CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133757

Assay name Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
3420.2 100.0 973.2 At4g19400 827681 actin binding F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO O.I. C.G. H.G.
3214.9 100.0 581.5 At2g38880 818472 NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1) Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance. O.I. C.G. H.G.
2889.4 100.0 770.1 At1g07970 837312 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB O.I. C.G. H.G.
2692.9 100.0 608.6 At4g24700 828572 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1425.1 100.0 146.4 At1g15080 838072 LPP2 (LIPID PHOSPHATE PHOSPHATASE 2) Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals. O.I. C.G. H.G.
1408.7 100.0 802.4 At3g06790 819864 plastid developmental protein DAG, putative F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
1131.8 100.0 312.1 At3g62330 825406 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
1129.6 100.0 353.5 At2g21195 816656 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
1048.9 100.0 539.3 At3g03490 821248 PEX19-1 (peroxin 19-1) F:molecular_function unknown;P:peroxisome organization;C:peroxisome;MFOBPA O.I. C.G. H.G.
985.3 100.0 323.4 At5g18570 831975 GTP1/OBG family protein F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV O.I. C.G. H.G.
817.7 100.0 1669.6 At5g32450 833204 RNA recognition motif (RRM)-containing protein F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO O.I. C.G. H.G.
777.2 100.0 541.2 At2g36990 818273 SIGF (RNA POLYMERASE SIGMA-SUBUNIT F) Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. O.I. C.G. H.G.
762.5 100.0 62.0 At1g49530 841377 GGPS6 (geranylgeranyl pyrophosphate synthase 6) encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase O.I. C.G. H.G.
719.3 100.0 484.4 At2g20740 816603 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO O.I. C.G. H.G.
707.7 100.0 853.5 At5g24400 832511 emb2024 (embryo defective 2024) F:6-phosphogluconolactonase activity, catalytic activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:peroxisome, chloroplast stroma, chloroplast;BOMFP O.I. C.G. H.G.
695.2 100.0 34.6 At3g42090 823180 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
679.2 100.0 123.7 At4g01570 828133 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFMBA O.I. C.G. H.G.
540.9 100.0 453.7 At4g38890 830044 dihydrouridine synthase family protein F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA O.I. C.G. H.G.
492.5 100.0 547.2 At5g08180 830714 ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein F:RNA binding;P:ribosome biogenesis;C:nucleolus;MOFAP O.I. C.G. H.G.
456.6 100.0 282.3 At3g13940 820607 DNA binding / DNA-directed RNA polymerase F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:nucleus;FMPOB O.I. C.G. H.G.
389.3 100.0 144.9 At5g05480 830431 unknown protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPABO O.I. C.G. H.G.
293.7 100.0 148.0 At1g45170 841085 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
253.9 100.0 166.6 At3g07400 819928 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB O.I. C.G. H.G.
253.3 100.0 301.7 At1g80280 844368 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOPMFA O.I. C.G. H.G.
212.3 100.0 248.9 At4g20170 827763 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOF O.I. C.G. H.G.
145.2 99.9 111.7 At5g14610 831313 ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding F:protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:cellular_component unknown;BMOFPAV O.I. C.G. H.G.
140.3 99.9 970.4 At1g51650 841590 ATP synthase epsilon chain, mitochondrial F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP biosynthetic process, ATP synthesis coupled proton transport;C:mitochondrion;MPOF O.I. C.G. H.G.
136.2 99.9 1550.9 At3g56340 824801 40S ribosomal protein S26 (RPS26C) F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MFOPA O.I. C.G. H.G.
129.7 99.9 669.9 At5g08300 830726 succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative F:succinate-CoA ligase (GDP-forming) activity, metal ion binding;P:response to cadmium ion, metabolic process;C:mitochondrion, cell wall;OBMAFP O.I. C.G. H.G.
100.8 99.9 7.4 At1g39430 840698 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
96.9 99.9 18.0 At2g40580 818653 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA O.I. C.G. H.G.
92.1 99.9 346.1 At1g79750 844314 ATNADP-ME4 (NADP-malic enzyme 4) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed. O.I. C.G. H.G.
84.0 99.9 11.0 At5g45180 834554 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMP O.I. C.G. H.G.
