Microarray experiments to specifically-expressed genes

GSM ID GSM133735
Assay name Buchanan-Wollaston_A-7-bwoll-Ei1_SLD
GSE experiment GSE5727: The effects of mutants in stress response pathways on gene expression during senescence

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
100.199.975.2At4g04500825780protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
92.199.9139.2At1g28230839717PUP1 (PURINE PERMEASE 1)Encodes a transporter that transports purines,cytokinins and other adenine derivatives. Expressed in the leaf hydathodes where it may be involved in re-uptake of cytokinins during guttation.O.I.C.G.H.G.
88.699.9225.1At5g45890834629SAG12 (SENESCENCE-ASSOCIATED GENE 12)Senescence-associated gene 12 (SAG12) encoding a cysteine protease influenced by cytokinin, auxin, and sugars.Localized to special vacuole found during senescence called senescence associated vacuoles which are different from central vacuole in the tonoplast composition and pH.O.I.C.G.H.G.
84.899.9105.4At1g56650842120PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1)Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene.O.I.C.G.H.G.
80.599.995.3At2g44240819032unknown proteinF:unknown;P:response to oxidative stress;C:endomembrane system;PFBO.I.C.G.H.G.
78.499.9160.0At5g54060835489UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase)F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFOO.I.C.G.H.G.
75.799.9203.9At1g64360842743unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
62.599.8181.4At4g12280826837copper amine oxidase family proteinF:amine oxidase activity, quinone binding, copper ion binding;P:cellular amine metabolic process;C:cellular_component unknown;FBMOPAO.I.C.G.H.G.
61.999.8120.0At4g33040829441glutaredoxin family proteinF:electron carrier activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
60.899.8103.7At3g27210822340unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:plasma membrane;MPOBFO.I.C.G.H.G.
60.699.8279.3At4g22870828386leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putativeF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
59.199.8173.0At5g17220831586ATGSTF12 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). Mutants display no pigments on leaves and stems.O.I.C.G.H.G.
58.999.8262.8At5g42800834291DFR (DIHYDROFLAVONOL 4-REDUCTASE)dihydroflavonol reductase. Catalyzes the conversion of dihydroquercetin to leucocyanidin in the biosynthesis of anthocyanins.O.I.C.G.H.G.
54.899.8207.5At5g39520833948unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOO.I.C.G.H.G.
51.199.8103.4At1g034953766646transferase/ transferase, transferring acyl groups other than amino-acyl groupsF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PFO.I.C.G.H.G.
49.699.8145.7At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
47.899.815.2At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
46.499.890.9At2g25625817103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
45.799.843.5At4g23880828487unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPFO.I.C.G.H.G.
45.699.849.9At3g25010822092AtRLP41 (Receptor Like Protein 41)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMOBFAVO.I.C.G.H.G.
41.199.8137.9At1g56600842114AtGolS2 (Arabidopsis thaliana galactinol synthase 2)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:carbohydrate biosynthetic process;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
39.799.825.5At1g21240838719WAK3 (wall associated kinase 3)encodes a wall-associated kinaseO.I.C.G.H.G.
38.199.897.9At5g33290833302XGD1 (XYLOGALACTURONAN DEFICIENT 1)Acts as a xylogalacturonan xylosyltransferase within the XGA biosynthesis pathway. Involved in pectin biosynthesis.O.I.C.G.H.G.
37.999.812.9At1g47890841206AtRLP7 (Receptor Like Protein 7)F:protein binding, kinase activity;P:signal transduction, defense response;C:endomembrane system;PMBOFAVO.I.C.G.H.G.
37.199.7118.1At4g10500826642oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:secondary metabolic process;C:unknown;POBFMO.I.C.G.H.G.
36.899.755.7At1g02470837812-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPO.I.C.G.H.G.
36.199.7123.8At5g18130831931unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
33.799.735.8At1g11700837714unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POO.I.C.G.H.G.
33.099.7129.7At1g76960844031unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.799.739.1At1g31820840072amino acid permease family proteinF:cationic amino acid transmembrane transporter activity;P:transport, amino acid transport;C:membrane;BFMOPAO.I.C.G.H.G.
31.399.793.3At4g14020827038rapid alkalinization factor (RALF) family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
29.999.787.2At4g14090827046UDP-glucoronosyl/UDP-glucosyl transferase family proteinThe At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring.O.I.C.G.H.G.
28.999.752.6At5g434408343642-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to ACC oxidaseO.I.C.G.H.G.
28.199.757.4At3g03870821099unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
27.799.714.8At1g52800841713oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
27.499.7189.8At5g23240832388DNAJ heat shock N-terminal domain-containing proteinF:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAVO.I.C.G.H.G.
27.199.797.4At4g22920828391NYE1 (NON-YELLOWING 1)Similar to the tomato senescence-inducible chloroplast stay-green protein 1. It is upregulated during maximal senescence in the Arabidopsis life cycle, especially in senescent leaves.O.I.C.G.H.G.
