATED PROTEIN 1)F:transporter activity;P:iron ion transport;C:integral to membrane;MFPOBO.I.C.G.H.G.
2351.1100.0454.0At1g18180838397oxidoreductase, acting on the CH-CH group of donorsF:oxidoreductase activity, acting on the CH-CH group of donors;P:lipid metabolic process;C:plasma membrane;OBFMPO.I.C.G.H.G.
1859.7100.0436.7At4g12760826888unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOO.I.C.G.H.G.
1747.0100.0435.9At5g11690831041ATTIM17-3mitochondrial inner membrane translocaseO.I.C.G.H.G.
1651.3100.0259.3At3g21360821690electron carrier/ oxidoreductaseF:electron carrier activity, oxidoreductase activity;P:biological_process unknown;C:nucleus;BOMPFO.I.C.G.H.G.
1640.0100.0200.8At5g37580--O.I.C.G.H.G.
1378.8100.0417.1At5g49000834959-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVAFO.I.C.G.H.G.
1110.4100.0404.2At2g13690815853PRLI-interacting factor, putativeF:transcription regulator activity;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
1039.8100.0215.2At3g14330820653pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFO.I.C.G.H.G.
968.7100.0204.3At5g65450836670UBP17 (UBIQUITIN-SPECIFIC PROTEASE 17)Encodes a ubiquitin-specific protease.O.I.C.G.H.G.
943.9100.0130.8At5g15510831404-F:molecular_function unknown;P:biological_process unknown;C:unknown;MOPFBVO.I.C.G.H.G.
845.8100.0231.6At1g06050837114unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMO.I.C.G.H.G.
816.3100.0194.0At4g17610827480tRNA/rRNA methyltransferase (SpoU) family proteinF:RNA binding, RNA methyltransferase activity;P:RNA processing;C:endomembrane system;BOMPFAO.I.C.G.H.G.
764.9100.0125.9At1g04730839431AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMFBAPVO.I.C.G.H.G.
759.6100.0180.3At1g68780843209leucine-rich repeat family proteinF:protein binding;P:signal transduction;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
735.8100.079.7At1g17450838317-F:molecular_function unknown;P:unknown;C:unknown;POBO.I.C.G.H.G.
691.1100.0271.7At5g25090832580plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PO.I.C.G.H.G.
672.1100.0184.0At3g55390824705integral membrane family proteinF:unknown;P:unknown;C:unknown;PO.I.C.G.H.G.
654.0100.0179.5At4g31930829323mitochondrial glycoprotein family protein / MAM33 family proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial matrix;PFOO.I.C.G.H.G.
619.4100.0307.9At2g45590819167protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;PMOFBVAO.I.C.G.H.G.
608.9100.0238.4At4g33760829518tRNA synthetase class II (D, K and N) family proteinF:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:mitochondrion, chloroplast, membrane, cytoplasm;BOMFAPO.I.C.G.H.G.
590.2100.0420.6At3g21090821661ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPVO.I.C.G.H.G.
564.0100.0110.5At5g22810832344GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
525.2100.0261.5At1g31830840073amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BMOFAPO.I.C.G.H.G.
507.2100.0210.7At5g56590835760glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane, plant-type cell wall;PFOBO.I.C.G.H.G.
502.0100.0142.4At1g53650841802CID8 (CTC-INTERACTING DOMAIN 8)RNA-binding protein, putative, similar to RNA-binding protein GB:AAA86641 GI:1174153 from (Arabidopsis thaliana).Contains PAB2 domain which facilitates binding to PABC proteins.O.I.C.G.H.G.
498.3100.0149.6At1g67890843117protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, kinase activity;P:signal transduction, protein amino acid phosphorylation, regulation of transcription, DNA-dependent;C:unknown;MPOBFVAO.I.C.G.H.G.
482.6100.0104.6At1g77110844046PIN6 (PIN-FORMED 6)Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.O.I.C.G.H.G.
477.6100.0301.0At1g20760838666calcium-binding EF hand family proteinF:calcium ion binding;P:unknown;C:plasma membrane;MBOFPVAO.I.C.G.H.G.
448.0100.0158.6At5g65490836674-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVAO.I.C.G.H.G.
441.6100.0107.0At1g69380843270unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;FBOPMO.I.C.G.H.G.
