CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133736

Assay name Buchanan-Wollaston_A-8-bwoll-Ei2_SLD

GSE experiment GSE5727: The effects of mutants in stress response pathways on gene expression during senescence

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
122.9 99.9 259.8 At1g64360 842743 unknown protein F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P O.I. C.G. H.G.
105.9 99.9 149.3 At1g28230 839717 PUP1 (PURINE PERMEASE 1) Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation. O.I. C.G. H.G.
104.4 99.9 108.5 At2g44240 819032 unknown protein F:unknown;P:response to oxidative stress;C:endomembrane system;PFB O.I. C.G. H.G.
103.5 99.9 76.5 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
98.4 99.9 237.2 At5g45890 834629 SAG12 (SENESCENCE-ASSOCIATED GENE 12) Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH. O.I. C.G. H.G.
92.8 99.9 270.0 At5g39520 833948 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO O.I. C.G. H.G.
91.4 99.9 127.6 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
81.4 99.9 137.6 At4g33040 829441 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB O.I. C.G. H.G.
78.9 99.9 160.5 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO O.I. C.G. H.G.
71.0 99.9 77.4 At1g02470 837812 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP O.I. C.G. H.G.
69.0 99.9 161.2 At4g10500 826642 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM O.I. C.G. H.G.
66.6 99.8 184.3 At1g76960 844031 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
63.5 99.8 91.2 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. O.I. C.G. H.G.
60.7 99.8 161.2 At2g18050 816317 HIS1-3 (HISTONE H1-3) encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA. O.I. C.G. H.G.
59.5 99.8 16.2 At1g47890 841206 AtRLP7 (Receptor Like Protein 7) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV O.I. C.G. H.G.
59.4 99.8 173.5 At5g17220 831586 ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems. O.I. C.G. H.G.
56.9 99.8 270.5 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
56.5 99.8 100.1 At3g27210 822340 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF O.I. C.G. H.G.
53.0 99.8 156.7 At1g56600 842114 AtGolS2 (Arabidopsis thaliana galactinol synthase 2) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
52.8 99.8 72.7 At4g05590 825927 unknown protein F:unknown;P:biological_process unknown;C:mitochondrion;MFPO O.I. C.G. H.G.
50.2 99.8 242.7 At5g42800 834291 DFR (DIHYDROFLAVONOL 4-REDUCTASE) dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins. O.I. C.G. H.G.
47.9 99.8 44.6 At4g23880 828487 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF O.I. C.G. H.G.
46.8 99.8 67.0 At5g43440 834364 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to ACC oxidase O.I. C.G. H.G.
40.7 99.8 106.4 At4g14020 827038 rapid alkalinization factor (RALF) family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.7 99.8 213.5 At3g18250 821353 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO O.I. C.G. H.G.
39.7 99.8 13.9 At4g18980 827634 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
39.3 99.8 83.9 At2g33480 817913 ANAC041 (Arabidopsis NAC domain containing protein 41) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF O.I. C.G. H.G.
39.2 99.8 84.3 At1g65690 842880 harpin-induced protein-related / HIN1-related / harpin-responsive protein-related F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
39.1 99.8 90.5 At4g17670 827487 senescence-associated protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
38.6 99.8 109.4 At2g17040 816209 anac036 (Arabidopsis NAC domain containing protein 36) F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P O.I. C.G. H.G.
38.3 99.8 127.5 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
37.2 99.7 79.8 At3g50770 824241 calmodulin-related protein, putative F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB O.I. C.G. H.G.
36.0 99.7 137.7 At4g12280 826837 copper amine oxidase family protein F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA O.I. C.G. H.G.
35.2 99.7 23.5 At1g79900 844329 BAC2 encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol O.I. C.G. H.G.
34.4 99.7 12.9 At3g24900 822088 AtRLP39 (Receptor Like Protein 39) F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
34.2 99.7 212.0 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV O.I. C.G. H.G.
33.6 99.7 81.8 At3g47480 823902 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB O.I. C.G. H.G.
32.7 99.7 107.1 At4g22920 828391 NYE1 (NON-YELLOWING 1) Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves. O.I. C.G. H.G.