80.0 99.9 16.5 At5g49380 834998 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP O.I. C.G. H.G.
78.6 99.9 15.6 At4g27220 828830 disease resistance protein (NBS-LRR class), putative F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA O.I. C.G. H.G.
78.1 99.9 40.9 At2g16340 816130 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAV O.I. C.G. H.G.
78.0 99.9 9.9 At2g17860 816296 pathogenesis-related thaumatin family protein F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV O.I. C.G. H.G.
76.0 99.9 360.7 At5g62740 836395 band 7 family protein F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV O.I. C.G. H.G.
74.3 99.9 8.2 At1g41900 840803 transposable element gene pseudogene of myosin heavy chain-related O.I. C.G. H.G.
71.5 99.9 7.7 At3g30310 822731 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
67.1 99.8 20.5 At3g19160 821450 ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES) Encodes cytokinin synthase. O.I. C.G. H.G.
66.4 99.8 20.0 At3g30230 822723 myosin heavy chain-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAV O.I. C.G. H.G.
64.9 99.8 3.5 At3g29732 3769027 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
63.4 99.8 14.4 At5g02920 831396 ubiquitin-protein ligase F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMFO O.I. C.G. H.G.
60.3 99.8 13.6 At2g03770 814904 sulfotransferase family protein F:sulfotransferase activity;P:unknown;C:unknown;MOPBF O.I. C.G. H.G.
60.0 99.8 10.5 At5g65130 836637 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
59.5 99.8 11.5 At3g42460 823249 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
56.6 99.8 9.2 At2g23230 816855 terpene synthase/cyclase family protein F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO O.I. C.G. H.G.
56.3 99.8 1083.3 At1g75950 843928 SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1) SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif. O.I. C.G. H.G.
53.6 99.8 9.7 At2g14450 815933 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.5 99.8 48.3 At1g65240 842831 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PMFO O.I. C.G. H.G.
52.4 99.8 14.2 At4g04130 825725 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
52.2 99.8 6.1 At1g39350 840697 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
51.1 99.8 33.8 At3g50540 824218 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
49.0 99.8 10.9 At3g22020 821762 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.6 99.8 10.2 At2g45350 819143 CRR4 (CHLORORESPIRATORY REDUCTION 4) Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast. O.I. C.G. H.G.
48.3 99.8 142.3 At4g15630 827240 integral membrane family protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
47.9 99.8 11.9 At5g18350 831953 ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV O.I. C.G. H.G.
47.2 99.8 16.3 At4g36105 829767 unknown protein F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV O.I. C.G. H.G.
46.5 99.8 2299.0 At3g04400 819595 emb2171 (embryo defective 2171) F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic large ribosomal subunit, ribosome;BOPMAF O.I. C.G. H.G.
46.0 99.8 9.5 At2g13630 815848 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
45.3 99.8 6.6 At2g12920 3768702 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
45.2 99.8 18.1 At5g62830 836404 F-box family protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
44.5 99.8 15.0 At1g01690 839243 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA O.I. C.G. H.G.
43.9 99.8 17.2 At2g05600 815109 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
43.7 99.8 11.5 At3g20400 821585 EMB2743 (EMBRYO DEFECTIVE 2743) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P O.I. C.G. H.G.
43.0 99.8 13.3 At5g57570 835861 - F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO O.I. C.G. H.G.
42.7 99.8 15.8 At1g23690 838979 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
42.4 99.8 12.8 At3g42550 823265 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO O.I. C.G. H.G.
42.2 99.8 8.3 At3g62440 825417 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
42.0 99.8 20.1 At2g15510 3768657 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
42.0 99.8 16.7 At1g05550 837057 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
41.8 99.8 11.4 At4g17200 827431 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
40.2 99.8 13.4 At5g37280 833702 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
40.1 99.8 11.2 At5g01070 831898 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO O.I. C.G. H.G.
39.7 99.8 9.0 At1g70040 843341 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
39.5 99.8 22.1 At2g34555 818019 ATGA2OX3 (gibberellin 2-oxidase 3) F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM O.I. C.G. H.G.
39.0 99.8 12.3 At4g01760 828215 DC1 domain-containing protein F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO O.I. C.G. H.G.
