CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133756

Assay name Lindsey_1-10_heart-stage-root_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
1222.8 100.0 162.3 At1g50000 841424 methyltransferase F:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPM O.I. C.G. H.G.
919.8 100.0 62.2 At5g37140 833686 tRNA-splicing endonuclease positive effector-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV O.I. C.G. H.G.
756.2 100.0 81.7 At3g50870 824251 MNP (MONOPOLE) mutant has Embryo defect; GATA Factor Transcriptional Regulator O.I. C.G. H.G.
692.9 100.0 152.3 At3g57180 824885 GTP binding F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA O.I. C.G. H.G.
566.4 100.0 316.6 At3g44490 823574 hda17 (histone deacetylase 17) F:histone deacetylase activity;P:histone deacetylation;C:nucleus;MFOP O.I. C.G. H.G.
534.9 100.0 194.1 At3g15720 820815 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV O.I. C.G. H.G.
506.6 100.0 141.0 At5g50110 835075 - F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPM O.I. C.G. H.G.
504.0 100.0 223.5 At4g17350 827447 phosphoinositide binding F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO O.I. C.G. H.G.
459.8 100.0 78.6 At3g19300 821464 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
448.5 100.0 198.1 At3g55760 824742 unknown protein F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB O.I. C.G. H.G.
394.2 100.0 146.9 At5g55250 835618 IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1) Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D. O.I. C.G. H.G.
385.4 100.0 188.3 At3g18520 821382 HDA15 Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation. O.I. C.G. H.G.
368.0 100.0 253.0 At1g04645 839459 self-incompatibility protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
310.7 100.0 154.8 At3g42660 823286 nucleotide binding F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV O.I. C.G. H.G.
304.4 100.0 124.3 At2g01630 814692 glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
294.9 100.0 97.2 At2g42110 818811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
294.5 100.0 111.9 At2g32590 817819 - F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV O.I. C.G. H.G.
290.5 100.0 58.1 At4g32450 829380 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:mitochondrion;POFM O.I. C.G. H.G.
269.5 100.0 113.1 At2g07170 815286 binding F:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMA O.I. C.G. H.G.
267.8 100.0 698.6 At4g28190 828934 ULT1 (ULTRAPETALA1) Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. O.I. C.G. H.G.
266.3 100.0 215.9 At4g37270 829881 HMA1 Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions. O.I. C.G. H.G.
248.8 100.0 292.1 At1g63100 842613 scarecrow transcription factor family protein F:transcription factor activity;P:regulation of transcription;C:unknown;POMB O.I. C.G. H.G.
245.1 100.0 50.3 At1g61500 842444 S-locus protein kinase, putative F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
244.4 100.0 52.8 At1g10750 837618 unknown protein F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB O.I. C.G. H.G.
227.6 100.0 445.2 At1g74260 843766 PUR4 (purine biosynthesis 4) Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development. O.I. C.G. H.G.
223.3 100.0 79.1 At3g01380 821231 catalytic/ transferase F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endoplasmic reticulum;MFOPB O.I. C.G. H.G.
222.0 100.0 80.6 At3g03360 821272 F-box family protein F:unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
220.0 100.0 102.5 At5g39250 833921 F-box family protein F:molecular_function unknown;P:unknown;C:unknown;PMO O.I. C.G. H.G.
219.1 100.0 25.5 At3g58590 825028 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB O.I. C.G. H.G.
210.9 100.0 394.3 At4g08350 826391 GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2) F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA O.I. C.G. H.G.
200.5 100.0 54.9 At2g03280 814857 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
199.6 100.0 26.1 At1g12620 837818 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POMFBA O.I. C.G. H.G.
194.2 100.0 50.9 At5g48950 834953 thioesterase family protein F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP O.I. C.G. H.G.
193.6 100.0 215.5 At1g53290 841763 galactosyltransferase family protein F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB O.I. C.G. H.G.
185.7 100.0 72.0 At5g06590 830547 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
175.5 100.0 497.7 At5g24660 832538 LSU2 (RESPONSE TO LOW SULFUR 2) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
171.4 100.0 75.6 At4g29240 829045 leucine-rich repeat family protein / extensin family protein F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
169.3 100.0 130.0 At2g38620 818444 CDKB1 Encodes a member of a plant specific family of cyclin dependent kinases. O.I. C.G. H.G.
