Microarray experiments to specifically-expressed genes

GSM ID GSM133758
Assay name Lindsey_1-11_heart-stage-root_Rep2_ATH1
GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
4571.0100.0560.9At5g46680834711pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
2371.7100.0232.0At1g26870837796FEZ (FEZ)F:transcription factor activity;P:multicellular organismal development, response to auxin stimulus, root cap development, somatic stem cell division, positive regulation of asymmetric cell division;C:nucleus;PO.I.C.G.H.G.
1595.9100.0402.6At4g13050826919acyl-(acyl carrier protein) thioesterase, putative / acyl-ACP thioesterase, putative / oleoyl-(acyl-carrier protein) hydrolase, putative / S-acyl fatty acid synthase thioesterase, putativeF:acyl carrier activity;P:fatty acid biosynthetic process;C:chloroplast;BPOMO.I.C.G.H.G.
1140.5100.0255.5At1g48430841264dihydroxyacetone kinase family proteinF:glycerone kinase activity, ATP binding;P:glycerol metabolic process;C:cellular_component unknown;BOFMPAO.I.C.G.H.G.
1071.2100.0242.2At5g55250835618IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.O.I.C.G.H.G.
982.7100.0306.8At1g29220839796transcriptional regulator family proteinF:transcription regulator activity;P:biological_process unknown;C:cellular_component unknown;MOFPVBAO.I.C.G.H.G.
904.7100.01002.2At2g38710818453AMMECR1 familyF:unknown;P:response to salt stress;C:cellular_component unknown;BMAOFPO.I.C.G.H.G.
895.3100.0163.5At5g46560834699unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid lumen;FPOMO.I.C.G.H.G.
792.3100.090.5At3g10200820182dehydration-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOMFO.I.C.G.H.G.
790.1100.0413.2At4g13140--O.I.C.G.H.G.
789.8100.0341.9At1g02310839444glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putativeF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAMO.I.C.G.H.G.
773.5100.0264.9At1g03660839033-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
757.4100.0111.6At1g31760840063SWIB complex BAF60b domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFMVO.I.C.G.H.G.
692.3100.0496.1At1g43580840942unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
628.1100.0125.9At3g45590823701ATSEN1 (SPLICING ENDONUCLEASE 1)Encodes a catalytic subunit of tRNA splicing endonuclease.O.I.C.G.H.G.
615.4100.0765.4At4g12060826814Clp amino terminal domain-containing proteinF:protein binding, ATP binding;P:protein metabolic process;C:plastid stroma, chloroplast, chloroplast stroma, chloroplast envelope;BOPO.I.C.G.H.G.
612.2100.0146.6At1g60970842388clathrin adaptor complex small chain family proteinF:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat;MPFOO.I.C.G.H.G.
606.5100.0529.5At3g02690821274integral membrane family proteinF:unknown;P:unknown;C:chloroplast, membrane;BOAPMFO.I.C.G.H.G.
573.3100.089.0At4g31060829233AP2 domain-containing transcription factor, putativeencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
535.4100.0207.1At5g13960831244SUVH4 (SU(VAR)3-9 HOMOLOG 4)Encodes a histone 3 lysine 9 specific methyltransferase involved in the maintenance of DNA methylation. SUVH4/KYP is a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. In kyp mutants, there is a loss of CpNpG methylation. The protein was shown to bind to methylated cytosines of CG, CNG and CNN motifs via its SRA domain but has a preference for the latter two. There is also evidence that KYP/SUVH4 might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.O.I.C.G.H.G.
476.0100.074.2At3g24340822023chr40 (chromatin remodeling 40)F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:unknown;C:unknown;BMOFPVAO.I.C.G.H.G.
463.7100.0191.0At1g18320838412mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family proteinF:protein transporter activity, P-P-bond-hydrolysis-driven protein transmembrane transporter activity;P:protein transport;C:mitochondrial inner membrane, mitochondrial inner membrane presequence translocase complex;MFPOO.I.C.G.H.G.
460.5100.0265.5At2g18330816348AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:unknown;OMBFPAVO.I.C.G.H.G.