425.1100.0245.4At1g03920839369protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:cytosol, plasma membrane;MOPFBVAO.I.C.G.H.G.
419.3100.0192.8At1g55170841960unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAVO.I.C.G.H.G.
402.1100.0451.2At2g38040818382CAC3encodes the carboxyltransferase alpha subunit of acetyl-CoA carboxylase, involved in de novo fatty acid biosynthesisO.I.C.G.H.G.
393.2100.0172.4At1g05360837035unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPBO.I.C.G.H.G.
392.2100.0290.9At1g80680844407SAR3 (SUPPRESSOR OF AUXIN RESISTANCE 3)Mutant has early-flowering phenotype, encodes a putative nucleoporin. Required for the activation of downstream defense pathways by the snc1 mutation. Involved in basal resistance against bacterial pathogens.O.I.C.G.H.G.
388.3100.0175.0At1g14380838000IQD28 (IQ67 DOMAIN PROTEIN 28)F:calmodulin binding;P:biological_process unknown;C:plasma membrane;MOPFBVO.I.C.G.H.G.
384.2100.081.9At1g15480838118DNA bindingF:DNA binding;P:biological_process unknown;C:unknown;PMOFABO.I.C.G.H.G.
367.1100.0591.1At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
365.5100.0115.8At4g00480827965myc-related transcription factor (MYC1)MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminusO.I.C.G.H.G.
339.3100.0260.3At1g17870838366EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3)S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.O.I.C.G.H.G.
332.8100.0356.8At5g08620830763STRS2 (STRESS RESPONSE SUPPRESSOR 2)Similar in sequence to DEAD-box RNA helicases. Binds RNA. Involved in drought, salt and cold stress responses.O.I.C.G.H.G.
316.6100.0146.6At5g13290831170CRN (CORYNE)Encodes a protein with predicted Ser/Thr kinase activity and membrane localization that is involved in the CLV3 signaling pathway that represses WUS expression in the meristem. Loss of function of CRN can suppress the phenotype caused by overexpression of CLV3. SOL2 isolated as a suppressor of root- specific overexpression of CLE19, a clavata3 like gene. sol2 partially suppresses the short root phenotype caused by CLE19 overexpression. Mutant flowers have extra carpels.O.I.C.G.H.G.
316.4100.0104.5At3g20260821570structural constituent of ribosomeF:structural constituent of ribosome;P:translation;C:ribosome, intracellular;MOPFVBO.I.C.G.H.G.
298.0100.063.3At3g49650824127kinesin motor protein-relatedF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAO.I.C.G.H.G.
288.7100.0238.6At5g09270830786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
279.3100.0414.5At3g51130824277unknown proteinF:unknown;P:response to salt stress;C:cellular_component unknown;MFPOO.I.C.G.H.G.
279.3100.0346.9At4g19390827680-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPAO.I.C.G.H.G.
274.5100.0193.9At5g48360834889formin homology 2 domain-containing protein / FH2 domain-containing proteinF:actin binding;P:cellular component organization, actin cytoskeleton organization;C:unknown;MPOFVBAO.I.C.G.H.G.
260.1100.0164.5At5g60210836143-F:unknown;P:unknown;C:plasma membrane;MOBFPAVO.I.C.G.H.G.
258.7100.0357.7At5g66880836822SNRK2.3 (SUCROSE NONFERMENTING 1(SNF1)-RELATED PROTEIN KINASE 2.3)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. Enzyme involved in the ABA signaling during seed germination, dormancy and seedling growth.O.I.C.G.H.G.
246.1100.0174.5At5g57610835865protein kinase family proteinF:protein serine/threonine/tyrosine kinase activity, protein kinase activity;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
241.3100.0210.9At5g04920830374vacuolar protein sorting 36 family protein / VPS36 family proteinF:transporter activity;P:vesicle-mediated transport;C:ESCRT II complex;MFOPO.I.C.G.H.G.
241.1100.0103.3At5g56580835759MKK6 (MAP KINASE KINASE 6)Encodes a member of the MAP Kinase Kinase family of proteins. It can phosphorylate MPK12 in vitro and it can be dephosphorylated by MKP2 in vitro.O.I.C.G.H.G.