166.9 100.0 29.9 At1g32740 840168 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB O.I. C.G. H.G.
164.9 100.0 114.7 At1g21090 838705 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:anchored to membrane;PMFOB O.I. C.G. H.G.
164.1 99.9 129.2 At3g21110 821663 PUR7 (PURIN 7) 5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone. O.I. C.G. H.G.
161.4 99.9 48.0 At5g24330 832503 ATXR6 Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression. O.I. C.G. H.G.
159.2 99.9 117.0 At3g16620 820913 ATTOC120 component of TOC complex, plastid protein import machinery. O.I. C.G. H.G.
158.8 99.9 86.1 At1g04020 839329 BARD1 (BREAST CANCER ASSOCIATED RING 1) Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein�protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression. O.I. C.G. H.G.
156.2 99.9 30.0 At1g35625 840462 peptidase/ protein binding / zinc ion binding F:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
156.1 99.9 64.2 At5g66130 836745 ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE) Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths. O.I. C.G. H.G.
155.8 99.9 138.3 At1g66250 842942 glycosyl hydrolase family 17 protein F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO O.I. C.G. H.G.
147.1 99.9 144.9 At4g16430 827337 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO O.I. C.G. H.G.
146.0 99.9 224.0 At1g71691 843496 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM O.I. C.G. H.G.
145.7 99.9 35.4 At5g17430 831609 BBM (BABY BOOM) Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium. O.I. C.G. H.G.
144.6 99.9 58.4 At4g27240 828832 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO O.I. C.G. H.G.
143.6 99.9 130.7 At5g64550 836576 loricrin-related F:molecular_function unknown;P:unknown;C:unknown;MPOBFV O.I. C.G. H.G.
142.9 99.9 52.1 At5g02010 831858 ROPGEF7 Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily. O.I. C.G. H.G.
139.9 99.9 486.1 At5g38160 833796 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
139.0 99.9 204.1 At3g21090 821661 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV O.I. C.G. H.G.
138.7 99.9 86.9 At5g51770 835251 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA O.I. C.G. H.G.
137.1 99.9 188.7 At1g72340 843566 eukaryotic translation initiation factor 2B family protein / eIF-2B family protein F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP O.I. C.G. H.G.
133.4 99.9 316.4 At2g34700 818035 pollen Ole e 1 allergen and extensin family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
130.7 99.9 63.4 At5g47360 834783 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:unknown;C:unknown;POMFBA O.I. C.G. H.G.
124.5 99.9 116.3 At5g11690 831041 ATTIM17-3 mitochondrial inner membrane translocase O.I. C.G. H.G.
121.7 99.9 111.7 At4g12760 826888 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO O.I. C.G. H.G.
121.3 99.9 316.7 At3g28730 822505 ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP) encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1 O.I. C.G. H.G.
119.0 99.9 50.9 At5g41850 834190 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPF O.I. C.G. H.G.
115.2 99.9 165.5 At5g18590 831977 kelch repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV O.I. C.G. H.G.
109.8 99.9 43.1 At3g27330 822354 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV O.I. C.G. H.G.
109.4 99.9 43.1 At3g12060 820380 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM O.I. C.G. H.G.
109.1 99.9 78.3 At4g37490 829904 CYCB1 Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20. O.I. C.G. H.G.
108.6 99.9 23.1 At1g06800 837191 lipase class 3 family protein F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV O.I. C.G. H.G.
107.8 99.9 64.5 At2g22640 816795 BRK1 (BRICK1) Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2. O.I. C.G. H.G.
106.9 99.9 115.1 At5g17620 831628 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO O.I. C.G. H.G.
106.0 99.9 56.8 At3g58540 825023 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
105.8 99.9 443.4 At1g80070 844347 SUS2 (ABNORMAL SUSPENSOR 2) a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality. O.I. C.G. H.G.
105.5 99.9 100.6 At1g10540 837595 xanthine/uracil permease family protein F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV O.I. C.G. H.G.
103.9 99.9 593.7 At5g13000 831140 ATGSL12 (glucan synthase-like 12) encodes a gene similar to callose synthase O.I. C.G. H.G.
101.4 99.9 120.9 At1g47240 841127 NRAMP2 Member of the NRAMP2 gene family of metal ion transporters. O.I. C.G. H.G.