435.6100.0367.3At1g63050842608membrane bound O-acyl transferase (MBOAT) family proteinF:acyltransferase activity;P:biological_process unknown;C:endomembrane system, membrane;MFOBPO.I.C.G.H.G.
434.8100.0263.4At3g04680819626CLPS3 (CLP-SIMILAR PROTEIN 3)Encodes a nuclear protein that functions in mRNA processing. Mutations in this gene cause embryo lethality and reduced transmission through the female gametophyte. Over-expression of a CLPS3:TAP protein changes the relative levels of two alternatively processed FCA transcripts. It also causes abnormal phyllotaxy and flower development, early flowering under long and short days, and increased levels of CUC1 and WUS expression.O.I.C.G.H.G.
430.6100.0289.2At1g53460841781unknown proteinF:unknown;P:unknown;C:unknown;OMPFBAVO.I.C.G.H.G.
417.5100.0329.2At1g72340843566eukaryotic translation initiation factor 2B family protein / eIF-2B family proteinF:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAPO.I.C.G.H.G.
401.2100.0387.2At1g28110839704SCPL45 (SERINE CARBOXYPEPTIDASE-LIKE 45 PRECURSOR)F:serine-type carboxypeptidase activity;P:proteolysis;C:plant-type cell wall;PMFOBO.I.C.G.H.G.
400.8100.0185.7At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.O.I.C.G.H.G.
393.5100.0352.8At1g11360837678universal stress protein (USP) family proteinF:unknown;P:response to stress;C:cytosol, plasma membrane;PBMFAOO.I.C.G.H.G.
388.9100.087.9At3g47010823854hydrolase, hydrolyzing O-glycosyl compoundsF:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAMO.I.C.G.H.G.
371.9100.0540.5At1g47540841163trypsin inhibitor, putativeF:ion channel inhibitor activity;P:defense response;C:endomembrane system, extracellular region;POO.I.C.G.H.G.
360.0100.0266.4At5g09270830786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
359.3100.0779.0At5g38160833796protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
335.6100.031.5At3g58590825028pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBO.I.C.G.H.G.
305.1100.0331.4At5g13240831164transcription regulatorF:transcription regulator activity;P:negative regulation of transcription from RNA polymerase III promoter;C:nucleus;MFOPO.I.C.G.H.G.
301.9100.0173.1At4g11270826729transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cytosol;MFBOPO.I.C.G.H.G.
298.4100.0229.9At1g75710843905zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:unknown;C:intracellular;OPMFO.I.C.G.H.G.
297.5100.0128.8At2g25720817113unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
277.9100.0258.6At1g75510843887transcription initiation factor IIF beta subunit (TFIIF-beta) family proteinF:RNA polymerase II transcription factor activity, general RNA polymerase II transcription factor activity, catalytic activity, ATP binding, ATP-dependent helicase activity;P:transcription initiation from RNA polymerase II promoter, transcription from RNA polymerase II promoter;C:transcription factor TFIIF complex, mitochondrion;MFPOO.I.C.G.H.G.
275.0100.085.7At1g08860837408BON3 (BONZAI 3)Encodes a copine-like protein, which is a member of a newly identified class of calcium-dependent, phospholipid binding proteins that are present in a wide range of organisms. Overexpression of this gene suppresses bon1-1 phenotypes. Double mutant analyses with bon1-1 suggest that BON1 and BON3 have overlapping functions in maintaining cellular homeostasis and inhibiting cell death.O.I.C.G.H.G.
274.6100.0476.5At3g28730822505ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1O.I.C.G.H.G.
269.5100.0271.0At3g61930825366unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;PO.I.C.G.H.G.
268.2100.0104.4At1g18190838398GC2 (golgin candidate 2)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC2 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (508668 aa) portion of the protein.O.I.C.G.H.G.
265.6100.0156.4At3g21430821697--O.I.C.G.H.G.
264.5100.070.6At3g43920823508ribonuclease III family proteinEncodes a ribonuclease III family protein that is required for endogenous RDR2-dependent siRNA (but not miRNA) formation.O.I.C.G.H.G.