26.499.791.8At1g55265841971unknown proteinF:unknown;P:biological_process unknown;C:vacuole;PBOO.I.C.G.H.G.
26.299.720.3At1g79900844329BAC2encodes a mitochondrial ornithine transporter that exports ornithine from the mitochondria to the cytosolO.I.C.G.H.G.
25.899.7236.0At1g21000838694zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
25.899.789.5At2g17040816209anac036 (Arabidopsis NAC domain containing protein 36)F:transcription factor activity;P:multicellular organismal development, response to chitin;C:cellular_component unknown;PO.I.C.G.H.G.
25.699.718.9At1g48000841218MYB112 (myb domain protein 112)Encodes a putative transcription factor (MYB112).O.I.C.G.H.G.
25.399.621.2At5g39030833895protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
25.299.686.7At1g77920844127bZIP family transcription factorF:transcription factor activity, calmodulin binding;P:defense response to bacterium;C:nucleus;POFMBO.I.C.G.H.G.
25.199.650.1At4g05590825927unknown proteinF:unknown;P:biological_process unknown;C:mitochondrion;MFPOO.I.C.G.H.G.
24.399.686.4At5g53420835423-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POO.I.C.G.H.G.
24.199.655.6At1g34040840301alliinase family proteinF:pyridoxal phosphate binding, carbon-sulfur lyase activity, catalytic activity;P:biological_process unknown;C:endomembrane system;PBOAFO.I.C.G.H.G.
24.199.610.8At4g13810827015AtRLP47 (Receptor Like Protein 47)F:protein binding;P:signal transduction, defense response;C:unknown;PMOBFAVO.I.C.G.H.G.
23.899.689.3At1g76590843992zinc-binding family proteinF:binding;P:biological_process unknown;C:unknown;PMO.I.C.G.H.G.
23.399.617.3At3g08870820035lectin protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
23.199.669.6At4g17670827487senescence-associated protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
23.099.678.4At5g16570831519GLN1Encodes a cytosolic glutamine synthetase, the enzyme has high affinity with substrate ammoniumO.I.C.G.H.G.
22.899.643.6At3g48020823957-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
22.899.621.4At1g55280841973-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMBOO.I.C.G.H.G.
22.799.630.0At3g13672820573seven in absentia (SINA) family proteinF:molecular_function unknown;P:multicellular organismal development, ubiquitin-dependent protein catabolic process;C:nucleus;MPOO.I.C.G.H.G.
22.599.6114.3At4g23140828413CRK6 (CYSTEINE-RICH RLK 6)Arabidopsis thaliana receptor-like protein kinase. Naming convention from Chen et al 2003 (PMID 14756307)O.I.C.G.H.G.
22.099.662.8At2g33480817913ANAC041 (Arabidopsis NAC domain containing protein 41)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFO.I.C.G.H.G.
22.099.655.3At5g19875832109unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
21.899.6192.3At1g67360843057rubber elongation factor (REF) family proteinF:unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
21.799.621.4At4g32810829417CCD8 (CAROTENOID CLEAVAGE DIOXYGENASE 8)Encodes a protein with similarity to carotenoid cleaving deoxygenases, the enzymes that cleave beta-carotene. Involved in the production of a graft transmissable signal to suppress axillary branching. Protein is localized to chloroplast stroma and expressed primarily in root tip. Mutants in the gene exhibit increased shoot branching, and light-dependent defects in hook opening and hypocotyl/root elongation. Only upregulated by auxin in the root and hypocotyl, and this is not required for the inhibition of shoot branching.O.I.C.G.H.G.
21.599.6158.5At1g80130844353bindingF:binding;P:response to oxidative stress;C:membrane;BPOMFAVO.I.C.G.H.G.
21.499.665.3At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
21.499.613.2At2g29110817459ATGLR2.8member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
21.199.660.0At3g50770824241calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:chloroplast;MFPOBO.I.C.G.H.G.
20.999.675.8At5g45380834574sodium:solute symporter family proteinF:urea transmembrane transporter activity, solute:sodium symporter activity;P:cellular response to nitrogen starvation;C:plasma membrane;BOMFAPO.I.C.G.H.G.
20.799.647.5At1g69270843258RPK1 (RECEPTOR-LIKE PROTEIN KINASE 1)RPK1 is a leucine-rich receptor-like kinase located in the plasma membrane which is upregulated by abscisic acid, dehydration, high salt, low temperature, but not by other plant hormones. RPK1 knock-out and antisense plants show an ABA-insensitive phenotype. RPK1 plays a role in ABA-controlled cell proliferation and is a regulator of the ABA signal transduction pathway. Overexpression of the LRR domain has a dominant negative effect on RPK1.O.I.C.G.H.G.
20.399.644.7At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
20.399.624.4At2g28710817420zinc finger (C2H2 type) family proteinF:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMOO.I.C.G.H.G.
20.099.6181.7At1g29395839815COR414-TM1encodes a protein similar to the cold acclimation protein WCOR413 in wheat. Expression is induced by short-term cold-treatment, water deprivation, and abscisic acid treatment. Possibly targeted to thylakoid membrane.O.I.C.G.H.G.