32.4 99.7 101.5 At1g55265 841971 unknown protein F:unknown;P:biological_process unknown;C:vacuole;PBO O.I. C.G. H.G.
32.2 99.7 22.9 At1g21240 838719 WAK3 (wall associated kinase 3) encodes a wall-associated kinase O.I. C.G. H.G.
30.6 99.7 91.9 At5g62150 836335 peptidoglycan-binding LysM domain-containing protein F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P O.I. C.G. H.G.
29.6 99.7 252.8 At1g21000 838694 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
29.0 99.7 24.7 At4g32810 829417 CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8) Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching. O.I. C.G. H.G.
28.1 99.7 120.0 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
27.7 99.7 89.2 At5g39670 833963 calcium-binding EF hand family protein F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB O.I. C.G. H.G.
27.6 99.7 33.1 At3g13672 820573 seven in absentia (SINA) family protein F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO O.I. C.G. H.G.
27.5 99.7 83.1 At5g33290 833302 XGD1 (XYLOGALACTURONAN DEFICIENT 1) Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis. O.I. C.G. H.G.
26.7 99.7 38.2 At3g25010 822092 AtRLP41 (Receptor Like Protein 41) F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
26.1 99.7 46.7 At3g48020 823957 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
25.8 99.7 82.9 At5g16570 831519 GLN1 Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium O.I. C.G. H.G.
25.1 99.6 15.1 At1g61930 842488 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.0 99.6 22.3 At5g17450 831611 heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related F:metal ion binding;P:metal ion transport;C:unknown;PFBM O.I. C.G. H.G.
24.5 99.6 85.5 At1g77920 844127 bZIP family transcription factor F:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMB O.I. C.G. H.G.
23.9 99.6 44.6 At1g53030 841736 cytochrome c oxidase copper chaperone family protein encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots. O.I. C.G. H.G.
23.6 99.6 70.4 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF O.I. C.G. H.G.
23.5 99.6 84.9 At5g53420 835423 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
23.5 99.6 48.1 At1g14130 837972 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFM O.I. C.G. H.G.
22.8 99.6 24.6 At2g47190 819332 MYB2 (MYB DOMAIN PROTEIN 2) Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin. O.I. C.G. H.G.
22.7 99.6 43.6 At5g61640 836286 PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1) ubiquitous enzyme that repairs oxidatively damaged proteins O.I. C.G. H.G.
22.6 99.6 103.0 At1g70810 843418 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
22.4 99.6 25.7 At2g28710 817420 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
21.7 99.6 109.0 At3g04070 819562 anac047 (Arabidopsis NAC domain containing protein 47) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
21.6 99.6 31.5 At1g16500 838220 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFV O.I. C.G. H.G.
21.5 99.6 46.5 At3g11010 820272 AtRLP34 (Receptor Like Protein 34) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
21.3 99.6 29.6 At3g26220 822223 CYP71B3 cytochrome P450 monooxygenase O.I. C.G. H.G.
21.0 99.6 48.2 At1g54570 841899 esterase/lipase/thioesterase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF O.I. C.G. H.G.
20.8 99.6 20.4 At1g55280 841973 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO O.I. C.G. H.G.
20.6 99.6 84.5 At4g09760 826564 choline kinase, putative encodes a choline synthase whose gene expression is induced by high salt and mannitol. O.I. C.G. H.G.
20.3 99.6 14.3 At3g16360 820883 AHP4 (HPT PHOSPHOTRANSMITTER 4) Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). O.I. C.G. H.G.
19.8 99.6 497.1 At4g32940 829431 GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death. O.I. C.G. H.G.
19.7 99.6 33.2 At5g48410 834896 ATGLR1.3 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
19.6 99.6 61.2 At1g67940 843122 ATNAP3 member of NAP subfamily O.I. C.G. H.G.
19.4 99.6 47.7 At3g03870 821099 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM O.I. C.G. H.G.
19.4 99.6 12.6 At2g29110 817459 ATGLR2.8 member of Putative ligand-gated ion channel subunit family O.I. C.G. H.G.
19.3 99.6 81.1 At5g65870 836716 ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR) Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor. O.I. C.G. H.G.