38.1 99.8 25.5 At5g27910 832857 NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO O.I. C.G. H.G.
37.9 99.8 27.9 At1g29230 839797 CIPK18 (CBL-INTERACTING PROTEIN KINASE 18) Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18). O.I. C.G. H.G.
37.9 99.8 9.0 At1g34545 3766918 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
37.1 99.7 12.1 At3g61120 825284 AGL13 (AGAMOUS-LIKE 13) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
36.5 99.7 16.3 At5g44850 834515 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
36.4 99.7 12.3 At4g11940 826801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.2 99.7 10.2 At2g07490 3768135 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
36.1 99.7 8.0 At3g16880 820943 F-box protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
35.7 99.7 16.0 At2g34360 817999 antiporter/ drug transporter/ transporter F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM O.I. C.G. H.G.
35.6 99.7 11.8 At2g04820 3768606 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
35.5 99.7 14.4 At2g27410 817286 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
35.2 99.7 1051.4 At1g07770 837291 RPS15A (ribosomal protein s15a) Encodes cytoplasmic ribosomal protein S15a. O.I. C.G. H.G.
35.2 99.7 131.9 At1g44760 841040 universal stress protein (USP) family protein F:molecular_function unknown;P:response to stress;C:unknown;PMO O.I. C.G. H.G.
35.1 99.7 18.0 At2g33350 817898 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA O.I. C.G. H.G.
34.6 99.7 9.7 At5g29020 833029 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.5 99.7 15.0 At1g24640 3766791 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
34.3 99.7 12.1 At2g33720 817937 transcription factor F:transcription factor activity;P:unknown;C:chloroplast;P O.I. C.G. H.G.
34.0 99.7 9.4 At3g13680 820576 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
33.9 99.7 7.6 At3g17260 3768760 transposable element gene F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
33.8 99.7 20.4 At5g15380 831390 DRM1 (domains rearranged methylase 1) Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences. O.I. C.G. H.G.
33.5 99.7 46.8 At1g32290 840121 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
33.4 99.7 16.4 At2g37780 818355 DC1 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
3420.2	100.0	973.2	At4g19400	827681	actin binding	F:actin binding;P:cytoskeleton organization;C:actin cytoskeleton;PO	O.I.	C.G.	H.G.
3214.9	100.0	581.5	At2g38880	818472	NF-YB1 (NUCLEAR FACTOR Y, SUBUNIT B1)	Encodes a transcription factor from the nuclear factor Y (NF-Y) family, AtNF-YB1. Confers drought tolerance.	O.I.	C.G.	H.G.
2889.4	100.0	770.1	At1g07970	837312	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFOB	O.I.	C.G.	H.G.
2692.9	100.0	608.6	At4g24700	828572	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1425.1	100.0	146.4	At1g15080	838072	LPP2 (LIPID PHOSPHATE PHOSPHATASE 2)	Encodes phosphatidic acid phosphatase. Involved in ABA signaling. Functions as a negative regulator upstream of ABI4. Expressed during germination and seed development. Expressed overall in young seedlings, in roots, hypocotyls, and vascular cells of cotyledons and leaves of 10 day-old seedlings, in flower filaments and stem elongation zones. Not expressed in anthers, pollen nor petals.	O.I.	C.G.	H.G.
1408.7	100.0	802.4	At3g06790	819864	plastid developmental protein DAG, putative	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
1131.8	100.0	312.1	At3g62330	825406	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
1129.6	100.0	353.5	At2g21195	816656	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1048.9	100.0	539.3	At3g03490	821248	PEX19-1 (peroxin 19-1)	F:molecular_function unknown;P:peroxisome organization;C:peroxisome;MFOBPA	O.I.	C.G.	H.G.
985.3	100.0	323.4	At5g18570	831975	GTP1/OBG family protein	F:GTP binding, nucleotide binding;P:unknown;C:intracellular, chloroplast;BOMFAPV	O.I.	C.G.	H.G.
817.7	100.0	1669.6	At5g32450	833204	RNA recognition motif (RRM)-containing protein	F:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;PFMO	O.I.	C.G.	H.G.