19.799.643.2At1g13090837866CYP71B28putative cytochrome P450O.I.C.G.H.G.
19.099.5486.9At4g32940829431GAMMA-VPE (GAMMA VACUOLAR PROCESSING ENZYME)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.O.I.C.G.H.G.
18.599.5145.8At3g18250821353unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMFOO.I.C.G.H.G.
18.599.522.2At2g47190819332MYB2 (MYB DOMAIN PROTEIN 2)Encodes a MYB transcription factor that possesses an R2R3 MYB DNA binding domain and is known to regulate the expression of salt- and dehydration-responsive genes. Has been shown to bind calmodulin.O.I.C.G.H.G.
18.599.59.1At3g50940824258AAA-type ATPase family proteinF:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAVO.I.C.G.H.G.
18.399.544.9At1g54570841899esterase/lipase/thioesterase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity;P:unknown;C:chloroplast, plastoglobule;BMPOFO.I.C.G.H.G.
18.299.533.4At3g49210824082unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPOMAO.I.C.G.H.G.
18.199.557.4At1g65690842880harpin-induced protein-related / HIN1-related / harpin-responsive protein-relatedF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
18.199.528.4At4g139003770199-F:unknown;P:unknown;C:unknownO.I.C.G.H.G.
17.999.537.1At1g55760842025BTB/POZ domain-containing proteinF:protein binding;P:biological_process unknown;C:unknown;MPOVFO.I.C.G.H.G.
17.899.5253.5At4g13250826942short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAVO.I.C.G.H.G.
17.799.562.9At3g26280822231CYP71B4cytochrome P450 monooxygenaseO.I.C.G.H.G.
17.199.531.0At5g48410834896ATGLR1.3member of Putative ligand-gated ion channel subunit familyO.I.C.G.H.G.
17.199.520.2At4g04750825811carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOAO.I.C.G.H.G.
16.999.573.4At1g68600843190unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;BPFOO.I.C.G.H.G.
16.999.518.6At1g77990844134AST56cDNA encoding a sulfate transporter.O.I.C.G.H.G.
16.799.520.3At3g30560822770transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
16.699.537.7At1g16510838221auxin-responsive family proteinF:molecular_function unknown;P:response to auxin stimulus;C:unknown;POO.I.C.G.H.G.
16.699.537.3At5g61640836286PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)ubiquitous enzyme that repairs oxidatively damaged proteinsO.I.C.G.H.G.
16.499.5401.2At2g14560815943LURP1 (LATE UPREGULATED IN RESPONSE TO HYALOPERONOSPORA PARASITICA)Encodes LURP1, a member of the LURP cluster (late upregulated in response to Hyaloperonospora parasitica) which exhibits a pronounced upregulation after recognition of the pathogenic oomycte H. parasitica. LURP1 is required for full basal defense to H. parasitica and resistance to this pathogen mediated by the R-proteins RPP4 and RPP5.O.I.C.G.H.G.
16.199.571.8At2g46430819251ATCNGC3 (CYCLIC NUCLEOTIDE GATED CHANNEL 3)cyclic nucleotide gated channel (CNGC4), downstream component of the signaling pathways leading to HR/resistanceO.I.C.G.H.G.
16.099.553.0At2g18950816412HPT1 (HOMOGENTISATE PHYTYLTRANSFERASE 1)Encodes homogentisate phytyltransferase involved in tocopherol biosynthesis. Has impact on seed longevity and plays a role in the adaptation to low temperature stress, notably phloem loading.O.I.C.G.H.G.
15.399.421.5At1g56610842116syntaxin-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.399.49.9At3g57950824964unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
15.099.4164.8At2g20920816626unknown proteinF:unknown;P:unknown;C:membrane;BPOO.I.C.G.H.G.
15.099.438.8At3g11010820272AtRLP34 (Receptor Like Protein 34)F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAVO.I.C.G.H.G.
14.999.424.7At3g26220822223CYP71B3cytochrome P450 monooxygenaseO.I.C.G.H.G.
14.999.45.7At4g18000827525unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.899.4112.4At2g18230816338AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)Encodes a protein that might have inorganic pyrophosphatase activity.O.I.C.G.H.G.
14.699.416.6At3g29590822623AT5MATAt3g29590 (At5MAT) encodes a malonyl-CoA:anthocyanidin 5-O-glucoside-6"-O-malonyltransferase that is coordinately expressed with a epistatic 5-O-anthocyanidin glucosyltransferase (At4g14090). The enzyme is involved in the malonylation of anthocyanins in Arabidopsis.O.I.C.G.H.G.
14.599.472.9At4g17770827498ATTPS5Encodes an enzyme putatively involved in trehalose biosynthesis. The protein has a trehalose synthase (TPS)-like domain that may or may not be active as well as a trehalose phosphatase (TPP)-like domain.O.I.C.G.H.G.



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