239.6100.0279.2At4g39300830086unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
238.9100.075.8At4g00200828162DNA bindingF:DNA binding;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
238.4100.0125.9At5g57960835907GTP-binding family proteinF:GTP binding;P:unknown;C:chloroplast;BOMAPFO.I.C.G.H.G.
234.4100.0119.4At2g41120818711unknown proteinF:unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
224.9100.0103.3At2g07170815286bindingF:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMAO.I.C.G.H.G.
220.4100.0101.3At1g14310837992haloacid dehalogenase-like hydrolase family proteinF:hydrolase activity, catalytic activity, phosphoglycolate phosphatase activity;P:metabolic process;C:cellular_component unknown;BOMAPFO.I.C.G.H.G.
218.3100.0447.6At5g5025083509031 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein RNP-T, putative / RNA-binding protein 1/2/3, putative / RNA-binding protein cp31, putativeEncodes a RNA binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase).O.I.C.G.H.G.
214.9100.0143.1At4g27120828820unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAO.I.C.G.H.G.
212.3100.056.3At4g04190825734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
208.3100.0434.6At5g47500834800pectinesterase family proteinF:pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
208.3100.0164.7At4g24460828548unknown proteinF:unknown;P:unknown;C:chloroplast;OPBMO.I.C.G.H.G.
207.6100.0107.2At1g48050841223KU80Ku80 and ku70 form the heterodimer complex Ku, required for proper maintenance of the telomeric C strand. Ku regulates the extension of the telomeric G strand. Interacts with WEX, and this interaction stimulates the WEX exonuclease activity. Binds double stranded DNA breaks as a heterodimer with Ku70, involved in non-homologous end joining repair. Mutants are defective in T-DNA integration. Over expression confers increased resistance to DNA damage agents and increased susceptibility to T-DNA transformation.O.I.C.G.H.G.
207.5100.0380.2At2g38810818463HTA8 (HISTONE H2A 8)Encodes HTA8, a histone H2A protein.O.I.C.G.H.G.
206.7100.060.7At5g27110832769pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBO.I.C.G.H.G.
200.0100.060.3At1g15510838121pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POFMBO.I.C.G.H.G.
196.7100.0481.5At5g51210835196OLEO3 (OLEOSIN3)Encodes oleosin3, a protein found in oil bodies, involved in seed lipid accumulation.O.I.C.G.H.G.
190.2100.0137.8At5g57920835903plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
189.3100.0114.2At2g03150814844emb1579 (embryo defective 1579)F:binding, calcium ion binding;P:embryonic development ending in seed dormancy;C:cytosol;MOFBPVAO.I.C.G.H.G.
188.7100.0175.6At1g49040841327SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)Encodes soluble protein containing N-terminal DENN domain and eight C-terminal WD-40 repeats. Involved in cytokinesis of guard mother cells and leaf epidermal cells. The overall growth and development of mutant plants is severely affected, they are smaller than wt, with defects in seedling development, leaf expansion and flower morphology which renders the mutant conditionally sterile.O.I.C.G.H.G.
186.5100.0125.3At1g11330837675S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:plasma membrane;MPOBFVAO.I.C.G.H.G.
181.4100.095.4At5g48910834949pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBO.I.C.G.H.G.
177.0100.0295.6At5g1552083140540S ribosomal protein S19 (RPS19B)F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, ribosome, nucleolus, membrane;MOAPFBO.I.C.G.H.G.
174.9100.0152.1At1g17110838281UBP15 (UBIQUITIN-SPECIFIC PROTEASE 15)Encodes a ubiquitin-specific protease, and its activity has been confirmed in an in vitro assay. ubp15 mutants have defects in cell proliferation, and the associated processes of leaf, root, stem, flower, and silique development. UBP15 can be found in the nucleus and cytoplasm in transient assays. Though UBP15 is expressed in many tissues, UBP15 transcript levels are higher in rosette leaves and inflorescences than in other parts of the plant.O.I.C.G.H.G.
174.1100.0126.2At5g11270830997OCP3 (OVEREXPRESSOR OF CATIONIC PEROXIDASE 3)Encodes a homeodomain transcription factor involved in mediating resistance to infection by necrotrophic pathogens dependent on perception of jasmonic acid through COI1. Expressed in the nucleus. Downregulated upon fungal infection. Also involved in drought tolerance.O.I.C.G.H.G.