18.9 99.5 16.2 At1g48000 841218 MYB112 (myb domain protein 112) Encodes a putative transcription factor (MYB112). O.I. C.G. H.G.
18.8 99.5 104.6 At4g23140 828413 CRK6 (CYSTEINE-RICH RLK 6) Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307) O.I. C.G. H.G.
18.8 99.5 40.2 At1g16510 838221 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO O.I. C.G. H.G.
18.6 99.5 215.3 At2g43570 818959 chitinase, putative F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV O.I. C.G. H.G.
18.6 99.5 149.0 At1g10500 837590 ATCPISCA (chloroplast-localized IscA-like protein) Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues. O.I. C.G. H.G.
18.6 99.5 52.5 At1g02310 839444 glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAM O.I. C.G. H.G.
18.6 99.5 46.5 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
18.6 99.5 31.6 At2g03530 814882 UPS2 (UREIDE PERMEASE 2) Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport. O.I. C.G. H.G.
18.6 99.5 26.6 At1g11700 837714 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
18.5 99.5 105.2 At4g01940 828196 NFU1 Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast. O.I. C.G. H.G.
18.4 99.5 12.1 At1g52800 841713 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
18.2 99.5 145.9 At1g80130 844353 binding F:binding;P:response to oxidative stress;C:membrane;BPOMFAV O.I. C.G. H.G.
18.0 99.5 419.6 At2g14560 815943 LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA) Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5. O.I. C.G. H.G.
18.0 99.5 146.0 At1g55210 841964 disease resistance response F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
18.0 99.5 73.7 At3g19550 821491 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
17.8 99.5 33.0 At3g49210 824082 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA O.I. C.G. H.G.
17.7 99.5 151.4 At5g43150 834332 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P O.I. C.G. H.G.
17.6 99.5 76.7 At1g76590 843992 zinc-binding family protein F:binding;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
17.4 99.5 15.0 At3g08870 820035 lectin protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
17.2 99.5 34.4 At1g01725 839271 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
17.2 99.5 24.8 At4g23610 828461 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.7 99.5 174.2 At2g20920 816626 unknown protein F:unknown;P:unknown;C:membrane;BPO O.I. C.G. H.G.
16.7 99.5 147.5 At4g18930 827628 cyclic phosphodiesterase F:cyclic-nucleotide phosphodiesterase activity;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:cytoplasm;POBFA O.I. C.G. H.G.
16.5 99.5 42.8 At1g14370 837999 APK2A (PROTEIN KINASE 2A) Encodes protein kinase APK2a. O.I. C.G. H.G.
16.5 99.5 33.5 At2g25000 817039 WRKY60 Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two. O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
122.9	99.9	259.8	At1g64360	842743	unknown protein	F:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;P	O.I.	C.G.	H.G.
105.9	99.9	149.3	At1g28230	839717	PUP1 (PURINE PERMEASE 1)	Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.	O.I.	C.G.	H.G.
104.4	99.9	108.5	At2g44240	819032	unknown protein	F:unknown;P:response to oxidative stress;C:endomembrane system;PFB	O.I.	C.G.	H.G.
103.5	99.9	76.5	At4g04500	825780	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
98.4	99.9	237.2	At5g45890	834629	SAG12 (SENESCENCE-ASSOCIATED GENE 12)	Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.	O.I.	C.G.	H.G.
92.8	99.9	270.0	At5g39520	833948	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPO	O.I.	C.G.	H.G.
91.4	99.9	127.6	At2g25625	817103	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
81.4	99.9	137.6	At4g33040	829441	glutaredoxin family protein	F:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOB	O.I.	C.G.	H.G.
78.9	99.9	160.5	At5g54060	835489	UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)	F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO	O.I.	C.G.	H.G.
71.0	99.9	77.4	At1g02470	837812	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP	O.I.	C.G.	H.G.
69.0	99.9	161.2	At4g10500	826642	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFM	O.I.	C.G.	H.G.
66.6	99.8	184.3	At1g76960	844031	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
63.5	99.8	91.2	At1g56650	842120	PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)	Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.	O.I.	C.G.	H.G.