261.2100.088.7At1g79670844306RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1)Encodes a receptor-like kinase that does not contain an extracellular leucine-rich repeat domain. A novel type of dominant disease-resistance protein that confers resistance to a broad spectrum of Fusarium races.O.I.C.G.H.G.
251.6100.056.1At2g42630--O.I.C.G.H.G.
251.0100.0530.5At5g56630835764PFK7 (PHOSPHOFRUCTOKINASE 7)F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAVO.I.C.G.H.G.
249.5100.075.0At3g13674820574unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
236.3100.0103.8At4g39235830079unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
233.9100.0157.6At5g49020834961PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A)Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts.O.I.C.G.H.G.
232.2100.0273.1At1g74790843818catalyticF:catalytic activity;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;OBPMAFO.I.C.G.H.G.
230.3100.0465.2At4g13780827012methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putativeF:methionine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:response to cadmium ion, methionyl-tRNA aminoacylation;C:cytosol;OBMFAPVO.I.C.G.H.G.
229.0100.035.9At4g13070826921group II intron splicing factor CRS1-relatedF:RNA binding;P:biological_process unknown;C:unknown;POMBO.I.C.G.H.G.
210.5100.01136.6At5g38170833797protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
202.7100.0282.4At1g80270844367DNA-binding protein, putativeF:DNA binding;P:biological_process unknown;C:chloroplast envelope;POMFO.I.C.G.H.G.
202.3100.055.5At5g46640834707DNA-binding family proteinF:DNA binding;P:unknown;C:unknown;PBMOFO.I.C.G.H.G.
201.7100.0216.9At1g44110841014CYCA1F:cyclin-dependent protein kinase regulator activity;P:response to cyclopentenone, regulation of cell cycle;C:nucleus;MPOFVBO.I.C.G.H.G.
198.4100.0123.6At4g18020827527APRR2Encodes pseudo-response regulator 2 (APRR2).O.I.C.G.H.G.
195.8100.044.4At4g26180828724mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOVO.I.C.G.H.G.
194.5100.0240.8At4g17620827482glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOMFPVAO.I.C.G.H.G.
185.9100.0270.2At1g29940839872NRPA2Encodes a subunit of RNA polymerase 1 (aka RNA polymerase A).O.I.C.G.H.G.
183.5100.0222.1At4g34090829555unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;POO.I.C.G.H.G.
183.4100.0101.1At1g64600842768copper ion binding / methyltransferaseF:methyltransferase activity, copper ion binding;P:translation;C:cellular_component unknown;MFOBPO.I.C.G.H.G.
182.4100.051.0At2g33640817930zinc finger (DHHC type) family proteinF:zinc ion binding;P:unknown;C:endomembrane system;MOFPO.I.C.G.H.G.
181.9100.035.5At3g04130819568pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBAO.I.C.G.H.G.
179.6100.056.6At1g02970839453WEE1 (ARABIDOPSIS WEE1 KINASE HOMOLOG)Protein kinase that negatively regulates the entry into mitosis.O.I.C.G.H.G.
178.8100.0167.4At2g39220818507PLP6 (PATATIN-LIKE PROTEIN 6)F:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:unknown;PBOMFO.I.C.G.H.G.
175.6100.0592.2At2g40765818673unknown proteinF:molecular_function unknown;P:biological_process unknown;C:mitochondrion, mitochondrial respiratory chain complex III;PO.I.C.G.H.G.
173.1100.0210.0At5g58640835978selenoprotein-relatedF:selenium binding;P:cell redox homeostasis;C:endoplasmic reticulum, plasma membrane;MPOO.I.C.G.H.G.
172.0100.077.3At1g15150838080MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
170.9100.0134.5At3g56850824852AREB3 (ABA-RESPONSIVE ELEMENT BINDING PROTEIN 3)Encodes an ABA-responsive element binding protein with a bZIP domain. Located in the nucleus and expressed in the embryo during seed maturation.O.I.C.G.H.G.