101.3 99.9 84.4 At2g30130 817565 ASL5 Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression. O.I. C.G. H.G.
99.0 99.9 92.7 At1g63440 842650 HMA5 (HEAVY METAL ATPASE 5) The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed. O.I. C.G. H.G.
98.5 99.9 32.2 At5g24630 832534 BIN4 (brassinosteroid-insensitive4) This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells. O.I. C.G. H.G.
98.4 99.9 54.4 At5g51910 835266 TCP family transcription factor, putative F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
96.0 99.9 59.0 At5g01370 831905 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV O.I. C.G. H.G.
94.8 99.9 430.8 At1g18250 838405 ATLP-1 encodes a thaumatin-like protein O.I. C.G. H.G.
93.4 99.9 65.8 At1g29270 839801 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
93.0 99.9 186.1 At3g10940 820265 protein phosphatase-related F:phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:chloroplast;MOPFVBA O.I. C.G. H.G.
93.0 99.9 86.5 At4g10620 826654 - F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA O.I. C.G. H.G.
92.7 99.9 64.6 At5g47630 834813 mtACP3 (mitochondrial acyl carrier protein 3) Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis. O.I. C.G. H.G.
89.9 99.9 81.4 At5g24950 832565 CYP71A15 putative cytochrome P450 O.I. C.G. H.G.
87.4 99.9 80.5 At5g47455 834795 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
86.6 99.9 729.0 At5g38170 833797 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
84.6 99.9 236.5 At1g02160 839554 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM O.I. C.G. H.G.
84.6 99.9 151.0 At1g13690 837930 ATE1 AtE1 - stimulates the ATPase activity of DnaK/DnaJ O.I. C.G. H.G.
82.2 99.9 47.5 At1g05410 837042 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM O.I. C.G. H.G.
82.2 99.9 27.9 At5g41620 834164 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;OMBFPA O.I. C.G. H.G.
81.1 99.9 69.2 At1g53140 841748 dynamin family protein Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis. O.I. C.G. H.G.
80.4 99.9 107.2 At1g32360 840128 zinc finger (CCCH-type) family protein F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA O.I. C.G. H.G.
80.3 99.9 91.6 At5g38110 833791 ASF1B (ANTI- SILENCING FUNCTION 1B) This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation. O.I. C.G. H.G.
79.7 99.9 87.7 At1g49710 841394 FUT12 (FUCOSYLTRANSFERASE 12) Encodes a protein with core α1,3-fucosyltransferase activity. O.I. C.G. H.G.
78.7 99.9 174.4 At1g53520 841787 chalcone-flavanone isomerase-related F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBF O.I. C.G. H.G.
78.4 99.9 83.8 At5g37010 833671 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA O.I. C.G. H.G.
78.0 99.9 58.6 At2g02880 814819 mucin-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB O.I. C.G. H.G.
75.9 99.9 72.2 At2g25270 817065 unknown protein F:unknown;P:unknown;C:plasma membrane;POBM O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
1222.8	100.0	162.3	At1g50000	841424	methyltransferase	F:methyltransferase activity;P:rRNA processing;C:chloroplast;BOPM	O.I.	C.G.	H.G.
919.8	100.0	62.2	At5g37140	833686	tRNA-splicing endonuclease positive effector-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MBFOPAV	O.I.	C.G.	H.G.
756.2	100.0	81.7	At3g50870	824251	MNP (MONOPOLE)	mutant has Embryo defect; GATA Factor Transcriptional Regulator	O.I.	C.G.	H.G.
692.9	100.0	152.3	At3g57180	824885	GTP binding	F:GTP binding;P:biological_process unknown;C:chloroplast;MOBFPVA	O.I.	C.G.	H.G.
566.4	100.0	316.6	At3g44490	823574	hda17 (histone deacetylase 17)	F:histone deacetylase activity;P:histone deacetylation;C:nucleus;MFOP	O.I.	C.G.	H.G.
534.9	100.0	194.1	At3g15720	820815	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	F:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:anchored to plasma membrane, anchored to membrane, plant-type cell wall;FPBOMAV	O.I.	C.G.	H.G.