60.7	99.8	161.2	At2g18050	816317	HIS1-3 (HISTONE H1-3)	encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.	O.I.	C.G.	H.G.
59.5	99.8	16.2	At1g47890	841206	AtRLP7 (Receptor Like Protein 7)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAV	O.I.	C.G.	H.G.
59.4	99.8	173.5	At5g17220	831586	ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.	O.I.	C.G.	H.G.
56.9	99.8	270.5	At4g22870	828386	leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
56.5	99.8	100.1	At3g27210	822340	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBF	O.I.	C.G.	H.G.
53.0	99.8	156.7	At1g56600	842114	AtGolS2 (Arabidopsis thaliana galactinol synthase 2)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
52.8	99.8	72.7	At4g05590	825927	unknown protein	F:unknown;P:biological_process unknown;C:mitochondrion;MFPO	O.I.	C.G.	H.G.
50.2	99.8	242.7	At5g42800	834291	DFR (DIHYDROFLAVONOL 4-REDUCTASE)	dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.	O.I.	C.G.	H.G.
47.9	99.8	44.6	At4g23880	828487	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPF	O.I.	C.G.	H.G.
46.8	99.8	67.0	At5g43440	834364	2-oxoglutarate-dependent dioxygenase, putative	encodes a protein whose sequence is similar to ACC oxidase	O.I.	C.G.	H.G.
40.7	99.8	106.4	At4g14020	827038	rapid alkalinization factor (RALF) family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.7	99.8	213.5	At3g18250	821353	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFO	O.I.	C.G.	H.G.
39.7	99.8	13.9	At4g18980	827634	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
39.3	99.8	83.9	At2g33480	817913	ANAC041 (Arabidopsis NAC domain containing protein 41)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOF	O.I.	C.G.	H.G.
39.2	99.8	84.3	At1g65690	842880	harpin-induced protein-related / HIN1-related / harpin-responsive protein-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
39.1	99.8	90.5	At4g17670	827487	senescence-associated protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.6	99.8	109.4	At2g17040	816209	anac036 (Arabidopsis NAC domain containing protein 36)	F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;P	O.I.	C.G.	H.G.
38.3	99.8	127.5	At5g18130	831931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
37.2	99.7	79.8	At3g50770	824241	calmodulin-related protein, putative	F:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOB	O.I.	C.G.	H.G.
36.0	99.7	137.7	At4g12280	826837	copper amine oxidase family protein	F:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPA	O.I.	C.G.	H.G.
35.2	99.7	23.5	At1g79900	844329	BAC2	encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosol	O.I.	C.G.	H.G.
34.4	99.7	12.9	At3g24900	822088	AtRLP39 (Receptor Like Protein 39)	F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
34.2	99.7	212.0	At5g23240	832388	DNAJ heat shock N-terminal domain-containing protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV	O.I.	C.G.	H.G.
33.6	99.7	81.8	At3g47480	823902	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
32.7	99.7	107.1	At4g22920	828391	NYE1 (NON-YELLOWING 1)	Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.	O.I.	C.G.	H.G.
32.4	99.7	101.5	At1g55265	841971	unknown protein	F:unknown;P:biological_process unknown;C:vacuole;PBO	O.I.	C.G.	H.G.
32.2	99.7	22.9	At1g21240	838719	WAK3 (wall associated kinase 3)	encodes a wall-associated kinase	O.I.	C.G.	H.G.
30.6	99.7	91.9	At5g62150	836335	peptidoglycan-binding LysM domain-containing protein	F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:endomembrane system;P	O.I.	C.G.	H.G.
29.6	99.7	252.8	At1g21000	838694	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
29.0	99.7	24.7	At4g32810	829417	CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8)	Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.	O.I.	C.G.	H.G.
28.1	99.7	120.0	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
27.7	99.7	89.2	At5g39670	833963	calcium-binding EF hand family protein	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOB	O.I.	C.G.	H.G.
27.6	99.7	33.1	At3g13672	820573	seven in absentia (SINA) family protein	F:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPO	O.I.	C.G.	H.G.