167.8100.0335.1At2g45990819207unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast stroma;OBPO.I.C.G.H.G.
167.1100.0176.4At3g62810825456complex 1 family protein / LVR family proteinF:catalytic activity;P:unknown;C:unknown;MFPOO.I.C.G.H.G.
165.9100.052.6At5g04070830286short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
164.399.9239.2At5g11000830967unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PO.I.C.G.H.G.
162.799.976.8At5g21010832225ATBPM5 (BTB-POZ and MATH domain 5)F:protein binding;P:biological_process unknown;C:unknown;MPOFVO.I.C.G.H.G.
155.099.984.8At1g61065842398unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
152.199.972.9At1g13030837860sphere organelles protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPVAO.I.C.G.H.G.
151.199.9352.0At2g30550817604lipase class 3 family proteinF:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMVO.I.C.G.H.G.
149.399.9526.9At3g25530822139GLYR1 (GLYOXYLATE REDUCTASE 1)Encodes gamma-hydroxybutyrate dehydrogenase (AtGHBDH). Contains a NADP-binding domain. GHBDH is proposed to function in oxidative stress tolerance.O.I.C.G.H.G.
148.199.9381.4At3g04550819611unknown proteinF:unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPMOO.I.C.G.H.G.
142.599.9113.1At5g37010833671unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVAO.I.C.G.H.G.
141.499.9263.8At4g16390827333-F:unknown;P:unknown;C:chloroplast;POFMBAO.I.C.G.H.G.
141.399.965.3At3g14980820727PHD finger transcription factor, putativeF:protein binding, DNA binding, zinc ion binding, N-acetyltransferase activity;P:regulation of transcription, DNA-dependent, metabolic process;C:nucleus;MPFOBAO.I.C.G.H.G.
136.199.9117.0At2g17670816274pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:unknown;POMFBAO.I.C.G.H.G.
136.199.957.5At1g62340842532ALE1 (ABNORMAL LEAF-SHAPE 1)Subtilisin-like serine protease required for epidermal surface formation in embryos and juvenile plantsO.I.C.G.H.G.
134.199.9458.3At2g32480817809membrane-associated zinc metalloprotease, putativeF:protein binding, metalloendopeptidase activity;P:proteolysis;C:chloroplast, plastid;BOPAMO.I.C.G.H.G.
134.199.9253.7At5g53650835446unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
133.399.9255.9At1g10030837538ERG28 (Arabidopsis homolog of yeast ergosterol28)F:unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;FMPOO.I.C.G.H.G.
131.199.994.4At3g56900824857aladin-related / adracalin-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAO.I.C.G.H.G.
128.799.977.2At1g29270839801unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
128.499.9406.7At2g03870814913small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putativeF:molecular_function unknown;P:unknown;C:small nucleolar ribonucleoprotein complex, nucleus;MFAOPO.I.C.G.H.G.
126.999.974.3At5g09640830823SCPL19encodes a serine carboxypeptidase-like (SCPL) protein. Mutants accumulate sinapoylglucose instead of sinapoylcholine, and have increased levels of choline and decreased activity of the enzyme sinapoylglucose:choline sinapoyltransferase.O.I.C.G.H.G.
124.699.9137.7At5g45600834599GAS41The GSA41 human homolog is expressed in nuclei and binds NuMA, a component of the nuclear matrix in interphase nuclei. In addition to Arabidopsis, GSA41 is found in Drosophila, C.elegans, yeast and man.O.I.C.G.H.G.
120.799.994.4At1g76050843937pseudouridine synthase family proteinF:pseudouridine synthase activity;P:pseudouridine synthesis;C:chloroplast;BOMFPAO.I.C.G.H.G.
118.699.965.9At3g13000820486transcription factorF:transcription factor activity;P:regulation of transcription;C:vacuole;PBOMFO.I.C.G.H.G.
117.699.990.4At3g55920824758peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putativeF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;BOMFPAVO.I.C.G.H.G.
111.399.9139.1At1g04645839459self-incompatibility protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.



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