506.6	100.0	141.0	At5g50110	835075	-	F:molecular_function unknown;P:cell cycle;C:cellular_component unknown;BOPM	O.I.	C.G.	H.G.
504.0	100.0	223.5	At4g17350	827447	phosphoinositide binding	F:phosphoinositide binding;P:signal transduction;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
459.8	100.0	78.6	At3g19300	821464	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
448.5	100.0	198.1	At3g55760	824742	unknown protein	F:unknown;P:unknown;C:chloroplast stroma, chloroplast;POMFB	O.I.	C.G.	H.G.
394.2	100.0	146.9	At5g55250	835618	IAMT1 (IAA CARBOXYLMETHYLTRANSFERASE 1)	Encodes an enzyme which specifically converts IAA to its methyl ester form MelIAA. This gene belongs to the family of carboxyl methyltransferases whose members catalyze the transfer of the methyl group from S-adenosyl-L-methionine to carboxylic acid-containing substrates to form small molecule methyl esters. Expression of TCP genes is downregulated in mutant iamt1-D.	O.I.	C.G.	H.G.
385.4	100.0	188.3	At3g18520	821382	HDA15	Encodes a protein with similarity to histone deacetylases. Plants expressing RNAi directed against this gene show a moderate resistance to agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
368.0	100.0	253.0	At1g04645	839459	self-incompatibility protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
310.7	100.0	154.8	At3g42660	823286	nucleotide binding	F:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MFBOPAV	O.I.	C.G.	H.G.
304.4	100.0	124.3	At2g01630	814692	glycosyl hydrolase family 17 protein / beta-1,3-glucanase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
294.9	100.0	97.2	At2g42110	818811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
294.5	100.0	111.9	At2g32590	817819	-	F:unknown;P:mitosis, mitotic cell cycle;C:nucleus, chloroplast;MFOPV	O.I.	C.G.	H.G.
290.5	100.0	58.1	At4g32450	829380	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:mitochondrion;POFM	O.I.	C.G.	H.G.
269.5	100.0	113.1	At2g07170	815286	binding	F:binding;P:biological_process unknown;C:cellular_component unknown;PFBOMA	O.I.	C.G.	H.G.
267.8	100.0	698.6	At4g28190	828934	ULT1 (ULTRAPETALA1)	Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy.	O.I.	C.G.	H.G.
266.3	100.0	215.9	At4g37270	829881	HMA1	Encodes a P1B-type ATPases that is localized to the chloroplast envelope and is involved in the transport of Cu into chloroplasts. It is essential for growth under high light conditions.	O.I.	C.G.	H.G.
248.8	100.0	292.1	At1g63100	842613	scarecrow transcription factor family protein	F:transcription factor activity;P:regulation of transcription;C:unknown;POMB	O.I.	C.G.	H.G.
245.1	100.0	50.3	At1g61500	842444	S-locus protein kinase, putative	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
244.4	100.0	52.8	At1g10750	837618	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:unknown;PFB	O.I.	C.G.	H.G.
227.6	100.0	445.2	At1g74260	843766	PUR4 (purine biosynthesis 4)	Encodes formylglycinamidine ribonucleotide synthase an enzyme involved in de novo purine biosynthesis. PUR4 is localizes to the chloroplast and mitochondria. Loss of PUR4 function affects male but not female gametophyte development.	O.I.	C.G.	H.G.
223.3	100.0	79.1	At3g01380	821231	catalytic/ transferase	F:transferase activity, catalytic activity;P:GPI anchor biosynthetic process, metabolic process;C:endoplasmic reticulum;MFOPB	O.I.	C.G.	H.G.
222.0	100.0	80.6	At3g03360	821272	F-box family protein	F:unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
220.0	100.0	102.5	At5g39250	833921	F-box family protein	F:molecular_function unknown;P:unknown;C:unknown;PMO	O.I.	C.G.	H.G.
219.1	100.0	25.5	At3g58590	825028	pentatricopeptide (PPR) repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB	O.I.	C.G.	H.G.
210.9	100.0	394.3	At4g08350	826391	GTA2 (GLOBAL TRANSCRIPTION FACTOR GROUP A2)	F:transcription elongation regulator activity, structural constituent of ribosome, transcription factor activity;P:translation, regulation of transcription from RNA polymerase II promoter, positive regulation of RNA elongation from RNA polymerase II promoter;C:ribosome, intracellular;MOFPBVA	O.I.	C.G.	H.G.
