Microarray experiments to specifically-expressed genes

GSM ID GSM133748
Assay name Turner_A-2-Turne-Mut-Top2_SLD
GSE experiment GSE5729: Role of COV in vascular patterning

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
80.799.989.3At5g48210834874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
64.699.887.1At1g30020839881unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
51.899.836.7At1g60060842300unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPFMBO.I.C.G.H.G.
47.099.8165.6At1g75910843924EXL4member of Lipase proteinsO.I.C.G.H.G.
44.499.859.5At4g14815827138protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
38.499.895.0At1g06260837137cysteine proteinase, putativeF:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
38.499.859.6At1g20120838601family II extracellular lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMAVO.I.C.G.H.G.
37.899.8146.8At5g62080836328protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
37.399.7132.4At3g25050822096XTH3 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 3)encodes a xyloglucan endotransglucosylase/hydrolase. Higher expression in flowers and in response to IAA treatment.O.I.C.G.H.G.
37.099.7198.4At3g51590824322LTP12 (LIPID TRANSFER PROTEIN 12)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The LTP12 promoter is active exclusively in the tapetum during the uninucleate microspore and bicellular pollen stages. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
33.199.7118.1At1g33430840236galactosyltransferase family proteinF:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:pollen exine formation;C:endomembrane system, membrane;MPOO.I.C.G.H.G.
31.999.754.7At5g16920831555-F:molecular_function unknown;P:unknown;C:endomembrane system;POO.I.C.G.H.G.
31.899.7377.3At1g66850843003protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
29.999.7388.8At3g15400820779ATA20Encodes a protein with novel repeat sequences and a glycine-rich domain which has a 53% identity to GRP1, a petunia glycine-rich cell wall protein.O.I.C.G.H.G.
28.899.7115.4At1g67990843127TSM1Encodes a tapetum-specific O-methyltransferase. In vitro enzyme assay indicated activity with caffeoyl-CoA, caffeoyl glucose, chlorogenic acid and polyamine conjugates. RNAi mutants had impaired silique development and seed setting.O.I.C.G.H.G.
28.599.7329.5At5g07550830648GRP19 (GLYCINE-RICH PROTEIN 19)member of Oleosin-like protein familyO.I.C.G.H.G.
28.499.7125.1At1g57750842150CYP96A15 (CYTOCHROME P450 96 A1)Encodes a CYP96A15, midchain alkane hydroxylase, involved in cuticular wax biosynthesis.O.I.C.G.H.G.
27.699.747.3At3g26125822212CYP86C2encodes a protein with cytochrome P450 domainO.I.C.G.H.G.
26.999.7106.6At4g20420827790tapetum-specific protein-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
26.999.746.7At1g62940842596ACOS5 (ACYL-COA SYNTHETASE 5)encodes an acyl-CoA synthetase, has in vitro activity towards medium- to long-chain fatty acids and their hydroxylated derivatives. Expressed in the tapetum. Involved in pollen wall exine formation. Null mutants were devoid of pollen grains at anther maturity and were completely male sterile.O.I.C.G.H.G.
25.799.771.3At4g37900829946glycine-rich proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BMPOFVAO.I.C.G.H.G.
24.999.670.6At3g52130824377protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
24.299.664.3At4g28395828956ATA7related to lipid transfer proteinsO.I.C.G.H.G.
22.799.613.2At1g06990837209GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.699.629.1At1g74550843796CYP98A9member of CYP98AO.I.C.G.H.G.
22.599.6130.2At1g68875843220unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
22.399.621.2At3g13220820512ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:membrane;BOMAFPVO.I.C.G.H.G.
22.299.626.5At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.199.6141.0At1g75940843927ATA27encodes a protein similar to the BGL4 beta-glucosidase from Brassica napus. The ATA27 protein is predicted to have an ER retention signal and an acidic isoelectric point, suggesting that it may be localized to the ER lumen.O.I.C.G.H.G.
22.199.657.8At1g02813839360unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
21.799.681.0At4g14080827044MEE48 (maternal effect embryo arrest 48)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:embryonic development ending in seed dormancy, pollen exine formation;C:endomembrane system;POO.I.C.G.H.G.
21.499.694.0At5g07230830614protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
19.999.6135.4At5g07560830649GRP20 (GLYCINE-RICH PROTEIN 20)Lipid-binding oleosins, glycine-rich protein.O.I.C.G.H.G.
19.899.622.3At3g06100819783NIP7F:water channel activity;P:transport;C:membrane;BPMOFAVO.I.C.G.H.G.
19.599.621.1At1g13150837873CYP86C4member of CYP86CO.I.C.G.H.G.