27.5	99.7	83.1	At5g33290	833302	XGD1 (XYLOGALACTURONAN DEFICIENT 1)	Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.	O.I.	C.G.	H.G.
26.7	99.7	38.2	At3g25010	822092	AtRLP41 (Receptor Like Protein 41)	F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
26.1	99.7	46.7	At3g48020	823957	-	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
25.8	99.7	82.9	At5g16570	831519	GLN1	Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammonium	O.I.	C.G.	H.G.
25.1	99.6	15.1	At1g61930	842488	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.0	99.6	22.3	At5g17450	831611	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	F:metal ion binding;P:metal ion transport;C:unknown;PFBM	O.I.	C.G.	H.G.
24.5	99.6	85.5	At1g77920	844127	bZIP family transcription factor	F:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMB	O.I.	C.G.	H.G.
23.9	99.6	44.6	At1g53030	841736	cytochrome c oxidase copper chaperone family protein	encodes a copper chaperone, can functional complements the yeast COX17 null mutant. May play a role in the delivery of copper to mitochondria. Expressed in roots and thus may also play a role in copper transport in the roots.	O.I.	C.G.	H.G.
23.6	99.6	70.4	At1g03495	3766646	transferase/ transferase, transferring acyl groups other than amino-acyl groups	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF	O.I.	C.G.	H.G.
23.5	99.6	84.9	At5g53420	835423	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
23.5	99.6	48.1	At1g14130	837972	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFM	O.I.	C.G.	H.G.
22.8	99.6	24.6	At2g47190	819332	MYB2 (MYB DOMAIN PROTEIN 2)	Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.	O.I.	C.G.	H.G.
22.7	99.6	43.6	At5g61640	836286	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	ubiquitous enzyme that repairs oxidatively damaged proteins	O.I.	C.G.	H.G.
22.6	99.6	103.0	At1g70810	843418	C2 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
22.4	99.6	25.7	At2g28710	817420	zinc finger (C2H2 type) family protein	F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
21.7	99.6	109.0	At3g04070	819562	anac047 (Arabidopsis NAC domain containing protein 47)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.6	99.6	31.5	At1g16500	838220	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFV	O.I.	C.G.	H.G.
21.5	99.6	46.5	At3g11010	820272	AtRLP34 (Receptor Like Protein 34)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
21.3	99.6	29.6	At3g26220	822223	CYP71B3	cytochrome P450 monooxygenase	O.I.	C.G.	H.G.
21.0	99.6	48.2	At1g54570	841899	esterase/lipase/thioesterase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOF	O.I.	C.G.	H.G.
20.8	99.6	20.4	At1g55280	841973	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBO	O.I.	C.G.	H.G.
20.6	99.6	84.5	At4g09760	826564	choline kinase, putative	encodes a choline synthase whose gene expression is induced by high salt and mannitol.	O.I.	C.G.	H.G.
20.3	99.6	14.3	At3g16360	820883	AHP4 (HPT PHOSPHOTRANSMITTER 4)	Encodes AHP4, a histidine-containing phosphotransmitter involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHP4 is one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs). AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6).	O.I.	C.G.	H.G.
19.8	99.6	497.1	At4g32940	829431	GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.	O.I.	C.G.	H.G.
19.7	99.6	33.2	At5g48410	834896	ATGLR1.3	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
19.6	99.6	61.2	At1g67940	843122	ATNAP3	member of NAP subfamily	O.I.	C.G.	H.G.
19.4	99.6	47.7	At3g03870	821099	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM	O.I.	C.G.	H.G.
19.4	99.6	12.6	At2g29110	817459	ATGLR2.8	member of Putative ligand-gated ion channel subunit family	O.I.	C.G.	H.G.
19.3	99.6	81.1	At5g65870	836716	ATPSK5 (PHYTOSULFOKINE 5 PRECURSOR)	Probable phytosulfokines 5 precursor, coding for a unique plant peptide growth factor.	O.I.	C.G.	H.G.
18.9	99.5	16.2	At1g48000	841218	MYB112 (myb domain protein 112)	Encodes a putative transcription factor (MYB112).	O.I.	C.G.	H.G.