173.1100.0245.1At3g55050824671serine/threonine protein phosphatase 2C (PP2C6)F:protein serine/threonine phosphatase activity, catalytic activity;P:protein amino acid dephosphorylation;C:protein serine/threonine phosphatase complex;PMOFBO.I.C.G.H.G.
167.7100.0216.2At3g26690822281ATNUDX13 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13)Encodes AtNUDT13, a mitochondrial Nudix hydrolase specific for long-chain diadenosine polyphosphates.O.I.C.G.H.G.
166.9100.0121.7At1g08130837333ATLIG1 (ARABIDOPSIS THALIANA DNA LIGASE 1)Encodes the Arabidopsis DNA ligase 1 that provides the major DNA ligase activity in cells and plays a key role in both DNA replication and excision repair pathways. Indispensable for cell viability. AtLIG1 expresses one major and two minor mRNA transcripts differing only in the length of the 5' untranslated leader sequences preceding a common ORF. Translation from the first in-frame start codon produces an AtLIG1 isoform that is targeted exclusively to the mitochondria. Translation initiation from the second in-frame start codon produces an AtLIG1 isoform targeted only to the nucleus.O.I.C.G.H.G.
162.299.9137.1At1g57870842162ATSK42 (ARABIDOPSIS SHAGGY-LIKE KINASE 42)F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:response to salt stress, hyperosmotic response;C:cytosol;MOPFBVAO.I.C.G.H.G.
160.899.9269.8At3g58750825044CSY2 (citrate synthase 2)Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.O.I.C.G.H.G.
153.499.9195.2At1g06780837189GAUT6 (Galacturonosyltransferase 6)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
152.699.9421.8At1g62290842526aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, lipid metabolic process;C:vacuole;MFOPBO.I.C.G.H.G.
152.299.9270.3At5g53650835446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
152.199.946.8At2g20770816606GCL2 (GCR2-LIKE 2)Encodes a protein with reported similarity to GCR2 a putative G protein coupled receptor thought to be an ABA receptor.GCL2 also has similarity to LANCL1 and LANCL2, human homologs of bacterial lanthionine synthetase.O.I.C.G.H.G.
151.999.9248.8At3g10350820197anion-transporting ATPase family proteinF:ATP binding;P:cellular metal ion homeostasis, anion transport;C:chloroplast stroma, chloroplast, membrane;BOAMFPO.I.C.G.H.G.
144.899.9231.7At5g25630832639pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
134.799.915.9At1g47990841217ATGA2OX4 (ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 4)Encodes a gibberellin 2-oxidase. AtGA2OX4 expression is responsive to cytokinin and KNOX activities.O.I.C.G.H.G.
130.199.9664.2At5g13000831140ATGSL12 (glucan synthase-like 12)encodes a gene similar to callose synthaseO.I.C.G.H.G.
129.499.9156.8At1g11790837725ADT1 (arogenate dehydratase 1)Encodes a plastid-localized arogenate dehydratase involved in phenylalanine biosynthesis. Not less than six genes encoding ADT were identified in the Arabidopsis genome: ADT1 [At1g11790]; ADT2 [At3g07630]; ADT3 [At2g27820]; ADT4 [At3g44720]; ADT5 [At5g22630]; and ADT6 [At1g08250].O.I.C.G.H.G.
128.499.9105.1At5g14610831313ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein bindingF:protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:cellular_component unknown;BMOFPAVO.I.C.G.H.G.
126.499.9286.1At2g30000817551-F:unknown;P:unknown;C:cellular_component unknown;MFOPO.I.C.G.H.G.
125.399.968.7At3g09700820127DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:unknown;OMBFPVO.I.C.G.H.G.
124.399.9208.8At1g54990841941AXR4 (AUXIN RESISTANT 4)auxin response mutant (AXR4)O.I.C.G.H.G.
121.799.9204.5At1g71691843496GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOMO.I.C.G.H.G.
120.199.9161.0At2g28600817408ATP binding / ATP-dependent helicase/ nucleic acid bindingF:nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
116.599.9111.0At3g56850824852AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation.O.I.C.G.H.G.
114.899.9228.8At1g74340843775dolichol phosphate-mannose biosynthesis regulatory protein-relatedF:molecular_function unknown;P:macromolecule biosynthetic process;C:integral to endoplasmic reticulum membrane, endomembrane system;MFOPO.I.C.G.H.G.



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