200.5	100.0	54.9	At2g03280	814857	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
199.6	100.0	26.1	At1g12620	837818	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
194.2	100.0	50.9	At5g48950	834953	thioesterase family protein	F:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOP	O.I.	C.G.	H.G.
193.6	100.0	215.5	At1g53290	841763	galactosyltransferase family protein	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:protein amino acid glycosylation;C:membrane;MPOB	O.I.	C.G.	H.G.
185.7	100.0	72.0	At5g06590	830547	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
175.5	100.0	497.7	At5g24660	832538	LSU2 (RESPONSE TO LOW SULFUR 2)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
171.4	100.0	75.6	At4g29240	829045	leucine-rich repeat family protein / extensin family protein	F:protein binding;P:biological_process unknown;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
169.3	100.0	130.0	At2g38620	818444	CDKB1	Encodes a member of a plant specific family of cyclin dependent kinases.	O.I.	C.G.	H.G.
166.9	100.0	29.9	At1g32740	840168	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOFVB	O.I.	C.G.	H.G.
164.9	100.0	114.7	At1g21090	838705	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:anchored to membrane;PMFOB	O.I.	C.G.	H.G.
164.1	99.9	129.2	At3g21110	821663	PUR7 (PURIN 7)	5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole synthetase (PUR7, syn. SAICAR synthetase), catalyzes aspartate addition at the alpha-amino group to the growing purine backbone.	O.I.	C.G.	H.G.
161.4	99.9	48.0	At5g24330	832503	ATXR6	Encodes a SET-domain protein. Contains a PCNA-binding domain. ATXR6 accumulates preferentially during the late G1 or S phase, suggesting that it plays a role in cell-cycle regulation or progression.	O.I.	C.G.	H.G.
159.2	99.9	117.0	At3g16620	820913	ATTOC120	component of TOC complex, plastid protein import machinery.	O.I.	C.G.	H.G.
158.8	99.9	86.1	At1g04020	839329	BARD1 (BREAST CANCER ASSOCIATED RING 1)	Encodes a protein containing two tandem BRCA1 C-Terminal (BRCT) domains, which function in phosphorylation-dependent protein�protein interactions.Loss of function mutations cause defects in meristem organization due to failure to repress WUS. BARD1 binds to WUS promoter and over expression of BARD reduces the extent of WUS expression.	O.I.	C.G.	H.G.
156.2	99.9	30.0	At1g35625	840462	peptidase/ protein binding / zinc ion binding	F:peptidase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
156.1	99.9	64.2	At5g66130	836745	ATRAD17 (ARABIDOPSIS THALIANA RADIATION SENSITIVE)	Encodes a homolog to yeast RAD17. Involved in the regulation of DNA damage repair and homologous recombination. Mutant has increased sensitivity to MMS and increased telomere lengths.	O.I.	C.G.	H.G.
155.8	99.9	138.3	At1g66250	842942	glycosyl hydrolase family 17 protein	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PFO	O.I.	C.G.	H.G.
147.1	99.9	144.9	At4g16430	827337	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFO	O.I.	C.G.	H.G.
146.0	99.9	224.0	At1g71691	843496	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:unknown;PBFOM	O.I.	C.G.	H.G.
145.7	99.9	35.4	At5g17430	831609	BBM (BABY BOOM)	Encodes an AP2-domain containing protein similar to ANT. Expressed in embryos and lateral root primordium.	O.I.	C.G.	H.G.
144.6	99.9	58.4	At4g27240	828832	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PFO	O.I.	C.G.	H.G.
143.6	99.9	130.7	At5g64550	836576	loricrin-related	F:molecular_function unknown;P:unknown;C:unknown;MPOBFV	O.I.	C.G.	H.G.
142.9	99.9	52.1	At5g02010	831858	ROPGEF7	Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.	O.I.	C.G.	H.G.
139.9	99.9	486.1	At5g38160	833796	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
139.0	99.9	204.1	At3g21090	821661	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:membrane;BOMFAPV	O.I.	C.G.	H.G.
138.7	99.9	86.9	At5g51770	835251	protein kinase family protein	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBVA	O.I.	C.G.	H.G.