18.8	99.5	104.6	At4g23140	828413	CRK6 (CYSTEINE-RICH RLK 6)	Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)	O.I.	C.G.	H.G.
18.8	99.5	40.2	At1g16510	838221	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	O.I.	C.G.	H.G.
18.6	99.5	215.3	At2g43570	818959	chitinase, putative	F:chitin binding, chitinase activity;P:cell wall macromolecule catabolic process;C:apoplast, plant-type cell wall;PBFOMV	O.I.	C.G.	H.G.
18.6	99.5	149.0	At1g10500	837590	ATCPISCA (chloroplast-localized IscA-like protein)	Involved in chloroplast Fe-S cluster assembly. Located in the chloroplast stroma. Expressed preferentially in green tissues.	O.I.	C.G.	H.G.
18.6	99.5	52.5	At1g02310	839444	glycosyl hydrolase family protein 5 / cellulase family protein / (1-4)-beta-mannan endohydrolase, putative	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBOAM	O.I.	C.G.	H.G.
18.6	99.5	46.5	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
18.6	99.5	31.6	At2g03530	814882	UPS2 (UREIDE PERMEASE 2)	Mediate high-affinity uracil and 5-FU (a toxic uracil analogue) transport when expressed in yeast and Xenopus oocytes.Involved in allantoin transport.	O.I.	C.G.	H.G.
18.6	99.5	26.6	At1g11700	837714	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
18.5	99.5	105.2	At4g01940	828196	NFU1	Encodes a protein containing the NFU domain that may be involved in iron-sulfur cluster assembly. Part of a five member gene family, more closely related to NFU2 and 3 than to NFU4 and 5. Targeted to the chloroplast.	O.I.	C.G.	H.G.
18.4	99.5	12.1	At1g52800	841713	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
18.2	99.5	145.9	At1g80130	844353	binding	F:binding;P:response to oxidative stress;C:membrane;BPOMFAV	O.I.	C.G.	H.G.
18.0	99.5	419.6	At2g14560	815943	LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)	Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.	O.I.	C.G.	H.G.
18.0	99.5	146.0	At1g55210	841964	disease resistance response	F:molecular_function unknown;P:lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
18.0	99.5	73.7	At3g19550	821491	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
17.8	99.5	33.0	At3g49210	824082	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMA	O.I.	C.G.	H.G.
17.7	99.5	151.4	At5g43150	834332	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;P	O.I.	C.G.	H.G.
17.6	99.5	76.7	At1g76590	843992	zinc-binding family protein	F:binding;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
17.4	99.5	15.0	At3g08870	820035	lectin protein kinase, putative	F:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
17.2	99.5	34.4	At1g01725	839271	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
17.2	99.5	24.8	At4g23610	828461	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.7	99.5	174.2	At2g20920	816626	unknown protein	F:unknown;P:unknown;C:membrane;BPO	O.I.	C.G.	H.G.
16.7	99.5	147.5	At4g18930	827628	cyclic phosphodiesterase	F:cyclic-nucleotide phosphodiesterase activity;P:tRNA splicing, via endonucleolytic cleavage and ligation;C:cytoplasm;POBFA	O.I.	C.G.	H.G.
16.5	99.5	42.8	At1g14370	837999	APK2A (PROTEIN KINASE 2A)	Encodes protein kinase APK2a.	O.I.	C.G.	H.G.
16.5	99.5	33.5	At2g25000	817039	WRKY60	Pathogen-induced transcription factor. Forms protein complexes with itself and with WRKY40. Coexpression with WRKY18 or WRKY40 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.	O.I.	C.G.	H.G.

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GSM ID	GSM133736
Assay name	Buchanan-Wollaston_A-8-bwoll-Ei2_SLD
GSE experiment	GSE5727: The effects of mutants in stress response pathways on gene expression during senescence

Microarray experiments to specifically-expressed genes

GSM ID GSM133736 Assay name Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE experiment GSE5727: The effects of mutants in stress response pathways on gene expression during senescence

GSM ID GSM133736

Assay name Buchanan-Wollaston_A-8-bwoll-Ei2_SLD

GSE experiment GSE5727: The effects of mutants in stress response pathways on gene expression during senescence