Microarray experiments to specifically-expressed genes

GSM ID GSM133737
Assay name Buchanan-Wollaston_A-9-bwoll-Co1_SLD
GSE experiment GSE5727: The effects of mutants in stress response pathways on gene expression during senescence

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
124.999.9146.3At1g66390842957MYB90 (MYB DOMAIN PROTEIN 90)production of anthocyanin pigment 2 protein (PAP2)O.I.C.G.H.G.
102.199.9154.2At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
93.599.9231.2At5g45890834629SAG12 (SENESCENCE-ASSOCIATED GENE 12)Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.O.I.C.G.H.G.
92.699.972.3At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
87.099.9168.5At5g54060835489UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFOO.I.C.G.H.G.
76.899.9201.1At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
73.999.953.0At1g11700837714unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
68.199.9193.3At1g64360842743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
67.799.9134.4At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
67.499.860.6At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
61.499.8113.4At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
59.699.887.5At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
59.399.8111.7At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.O.I.C.G.H.G.
56.799.8134.4At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
55.799.8255.1At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
55.699.8103.9At5g19460832066atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMPO.I.C.G.H.G.
53.299.864.0At1g55760842025BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:unknown;MPOVFO.I.C.G.H.G.
52.599.896.7At2g25625817103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
52.299.866.4At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
50.299.815.6At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
48.899.8253.2At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
48.599.829.4At5g39030833895protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
47.799.867.6At5g434408343642-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.C.G.H.G.
46.699.812.9At3g49400824102transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:cellular_component unknown;MBOFPO.I.C.G.H.G.
45.199.876.9At1g56650842120PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.O.I.C.G.H.G.
44.699.8143.7At1g56600842114AtGolS2 (Arabidopsis thaliana galactinol synthase 2)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
44.099.842.5At3g28080822432nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBOAMO.I.C.G.H.G.
43.199.826.5At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
40.799.8123.8At4g10500826642oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFMO.I.C.G.H.G.
40.499.848.9At1g73040843635jacalin lectin family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOO.I.C.G.H.G.
39.399.873.9At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
38.199.845.3At2g03530814882UPS2 (UREIDE PERMEASE 2)Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.O.I.C.G.H.G.
38.099.828.3At4g32810829417CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8)Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.O.I.C.G.H.G.
37.499.712.8At1g47890841206AtRLP7 (Receptor Like Protein 7)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
37.299.7209.0At5g42800834291DFR (DIHYDROFLAVONOL 4-REDUCTASE)dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.O.I.C.G.H.G.
36.599.731.3At5g59050836022unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
36.499.780.3At3g27210822340unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBFO.I.C.G.H.G.
35.299.7122.2At5g18130831931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
35.299.713.1At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
33.899.731.5At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
33.699.792.4At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.O.I.C.G.H.G.
33.099.737.0At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFO.I.C.G.H.G.
32.999.737.4At2g29120817460ATGLR2.7member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
32.999.725.6At5g17450831611heavy-metal-associated domain-containing protein / copper chaperone (CCH)-relatedF:metal ion binding;P:metal ion transport;C:unknown;PFBMO.I.C.G.H.G.
32.599.722.6At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolO.I.C.G.H.G.
32.399.7159.3At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
31.999.799.0At5g53420835423-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
31.999.741.2At1g10970837640ZIP4 (ZINC TRANSPORTER 4 PRECURSOR)A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root and shoot. Expression is regulated by copper, but response to copper deficiency is detected only after three weeks of deficiency.O.I.C.G.H.G.
31.799.7164.2At2g18230816338AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)Encodes a protein that might have inorganic pyrophosphatase activity.O.I.C.G.H.G.
30.299.757.8At1g54570841899esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOFO.I.C.G.H.G.
30.199.7196.8At4g22870828386leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
30.199.735.8At1g30500839929NF-YA7 (NUCLEAR FACTOR Y, SUBUNIT A7)F:transcription factor activity, specific transcriptional repressor activity;P:negative regulation of gene-specific transcription, regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
29.899.735.3At1g05300837029ZIP5member of Fe(II) transporter isolog familyO.I.C.G.H.G.
29.799.749.7At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
29.599.727.9At2g47190819332MYB2 (MYB DOMAIN PROTEIN 2)Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.O.I.C.G.H.G.