137.1	99.9	188.7	At1g72340	843566	eukaryotic translation initiation factor 2B family protein / eIF-2B family protein	F:GTP binding, translation initiation factor activity;P:translational initiation, cellular metabolic process;C:eukaryotic translation initiation factor 2B complex;OBMFAP	O.I.	C.G.	H.G.
133.4	99.9	316.4	At2g34700	818035	pollen Ole e 1 allergen and extensin family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
130.7	99.9	63.4	At5g47360	834783	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:unknown;C:unknown;POMFBA	O.I.	C.G.	H.G.
124.5	99.9	116.3	At5g11690	831041	ATTIM17-3	mitochondrial inner membrane translocase	O.I.	C.G.	H.G.
121.7	99.9	111.7	At4g12760	826888	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	O.I.	C.G.	H.G.
121.3	99.9	316.7	At3g28730	822505	ATHMG (ARABIDOPSIS THALIANA HIGH MOBILITY GROUP)	encodes a component of the FAcilitates Chromatin Transcription (FACT) complex, SSRP1	O.I.	C.G.	H.G.
119.0	99.9	50.9	At5g41850	834190	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BMOPF	O.I.	C.G.	H.G.
115.2	99.9	165.5	At5g18590	831977	kelch repeat-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol;MOPFBAV	O.I.	C.G.	H.G.
109.8	99.9	43.1	At3g27330	822354	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
109.4	99.9	43.1	At3g12060	820380	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;PBM	O.I.	C.G.	H.G.
109.1	99.9	78.3	At4g37490	829904	CYCB1	Cyclin-dependent protein kinase CYCB1;1. Functions as an effector of growth control at G2/M. Regulated by TCP20.	O.I.	C.G.	H.G.
108.6	99.9	23.1	At1g06800	837191	lipase class 3 family protein	F:triacylglycerol lipase activity;P:lipid metabolic process;C:chloroplast;PFOBMV	O.I.	C.G.	H.G.
107.8	99.9	64.5	At2g22640	816795	BRK1 (BRICK1)	Component of the WAVE protein complex which act as activators of ARP2/3 complex involved in actin nucleation. Required for trichome morphogenesis. Required for accumulation of SCAR1 protein in vivo. Selectively stabilizes SCAR2.	O.I.	C.G.	H.G.
106.9	99.9	115.1	At5g17620	831628	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMO	O.I.	C.G.	H.G.
106.0	99.9	56.8	At3g58540	825023	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
105.8	99.9	443.4	At1g80070	844347	SUS2 (ABNORMAL SUSPENSOR 2)	a genetic locus involved in embryogenesis. Mutations in this locus result in an abnormal suspensor and embryo lethality.	O.I.	C.G.	H.G.
105.5	99.9	100.6	At1g10540	837595	xanthine/uracil permease family protein	F:transmembrane transporter activity;P:transport;C:membrane;BOMPFAV	O.I.	C.G.	H.G.
103.9	99.9	593.7	At5g13000	831140	ATGSL12 (glucan synthase-like 12)	encodes a gene similar to callose synthase	O.I.	C.G.	H.G.
101.4	99.9	120.9	At1g47240	841127	NRAMP2	Member of the NRAMP2 gene family of metal ion transporters.	O.I.	C.G.	H.G.
101.3	99.9	84.4	At2g30130	817565	ASL5	Overexpression/activation tagged allele has epinastic leaves, reduced apical dominance and is sterile. Gene is similar to asymmetric leaves (AS)/lateral organ boundary (LOB) genes which repress KNOX gene expression.	O.I.	C.G.	H.G.
99.0	99.9	92.7	At1g63440	842650	HMA5 (HEAVY METAL ATPASE 5)	The Arabidopsis P-type ATPase HMA5 is involved in Cu detoxification. hma5 mutant plants exhibit Cu hypersensitivity, which is especially dramatic in roots where HMA5 is mostly expressed.	O.I.	C.G.	H.G.
98.5	99.9	32.2	At5g24630	832534	BIN4 (brassinosteroid-insensitive4)	This gene is predicted to encode a protein that forms part of the topoisomerase VI complex. BIN4 is a nuclear-localized protein that can bind DNA. bin4 mutants are brassinolide-insensitive dwarves with severely reduced cell size in leaves, roots, and hypocotyls. Proper development of root hairs and trichomes is also disrupted in bin4 mutants and they have elevated levels of double strand breaks in their cotyledon cells.	O.I.	C.G.	H.G.