19.199.648.7At1g68540843183oxidoreductase family proteinF:coenzyme binding, oxidoreductase activity, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
18.799.516.7At5g25390832611SHN2 (shine2)encodes a member of the ERF (ethylene response factor) subfamily B-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 12 members in this subfamily including RAP2.11.O.I.C.G.H.G.
18.799.512.8At4g29250829046transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
18.199.527.7At2g19070816424SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE)encodes a protein whose sequence is similar to anthranilate N-hydroxycinnamoyl/benzoyltransferase from Dianthus caryophyllus (gi:2239091)O.I.C.G.H.G.
17.299.544.5At1g61110842404anac025 (Arabidopsis NAC domain containing protein 25)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;POO.I.C.G.H.G.
16.999.564.9At4g33790829521CER4 (ECERIFERUM 4)Encodes an alcohol-forming fatty acyl-CoA reductase, involved in cuticular wax biosynthesis. Lines carrying recessive mutations are deficient in primary alcohol and have glossy stem surfaces.O.I.C.G.H.G.
15.699.511.9At3g61950825368basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMFOO.I.C.G.H.G.
15.099.417.4At3g57620824931glyoxal oxidase-relatedF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BFPOMO.I.C.G.H.G.
14.999.4328.7At5g59310836050LTP4 (LIPID TRANSFER PROTEIN 4)Encodes a member of the lipid transfer protein family. Proteins of this family are generally small (~9 kD), basic, expressed abundantly and contain eight Cys residues. The proteins can bind fatty acids and acylCoA esters and can transfer several different phospholipids. They are localized to the cell wall. The mRNA is present in flowers and siliques, and is strongly up-regulated by abscisic acid. Predicted to be a member of PR-14 pathogenesis-related protein family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
14.999.441.1At5g16960831559NADP-dependent oxidoreductase, putativeF:oxidoreductase activity, binding, zinc ion binding, catalytic activity;P:response to oxidative stress;C:unknown;BOMFPAO.I.C.G.H.G.
14.799.435.4At1g69500843283electron carrier/ heme binding / iron ion binding / monooxygenase/ oxygen bindingF:electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding;P:pollen exine formation;C:cellular_component unknown;MPFBOAVO.I.C.G.H.G.
14.699.476.3At1g50290841451unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cytosol;PO.I.C.G.H.G.
14.499.427.1At1g12320837786unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.199.441.9At5g15360831388unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.430.4At1g75920843925family II extracellular lipase 5 (EXL5)F:lipase activity, carboxylesterase activity, acyltransferase activity;P:sexual reproduction;C:extracellular region;PBFOMO.I.C.G.H.G.
14.099.425.5At5g65205836644short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
13.899.4271.7At2g20870816620cell wall protein precursor, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMFO.I.C.G.H.G.
13.899.456.5At3g18850821418LPAT5F:acyltransferase activity;P:metabolic process;C:unknown;MBOFPVO.I.C.G.H.G.
13.799.467.7At4g08150826364KNAT1 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA)A member of class I knotted1-like homeobox gene family (together with KNAT2). Similar to the knotted1 (kn1) homeobox gene of maize. Normally expressed in the peripheral and rib zone of shoot apical meristem but not in the leaf primordia. It is also expressed in the fourth floral whorl, in the region that would become style, particularly in the cell surrounding the transmitting tissue. No expression was detected in the first three floral whorls. Expression is repressed by auxin and AS1 which results in the promotion of leaf fate.O.I.C.G.H.G.
13.799.456.1At3g16500820898PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)phytochrome-associated protein 1 (PAP1)O.I.C.G.H.G.
13.799.424.1At4g19240827664unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.299.422.0At1g08065837324ACA5 (ALPHA CARBONIC ANHYDRASE 5)F:carbonate dehydratase activity, zinc ion binding;P:one-carbon compound metabolic process;C:endomembrane system;MBPOFVO.I.C.G.H.G.
13.099.486.9At1g75930843926EXL6member of Lipase proteinsO.I.C.G.H.G.
13.099.441.5At2g03740814901late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBMOFAO.I.C.G.H.G.
13.099.416.8At1g10980837641-F:unknown;P:biological_process unknown;C:vacuole;MFPOO.I.C.G.H.G.
12.899.357.7At1g69120843244AP1 (APETALA1)Floral homeotic gene encoding a MADS domain protein homologous to SRF transcription factors. Specifies floral meristem and sepal identity. Required for the transcriptional activation of AGAMOUS. Interacts with LEAFY.Binds to promoter and regulates the expression of flowering time genes SVP, SOC1 and AGL24.O.I.C.G.H.G.
12.799.326.7At1g23570838967unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.799.314.3At1g75790843912sks18 (SKU5 Similar 18)F:pectinesterase activity, copper ion binding;P:unknown;C:endomembrane system;FBPMOAO.I.C.G.H.G.