29.499.773.7At1g48090841226phosphoinositide bindingF:phosphoinositide binding;P:signal transduction;C:chloroplast;MOFPBAO.I.C.G.H.G.
29.399.717.0At3g59580825127RWP-RK domain-containing proteinF:transcription factor activity;P:unknown;C:unknown;PBOMO.I.C.G.H.G.
29.199.737.4At1g31820840072amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPAO.I.C.G.H.G.
29.099.789.2At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPO.I.C.G.H.G.
29.099.765.9At4g00700828031C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFO.I.C.G.H.G.
29.099.752.4At1g13090837866CYP71B28putative cytochrome P450O.I.C.G.H.G.
28.699.750.8At5g41410834143BEL1 (BELL 1)Homeodomain protein required for ovule identity.Loss of function mutations show homeotic conversion of integuments to carpels.Forms heterodimers with STM and KNAT1. Interacts with AG-SEP heterodimers is thought to restrict WUS expression. BEL interacts with MADS box dimers composed of SEP1(or SEP3) and AG, SHP1, SHP2 and STK. The interaction of BEL1 with AG-SEP3 is required for proper integument development and specification of integument identity.O.I.C.G.H.G.
28.299.723.8At1g55280841973-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
28.199.719.0At3g08870820035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
28.099.753.0At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
27.999.7119.3At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
27.599.7223.1At2g20920816626unknown proteinF:unknown;P:unknown;C:membrane;BPOO.I.C.G.H.G.
26.999.797.1At4g22920828391NYE1 (NON-YELLOWING 1)Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.O.I.C.G.H.G.
26.499.781.5At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.O.I.C.G.H.G.
26.099.7105.6At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
25.199.6112.7At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.O.I.C.G.H.G.
25.099.622.2At3g10320820194transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups;P:biological_process unknown;C:cellular_component unknown;PMOBFO.I.C.G.H.G.
25.099.620.8At2g29090817457CYP707A2Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family. This gene predominantly accumulates in dry seeds and is up-regulated immediately following imbibition. CYP707A2 appears to play a major role in the rapid decrease in ABA levels during early seed imbibition.O.I.C.G.H.G.
24.899.6110.0At4g09020826481ISA3 (ISOAMYLASE 3)Encodes an isoamylase-like protein. Mutant studies show that the gene is strongly involved in starch breakdown. A GUS-protein fusion product was shown to localize to the surface of chloroplastic structures reminiscent of starch granules. In the mutants, the chloroplastic α-amylase AMY3 is upregulated.O.I.C.G.H.G.
24.599.613.9At1g52800841713oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
24.399.652.6At3g08860820034alanine--glyoxylate aminotransferase, putative / beta-alanine-pyruvate aminotransferase, putative / AGT, putativeF:pyridoxal phosphate binding, transaminase activity, catalytic activity, alanine-glyoxylate transaminase activity;P:unknown;C:mitochondrion;BOMFAPVO.I.C.G.H.G.
24.199.615.6At3g16360820883AHP4 (HPT PHOSPHOTRANSMITTER 4)Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).O.I.C.G.H.G.
24.099.6201.8At1g67360843057rubber elongation factor (REF) family proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
23.999.6227.3At1g21000838694zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
23.999.675.6At1g11210837662unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;POO.I.C.G.H.G.
23.899.650.9At1g69270843258RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1)RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1.O.I.C.G.H.G.
23.499.664.8At2g33480817913ANAC041 (Arabidopsis NAC domain containing protein 41)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
23.399.680.5At4g14020827038rapid alkalinization factor (RALF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.299.618.0At1g48000841218MYB112 (myb domain protein 112)Encodes a putative transcription factor (MYB112).O.I.C.G.H.G.
22.899.6130.2At3g11660820338NHL1encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus. Localization of the gene product is similar to that of NHL3 (plasma membrane) but it is yet inconclusive.O.I.C.G.H.G.
22.299.634.2At1g28570839757GDSL-motif lipase, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
22.099.6113.0At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
22.099.6104.4At1g30250839905unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
22.099.667.8At4g17670827487senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.899.680.6At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
21.599.670.9At5g11840831057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBPO.I.C.G.H.G.
21.099.622.4At4g04750825811carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
20.799.635.0At5g10930830960CIPK5 (CBL-INTERACTING PROTEIN KINASE 5)Encodes CBL-interacting protein kinase 5 (CIPK5).O.I.C.G.H.G.
20.399.686.3At4g17770827498ATTPS5Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.
20.399.69.5At3g50940824258AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
20.299.67.9At4g26950828802unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.199.643.4At1g64810842789APO1 (ACCUMULATION OF PHOTOSYSTEM ONE 1)chloroplast APO1O.I.C.G.H.G.
19.999.6163.0At1g63840842687zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFVO.I.C.G.H.G.
19.799.613.8At5g06510830539NF-YA10 (NUCLEAR FACTOR Y, SUBUNIT A10)F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:CCAAT-binding factor complex, nucleus;PMFOO.I.C.G.H.G.
19.699.626.8At2g29370817486tropinone reductase, putative / tropine dehydrogenase, putativeF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.



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