777.2	100.0	541.2	At2g36990	818273	SIGF (RNA POLYMERASE SIGMA-SUBUNIT F)	Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons.	O.I.	C.G.	H.G.
762.5	100.0	62.0	At1g49530	841377	GGPS6 (geranylgeranyl pyrophosphate synthase 6)	encodes a mitochondria-targeted geranylgeranyl pyrophosphate synthase	O.I.	C.G.	H.G.
719.3	100.0	484.4	At2g20740	816603	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system, integral to membrane;PO	O.I.	C.G.	H.G.
707.7	100.0	853.5	At5g24400	832511	emb2024 (embryo defective 2024)	F:6-phosphogluconolactonase activity, catalytic activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:peroxisome, chloroplast stroma, chloroplast;BOMFP	O.I.	C.G.	H.G.
695.2	100.0	34.6	At3g42090	823180	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
679.2	100.0	123.7	At4g01570	828133	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFMBA	O.I.	C.G.	H.G.
540.9	100.0	453.7	At4g38890	830044	dihydrouridine synthase family protein	F:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPA	O.I.	C.G.	H.G.
492.5	100.0	547.2	At5g08180	830714	ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	F:RNA binding;P:ribosome biogenesis;C:nucleolus;MOFAP	O.I.	C.G.	H.G.
456.6	100.0	282.3	At3g13940	820607	DNA binding / DNA-directed RNA polymerase	F:DNA-directed RNA polymerase activity, DNA binding;P:transcription;C:nucleus;FMPOB	O.I.	C.G.	H.G.
389.3	100.0	144.9	At5g05480	830431	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:vacuole;FPABO	O.I.	C.G.	H.G.
293.7	100.0	148.0	At1g45170	841085	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
253.9	100.0	166.6	At3g07400	819928	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:cellular_component unknown;PFOMB	O.I.	C.G.	H.G.
253.3	100.0	301.7	At1g80280	844368	hydrolase, alpha/beta fold family protein	F:hydrolase activity;P:unknown;C:unknown;BOPMFA	O.I.	C.G.	H.G.
212.3	100.0	248.9	At4g20170	827763	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PMBOF	O.I.	C.G.	H.G.
145.2	99.9	111.7	At5g14610	831313	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding / protein binding	F:protein binding, helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:unknown;C:cellular_component unknown;BMOFPAV	O.I.	C.G.	H.G.
140.3	99.9	970.4	At1g51650	841590	ATP synthase epsilon chain, mitochondrial	F:hydrogen ion transporting ATP synthase activity, rotational mechanism, proton-transporting ATPase activity, rotational mechanism;P:ATP biosynthetic process, ATP synthesis coupled proton transport;C:mitochondrion;MPOF	O.I.	C.G.	H.G.
136.2	99.9	1550.9	At3g56340	824801	40S ribosomal protein S26 (RPS26C)	F:structural constituent of ribosome;P:translation, ribosome biogenesis;C:cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane;MFOPA	O.I.	C.G.	H.G.
129.7	99.9	669.9	At5g08300	830726	succinyl-CoA ligase (GDP-forming) alpha-chain, mitochondrial, putative / succinyl-CoA synthetase, alpha chain, putative / SCS-alpha, putative	F:succinate-CoA ligase (GDP-forming) activity, metal ion binding;P:response to cadmium ion, metabolic process;C:mitochondrion, cell wall;OBMAFP	O.I.	C.G.	H.G.
100.8	99.9	7.4	At1g39430	840698	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
96.9	99.9	18.0	At2g40580	818653	protein kinase family protein	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MOPFBVA	O.I.	C.G.	H.G.
92.1	99.9	346.1	At1g79750	844314	ATNADP-ME4 (NADP-malic enzyme 4)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME4 is localized to chloroplasts. The gene is expressed throughout the whole plant and during embryogenesis and germination. A possible involvement in the fatty acid biosynthesis has been proposed.	O.I.	C.G.	H.G.
84.0	99.9	11.0	At5g45180	834554	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOFMP	O.I.	C.G.	H.G.
80.0	99.9	16.5	At5g49380	834998	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOP	O.I.	C.G.	H.G.