12.599.312.3At1g77870844123MUB5 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 5 PRECURSOR)F:molecular_function unknown;P:protein modification process;C:cellular_component unknown;PO.I.C.G.H.G.
12.499.375.1At2g22980816829serine-type carboxypeptidaseF:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOO.I.C.G.H.G.
12.399.318.4At3g23770821959glycosyl hydrolase family 17 proteinF:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFOO.I.C.G.H.G.
12.399.315.6At1g69080843240universal stress protein (USP) family proteinF:molecular_function unknown;P:response to stress;C:unknown;PMO.I.C.G.H.G.
12.299.3126.5At1g02205837602CER1 (ECERIFERUM 1)Expression of the CER1 gene associated with production of stem epicuticular wax and pollen fertility. Biochemical studies showed that cer1 mutants are blocked in the conversion of stem wax C30 aldehydes to C29 alkanes, and they also lack the secondary alcohols and ketones. These suggested the CER1 protein is a aldehyde decarbonylase.O.I.C.G.H.G.
12.299.347.3At2g03850814911late embryogenesis abundant domain-containing protein / LEA domain-containing proteinF:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;PBOMFAO.I.C.G.H.G.
12.199.317.9At5g23810832446AAP7Encodes nonfunctional amino acid transporter. AAP7 is the most distantly related member of the AAP family, a group of well characterized amino acid transporters within the ATF1 superfamily. Expression of this gene has not been detected with RNA gel blots or promoter GUS studies.O.I.C.G.H.G.
12.099.3137.9At5g22430832304unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
12.099.38.7At5g49070834966KCS21 (3-KETOACYL-COA SYNTHASE 21)Encodes KCS21, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids).O.I.C.G.H.G.
11.999.3351.5At5g59320836051LTP3 (LIPID TRANSFER PROTEIN 3)Predicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
11.899.3168.7At1g27540839645F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
11.899.320.1At2g42940818895DNA-binding family proteinF:DNA binding;P:biological_process unknown;C:chloroplast;PBOO.I.C.G.H.G.
11.799.3122.7At2g21130816648peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamaseF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAVO.I.C.G.H.G.
11.799.329.4At1g13140837871CYP86C3member of CYP86CO.I.C.G.H.G.
11.799.324.7At1g27370839626squamosa promoter-binding protein-like 10 (SPL10)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMO.I.C.G.H.G.
11.599.312.0At3g30460822758zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFVBO.I.C.G.H.G.
11.599.37.8At4g26280828734sulfotransferase family proteinF:sulfotransferase activity;P:biological_process unknown;C:cellular_component unknown;MPOBFO.I.C.G.H.G.
11.499.346.7At5g60910836212AGL8 (agamous-like 8)MADS box gene negatively regulated by APETALA1O.I.C.G.H.G.
11.499.320.5At2g24630816999ATCSLC08encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
11.499.315.8At3g54120824579reticulon family protein (RTNLB12)F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;PMOO.I.C.G.H.G.
11.499.310.9At1g26310839172CAL (CAULIFLOWER)Floral homeotic gene encoding a MADS domain protein homologous to AP1. Enhances the flower to shoot transformation in ap1 mutants.O.I.C.G.H.G.
11.499.39.1At2g31900817748XIFEncodes an novel myosin isoform.O.I.C.G.H.G.
11.299.240.3At2g47160819329BOR1 (REQUIRES HIGH BORON 1)Boron transporter. Protein accumulates in shoots and roots under conditions of boron deficiency and is degraded within several hours of restoring boron supply. Localized to the plasma membrane under B limitation, and to the cytoplasm after B application before degradation. Protein is transferred via the endosomes to the vacuole for degradation.O.I.C.G.H.G.
11.199.253.0At5g44400834466FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAMO.I.C.G.H.G.
11.199.29.3At1g75590843894auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
11.099.219.3At4g24050828505short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAO.I.C.G.H.G.
10.999.229.7At5g62960836416unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOO.I.C.G.H.G.
10.999.229.6At1g28375839734unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.999.25.6At2g03170814846ASK14 (ARABIDOPSIS SKP1-LIKE 14)F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MPOFVO.I.C.G.H.G.
10.899.2280.1At1g48750841297protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
10.899.222.0At4g29980829121unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.799.2165.6At5g33370833315GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
10.799.219.5At5g14090831258unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
10.699.211.0At5g23350832399GRAM domain-containing protein / ABA-responsive protein-relatedF:unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
10.499.244.6At4g35420829695dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase familyF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, metabolic process;C:endomembrane system;BOPFMAVO.I.C.G.H.G.
10.199.267.1At3g23730821955xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
10.199.210.9At2g33360817899unknown proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;POBFMO.I.C.G.H.G.



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