98.4	99.9	54.4	At5g51910	835266	TCP family transcription factor, putative	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
96.0	99.9	59.0	At5g01370	831905	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;OMFBPV	O.I.	C.G.	H.G.
94.8	99.9	430.8	At1g18250	838405	ATLP-1	encodes a thaumatin-like protein	O.I.	C.G.	H.G.
93.4	99.9	65.8	At1g29270	839801	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
93.0	99.9	186.1	At3g10940	820265	protein phosphatase-related	F:phosphatase activity, protein tyrosine/serine/threonine phosphatase activity;P:protein amino acid dephosphorylation, dephosphorylation;C:chloroplast;MOPFVBA	O.I.	C.G.	H.G.
93.0	99.9	86.5	At4g10620	826654	-	F:unknown;P:biological_process unknown;C:chloroplast;BMFOPA	O.I.	C.G.	H.G.
92.7	99.9	64.6	At5g47630	834813	mtACP3 (mitochondrial acyl carrier protein 3)	Encodes a member of the mitochondrial acyl carrier protein (ACP) family. Its role is currently obscure as it is weakly expressed and has not yet been identified by mitochondrial proteome analysis.	O.I.	C.G.	H.G.
89.9	99.9	81.4	At5g24950	832565	CYP71A15	putative cytochrome P450	O.I.	C.G.	H.G.
87.4	99.9	80.5	At5g47455	834795	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
86.6	99.9	729.0	At5g38170	833797	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
84.6	99.9	236.5	At1g02160	839554	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPM	O.I.	C.G.	H.G.
84.6	99.9	151.0	At1g13690	837930	ATE1	AtE1 - stimulates the ATPase activity of DnaK/DnaJ	O.I.	C.G.	H.G.
82.2	99.9	47.5	At1g05410	837042	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOM	O.I.	C.G.	H.G.
82.2	99.9	27.9	At5g41620	834164	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast, plasma membrane;OMBFPA	O.I.	C.G.	H.G.
81.1	99.9	69.2	At1g53140	841748	dynamin family protein	Encodes DRP5A, a dynamin protein involved in cytokinesis in Arabidopsis.	O.I.	C.G.	H.G.
80.4	99.9	107.2	At1g32360	840128	zinc finger (CCCH-type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:cellular_component unknown;MPBOFVA	O.I.	C.G.	H.G.
80.3	99.9	91.6	At5g38110	833791	ASF1B (ANTI- SILENCING FUNCTION 1B)	This gene is predicted to encode a silencing group A protein. Plant lines expressing RNAi constructs directed against SGA1 have reduced levels of agrobacterium-mediated root transformation.	O.I.	C.G.	H.G.
79.7	99.9	87.7	At1g49710	841394	FUT12 (FUCOSYLTRANSFERASE 12)	Encodes a protein with core α1,3-fucosyltransferase activity.	O.I.	C.G.	H.G.
78.7	99.9	174.4	At1g53520	841787	chalcone-flavanone isomerase-related	F:chalcone isomerase activity;P:flavonoid biosynthetic process;C:chloroplast stroma, chloroplast;POBF	O.I.	C.G.	H.G.
78.4	99.9	83.8	At5g37010	833671	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:unknown;MOFBPVA	O.I.	C.G.	H.G.
78.0	99.9	58.6	At2g02880	814819	mucin-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFMB	O.I.	C.G.	H.G.
75.9	99.9	72.2	At2g25270	817065	unknown protein	F:unknown;P:unknown;C:plasma membrane;POBM	O.I.	C.G.	H.G.

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GSM ID	GSM133756
Assay name	Lindsey_1-10_heart-stage-root_Rep1_ATH1
GSE experiment	GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

Microarray experiments to specifically-expressed genes

GSM ID GSM133756 Assay name Lindsey_1-10_heart-stage-root_Rep1_ATH1 GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues

GSM ID GSM133756

Assay name Lindsey_1-10_heart-stage-root_Rep1_ATH1

GSE experiment GSE5730: Transcriptional profiling of laser-capture micro-dissected embryonic tissues