78.6	99.9	15.6	At4g27220	828830	disease resistance protein (NBS-LRR class), putative	F:protein binding, ATP binding;P:defense response, apoptosis;C:unknown;PMBOFA	O.I.	C.G.	H.G.
78.1	99.9	40.9	At2g16340	816130	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMFOPAV	O.I.	C.G.	H.G.
78.0	99.9	9.9	At2g17860	816296	pathogenesis-related thaumatin family protein	F:molecular_function unknown;P:response to other organism;C:endomembrane system;PMFBOV	O.I.	C.G.	H.G.
76.0	99.9	360.7	At5g62740	836395	band 7 family protein	F:unknown;P:N-terminal protein myristoylation;C:plasma membrane, vacuole, membrane;BOMFPAV	O.I.	C.G.	H.G.
74.3	99.9	8.2	At1g41900	840803	transposable element gene	pseudogene of myosin heavy chain-related	O.I.	C.G.	H.G.
71.5	99.9	7.7	At3g30310	822731	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
67.1	99.8	20.5	At3g19160	821450	ATIPT8 (ATP/ADP ISOPENTENYLTRANSFERASES)	Encodes cytokinin synthase.	O.I.	C.G.	H.G.
66.4	99.8	20.0	At3g30230	822723	myosin heavy chain-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFBAV	O.I.	C.G.	H.G.
64.9	99.8	3.5	At3g29732	3769027	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
63.4	99.8	14.4	At5g02920	831396	ubiquitin-protein ligase	F:ubiquitin-protein ligase activity;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;PMFO	O.I.	C.G.	H.G.
60.3	99.8	13.6	At2g03770	814904	sulfotransferase family protein	F:sulfotransferase activity;P:unknown;C:unknown;MOPBF	O.I.	C.G.	H.G.
60.0	99.8	10.5	At5g65130	836637	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
59.5	99.8	11.5	At3g42460	823249	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
56.6	99.8	9.2	At2g23230	816855	terpene synthase/cyclase family protein	F:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;PO	O.I.	C.G.	H.G.
56.3	99.8	1083.3	At1g75950	843928	SKP1 (S PHASE KINASE-ASSOCIATED PROTEIN 1)	SKP1 is core component of the SCF family of E3 ubiquitin ligases and serves to tether the rest of the complex to an F-box protein, which provides specificity in binding to ubiquitin ligase substrate proteins. Predominately expressed from leptotene to pachytene. Negatively regulates recombination. Interacts with P0, a silencing suppressor protein encoded by poleroviruses by means of a conserved minimal F-box motif.	O.I.	C.G.	H.G.
53.6	99.8	9.7	At2g14450	815933	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.5	99.8	48.3	At1g65240	842831	aspartyl protease family protein	F:aspartic-type endopeptidase activity;P:proteolysis;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PMFO	O.I.	C.G.	H.G.
52.4	99.8	14.2	At4g04130	825725	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
52.2	99.8	6.1	At1g39350	840697	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
51.1	99.8	33.8	At3g50540	824218	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
49.0	99.8	10.9	At3g22020	821762	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.6	99.8	10.2	At2g45350	819143	CRR4 (CHLORORESPIRATORY REDUCTION 4)	Encodes a member of a PCMP (plant combinatorial and modular protein) family (PCMP-E subfamily) with 11 pentatricopeptide (PPR) repeats. The protein is involved in RNA editing of the initiation codon of ndhD in the chloroplast.	O.I.	C.G.	H.G.
48.3	99.8	142.3	At4g15630	827240	integral membrane family protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
47.9	99.8	11.9	At5g18350	831953	ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding / transmembrane receptor	F:transmembrane receptor activity, protein binding, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane;PMBOFAV	O.I.	C.G.	H.G.
47.2	99.8	16.3	At4g36105	829767	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:nucleus;MPOBFV	O.I.	C.G.	H.G.
46.5	99.8	2299.0	At3g04400	819595	emb2171 (embryo defective 2171)	F:structural constituent of ribosome;P:embryonic development ending in seed dormancy, translation;C:cytosolic large ribosomal subunit, ribosome;BOPMAF	O.I.	C.G.	H.G.
46.0	99.8	9.5	At2g13630	815848	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
45.3	99.8	6.6	At2g12920	3768702	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
45.2	99.8	18.1	At5g62830	836404	F-box family protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
44.5	99.8	15.0	At1g01690	839243	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MBOPFA	O.I.	C.G.	H.G.
43.9	99.8	17.2	At2g05600	815109	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
43.7	99.8	11.5	At3g20400	821585	EMB2743 (EMBRYO DEFECTIVE 2743)	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;P	O.I.	C.G.	H.G.
43.0	99.8	13.3	At5g57570	835861	-	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
42.7	99.8	15.8	At1g23690	838979	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
42.4	99.8	12.8	At3g42550	823265	aspartic-type endopeptidase	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PMFO	O.I.	C.G.	H.G.
42.2	99.8	8.3	At3g62440	825417	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
42.0	99.8	20.1	At2g15510	3768657	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
42.0	99.8	16.7	At1g05550	837057	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
41.8	99.8	11.4	At4g17200	827431	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
40.2	99.8	13.4	At5g37280	833702	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
40.1	99.8	11.2	At5g01070	831898	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
39.7	99.8	9.0	At1g70040	843341	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
39.5	99.8	22.1	At2g34555	818019	ATGA2OX3 (gibberellin 2-oxidase 3)	F:gibberellin 2-beta-dioxygenase activity;P:gibberellin catabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
39.0	99.8	12.3	At4g01760	828215	DC1 domain-containing protein	F:protein binding, zinc ion binding;P:intracellular signaling cascade;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
38.1	99.8	25.5	At5g27910	832857	NF-YC8 (NUCLEAR FACTOR Y, SUBUNIT C8)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus, intracellular;MPFO	O.I.	C.G.	H.G.
37.9	99.8	27.9	At1g29230	839797	CIPK18 (CBL-INTERACTING PROTEIN KINASE 18)	Encodes a member of the SNF1-related kinase (SnRK) gene family (SnRK3.20), which has also been reported as a member of the CBL-interacting protein kinases (CIPK18).	O.I.	C.G.	H.G.
37.9	99.8	9.0	At1g34545	3766918	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
37.1	99.7	12.1	At3g61120	825284	AGL13 (AGAMOUS-LIKE 13)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
36.5	99.7	16.3	At5g44850	834515	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
36.4	99.7	12.3	At4g11940	826801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.2	99.7	10.2	At2g07490	3768135	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
36.1	99.7	8.0	At3g16880	820943	F-box protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
35.7	99.7	16.0	At2g34360	817999	antiporter/ drug transporter/ transporter	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAM	O.I.	C.G.	H.G.
35.6	99.7	11.8	At2g04820	3768606	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
35.5	99.7	14.4	At2g27410	817286	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
35.2	99.7	1051.4	At1g07770	837291	RPS15A (ribosomal protein s15a)	Encodes cytoplasmic ribosomal protein S15a.	O.I.	C.G.	H.G.
35.2	99.7	131.9	At1g44760	841040	universal stress protein (USP) family protein	F:molecular_function unknown;P:response to stress;C:unknown;PMO	O.I.	C.G.	H.G.
35.1	99.7	18.0	At2g33350	817898	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBA	O.I.	C.G.	H.G.
34.6	99.7	9.7	At5g29020	833029	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.5	99.7	15.0	At1g24640	3766791	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
34.3	99.7	12.1	At2g33720	817937	transcription factor	F:transcription factor activity;P:unknown;C:chloroplast;P	O.I.	C.G.	H.G.
34.0	99.7	9.4	At3g13680	820576	F-box family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.9	99.7	7.6	At3g17260	3768760	transposable element gene	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
33.8	99.7	20.4	At5g15380	831390	DRM1 (domains rearranged methylase 1)	Encodes methyltransferase involved in the de novo DNA methylation and maintenance of asymmetric methylation of DNA sequences.	O.I.	C.G.	H.G.
33.5	99.7	46.8	At1g32290	840121	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
33.4	99.7	16.4	At2g37780	818355	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.

Back to the CoP portal site

Back to the KAGIANA project homepage

GSM ID	GSM133757
Assay name	Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133757 Assay name Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133757

Assay name Lindsey_1-8_heart-stage-cotyledon_Rep2_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues