CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133725

Assay name McCormac_1-3_mutant-NFtreated_Rep1_ATH1

GSE experiment GSE5726: Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
123.3 99.9 285.2 At4g10250 826616 ATHSP22.0 Columbia endomembrane-localized small heat shock protein O.I. C.G. H.G.
86.6 99.9 282.7 At2g47180 819331 AtGolS1 (Arabidopsis thaliana galactinol synthase 1) F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO O.I. C.G. H.G.
82.9 99.9 265.5 At5g59720 836093 HSP18.2 (heat shock protein 18.2) encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock. O.I. C.G. H.G.
80.8 99.9 345.7 At1g53540 841789 17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156) F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM O.I. C.G. H.G.
79.1 99.9 379.2 At1g07400 837252 17.8 kDa class I heat shock protein (HSP17.8-CI) F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
78.7 99.9 231.5 At4g25200 828623 ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6) AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial O.I. C.G. H.G.
76.9 99.9 163.3 At4g27670 828881 HSP21 (HEAT SHOCK PROTEIN 21) chloroplast located small heat shock protein. O.I. C.G. H.G.
75.9 99.9 175.3 At1g52560 841687 26.5 kDa class I small heat shock protein-like (HSP26.5-P) F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:mitochondrion;BPOFAMV O.I. C.G. H.G.
68.8 99.9 356.6 At5g12030 831076 AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A) Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development. O.I. C.G. H.G.
64.8 99.8 220.7 At5g12020 831075 HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN) F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM O.I. C.G. H.G.
63.1 99.8 167.8 At2g26150 817155 ATHSFA2 member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay. O.I. C.G. H.G.
60.0 99.8 181.6 At2g32120 817771 HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2) F:ATP binding;P:protein folding, response to high light intensity, response to hydrogen peroxide, response to heat;C:cellular_component unknown;OBMFPAV O.I. C.G. H.G.
58.0 99.8 125.0 At1g03070 839581 glutamate binding F:glutamate binding;P:biological_process unknown;C:cellular_component unknown;BOMPFV O.I. C.G. H.G.
56.3 99.8 276.2 At1g16030 838174 Hsp70b (heat shock protein 70B) F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVA O.I. C.G. H.G.
55.6 99.8 238.1 At1g54050 841843 17.4 kDa class III heat shock protein (HSP17.4-CIII) F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
45.1 99.8 162.6 At2g46240 819232 BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. O.I. C.G. H.G.
44.7 99.8 232.4 At1g74310 843771 ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101) Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature. O.I. C.G. H.G.
44.2 99.8 71.9 At1g71000 843439 heat shock protein binding F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV O.I. C.G. H.G.
44.1 99.8 333.3 At3g46230 823768 ATHSP17.4 member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds O.I. C.G. H.G.
42.8 99.8 92.5 At1g17870 838366 EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3) S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria. O.I. C.G. H.G.
37.1 99.7 237.9 At2g29500 817499 17.6 kDa class I small heat shock protein (HSP17.6B-CI) F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
33.2 99.7 164.7 At3g09350 820091 armadillo/beta-catenin repeat family protein F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
32.3 99.7 82.2 At5g35320 833486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
32.2 99.7 17.0 At1g44414 841028 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.7 99.7 108.4 At2g20560 816578 DNAJ heat shock family protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV O.I. C.G. H.G.
31.2 99.7 116.6 At1g30070 839886 SGS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPF O.I. C.G. H.G.
29.0 99.7 98.0 At5g37670 833746 15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI) F:molecular_function unknown;P:response to heat;C:unknown;BPOFAM O.I. C.G. H.G.
28.2 99.7 136.1 At5g25450 832619 ubiquinol-cytochrome C reductase complex 14 kDa protein, putative F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;MPFO O.I. C.G. H.G.
25.7 99.7 263.0 At5g52640 835341 ATHSP90.1 (HEAT SHOCK PROTEIN 90.1) Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance. O.I. C.G. H.G.
24.8 99.6 94.1 At4g12400 826849 stress-inducible protein, putative F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV O.I. C.G. H.G.
24.8 99.6 58.2 At2g07731 3768662 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
24.8 99.6 33.0 At3g49160 824077 pyruvate kinase family protein Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress. O.I. C.G. H.G.
21.5 99.6 126.4 At2g19310 816448 - F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFO O.I. C.G. H.G.
21.2 99.6 48.6 At5g50915 835164 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM O.I. C.G. H.G.
21.0 99.6 196.3 At3g24500 822041 MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C) One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses. O.I. C.G. H.G.
21.0 99.6 48.0 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF O.I. C.G. H.G.
20.8 99.6 21.3 At4g02550 827910 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF O.I. C.G. H.G.
20.6 99.6 160.7 At5g48570 834913 peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPA O.I. C.G. H.G.
20.1 99.6 36.9 At3g09640 820121 APX2 (ASCORBATE PEROXIDASE 2) Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms. O.I. C.G. H.G.
20.0 99.6 58.4 At5g47610 834811 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
19.7 99.6 64.9 At4g15420 827213 PRLI-interacting factor K F:peptidase activity, zinc ion binding;P:proteolysis, ubiquitin-dependent protein catabolic process;C:intracellular;MOFPB O.I. C.G. H.G.
18.3 99.5 104.0 At5g12110 831084 elongation factor 1B alpha-subunit 1 (eEF1Balpha1) F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPF O.I. C.G. H.G.
18.1 99.5 190.5 At3g07090 819895 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF O.I. C.G. H.G.
17.6 99.5 6.5 At5g15250 831377 FTSH6 (FTSH PROTEASE 6) Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation. O.I. C.G. H.G.
17.4 99.5 131.1 At5g09590 830818 MTHSC70-2 (MITOCHONDRIAL HSP70 2) heat shock protein 70 (Hsc70-5); nuclear O.I. C.G. H.G.
16.5 99.5 108.2 At2g29340 817483 short-chain dehydrogenase/reductase (SDR) family protein F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV O.I. C.G. H.G.
16.4 99.5 270.1 At3g22840 821855 ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN) Encodes an early light-inducible protein. O.I. C.G. H.G.
16.4 99.5 88.5 At3g16050 820850 A37 Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation. O.I. C.G. H.G.
15.7 99.5 50.1 At4g31870 829316 ATGPX7 (glutathione peroxidase 7) Encodes glutathione peroxidase. O.I. C.G. H.G.
15.6 99.5 43.7 At2g24100 816944 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PO O.I. C.G. H.G.
15.6 99.5 31.9 At4g15680 827245 glutaredoxin family protein F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB O.I. C.G. H.G.
15.2 99.4 295.1 At3g12580 820438 HSP70 (heat shock protein 70) F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA O.I. C.G. H.G.
15.1 99.4 102.9 At4g33660 829507 unknown protein F:unknown;P:unknown;C:unknown;MPOFBVA O.I. C.G. H.G.
14.8 99.4 20.0 At4g26150 828721 CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1) F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM O.I. C.G. H.G.
14.7 99.4 26.6 At4g23493 828448 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
14.6 99.4 49.9 At3g17611 821028 ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14) F:zinc ion binding;P:biological_process unknown;C:integral to membrane, intracellular;BOPMFAV O.I. C.G. H.G.
14.5 99.4 26.6 At3g10450 820209 SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
14.4 99.4 80.0 At5g51440 835218 23.5 kDa mitochondrial small heat shock protein (HSP23.5-M) F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM O.I. C.G. H.G.
14.1 99.4 108.9 At1g02850 839435 BGLU11 (BETA GLUCOSIDASE 11) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
14.1 99.4 21.6 At5g23380 832402 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PO O.I. C.G. H.G.
13.8 99.4 59.2 At5g58770 835991 dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP O.I. C.G. H.G.
13.7 99.4 23.5 At3g26630 822275 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM O.I. C.G. H.G.
13.6 99.4 33.2 At1g58340 842203 ZF14 F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM O.I. C.G. H.G.
13.3 99.4 70.6 At1g18330 838413 EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1) EARLY-PHYTOCHROME-RESPONSIVE1 O.I. C.G. H.G.
13.1 99.4 9.8 At3g07150 819901 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
12.8 99.3 22.4 At1g62730 842571 transferase F:transferase activity;P:biosynthetic process;C:unknown;BOMFP O.I. C.G. H.G.
12.7 99.3 10.1 At2g36750 818247 UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1) F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF O.I. C.G. H.G.
12.6 99.3 73.6 At1g10170 837555 ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1) Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response. O.I. C.G. H.G.
12.4 99.3 42.9 At2g33250 817887 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
12.2 99.3 20.7 At1g66080 842922 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO O.I. C.G. H.G.
12.1 99.3 54.6 At1g78290 844164 - - O.I. C.G. H.G.
12.0 99.3 82.1 At2g31380 817696 STH a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction. O.I. C.G. H.G.
12.0 99.3 33.3 At1g24340 839050 emb2421 (embryo defective 2421) F:oxidoreductase activity, monooxygenase activity;P:embryonic development ending in seed dormancy;C:unknown;BOFPM O.I. C.G. H.G.
11.5 99.3 33.9 At3g51910 824354 AT-HSFA7A member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
11.5 99.3 29.0 At1g53090 841743 SPA4 (SPA1-RELATED 4) Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants. O.I. C.G. H.G.
11.0 99.2 210.8 At4g14690 827119 ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2) Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis. O.I. C.G. H.G.
10.8 99.2 111.5 At4g37760 829932 SQE3 (squalene epoxidase 3) F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA O.I. C.G. H.G.
10.8 99.2 51.1 At2g45950 819203 ASK20 (ARABIDOPSIS SKP1-LIKE 20) F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV O.I. C.G. H.G.
10.5 99.2 41.0 At4g37150 829869 MES9 (METHYL ESTERASE 9) Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro. O.I. C.G. H.G.
10.2 99.2 61.4 At3g62190 825392 DNAJ heat shock N-terminal domain-containing protein F:heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMPFA O.I. C.G. H.G.
10.1 99.2 35.8 At3g21260 821680 glycolipid transfer protein-related F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MFPO O.I. C.G. H.G.
9.9 99.1 38.3 At5g39080 833900 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
9.8 99.1 35.8 At5g43170 834334 AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3) Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor. O.I. C.G. H.G.
9.7 99.1 127.4 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
9.7 99.1 117.4 At5g15450 831398 CLPB3 (CASEIN LYTIC PROTEINASE B3) Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype. O.I. C.G. H.G.
9.5 99.1 59.4 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. O.I. C.G. H.G.
9.4 99.1 39.1 At2g04050 814939 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
9.2 99.1 26.6 At5g56090 835708 COX15 (cytochrome c oxidase 15) Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor. O.I. C.G. H.G.
9.1 99.1 95.6 At4g25700 828675 BETA-OHASE 1 (BETA-HYDROXYLASE 1) Converts beta-carotene to zeaxanthin via cryptoxanthin. O.I. C.G. H.G.
9.1 99.1 15.5 At1g72660 843598 developmentally regulated GTP-binding protein, putative F:GTP binding;P:unknown;C:intracellular;BOMAFP O.I. C.G. H.G.
9.0 99.1 51.4 At3g51870 824350 binding / transporter F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV O.I. C.G. H.G.
8.9 99.0 65.1 At5g11680 831040 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, plasma membrane;MOFP O.I. C.G. H.G.
8.9 99.0 48.2 At2g26980 817240 CIPK3 (CBL-INTERACTING PROTEIN KINASE 3) encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers. O.I. C.G. H.G.
8.8 99.0 56.5 At5g24460 832517 unknown protein F:unknown;P:biological_process unknown;C:cell wall;PFO O.I. C.G. H.G.
8.7 99.0 78.8 At2g07699 3768015 - F:unknown;P:unknown;C:unknown O.I. C.G. H.G.
8.7 99.0 16.8 At5g64950 836619 mitochondrial transcription termination factor-related / mTERF-related F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO O.I. C.G. H.G.
8.6 99.0 97.1 At1g07350 837246 transformer serine/arginine-rich ribonucleoprotein, putative F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:unknown;MPFOBVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
123.3	99.9	285.2	At4g10250	826616	ATHSP22.0	Columbia endomembrane-localized small heat shock protein	O.I.	C.G.	H.G.
86.6	99.9	282.7	At2g47180	819331	AtGolS1 (Arabidopsis thaliana galactinol synthase 1)	F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBO	O.I.	C.G.	H.G.
82.9	99.9	265.5	At5g59720	836093	HSP18.2 (heat shock protein 18.2)	encodes a low molecular weight heat shock protein that contains the heat shock element in the promoter region. Expression is induced in response to heat shock.	O.I.	C.G.	H.G.
80.8	99.9	345.7	At1g53540	841789	17.6 kDa class I small heat shock protein (HSP17.6C-CI) (AA 1-156)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	O.I.	C.G.	H.G.
79.1	99.9	379.2	At1g07400	837252	17.8 kDa class I heat shock protein (HSP17.8-CI)	F:unknown;P:response to oxidative stress, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
78.7	99.9	231.5	At4g25200	828623	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	AtHSP23.6-mito mRNA, nuclear gene encoding mitochondrial	O.I.	C.G.	H.G.
76.9	99.9	163.3	At4g27670	828881	HSP21 (HEAT SHOCK PROTEIN 21)	chloroplast located small heat shock protein.	O.I.	C.G.	H.G.
75.9	99.9	175.3	At1g52560	841687	26.5 kDa class I small heat shock protein-like (HSP26.5-P)	F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:mitochondrion;BPOFAMV	O.I.	C.G.	H.G.
68.8	99.9	356.6	At5g12030	831076	AT-HSP17.6A (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.6A)	Encodes a cytosolic small heat shock protein with chaperone activity that is induced by heat and osmotic stress and is also expressed late in seed development.	O.I.	C.G.	H.G.
64.8	99.8	220.7	At5g12020	831075	HSP17.6II (17.6 KDA CLASS II HEAT SHOCK PROTEIN)	F:unknown;P:response to heat;C:cellular_component unknown;BPOFAM	O.I.	C.G.	H.G.
63.1	99.8	167.8	At2g26150	817155	ATHSFA2	member of Heat Stress Transcription Factor (Hsf) family. Involved in response to misfolded protein accumulation in the cytosol. Regulated by alternative splicing and non-sense-mediated decay.	O.I.	C.G.	H.G.
60.0	99.8	181.6	At2g32120	817771	HSP70T-2 (HEAT-SHOCK PROTEIN 70T-2)	F:ATP binding;P:protein folding, response to high light intensity, response to hydrogen peroxide, response to heat;C:cellular_component unknown;OBMFPAV	O.I.	C.G.	H.G.
58.0	99.8	125.0	At1g03070	839581	glutamate binding	F:glutamate binding;P:biological_process unknown;C:cellular_component unknown;BOMPFV	O.I.	C.G.	H.G.
56.3	99.8	276.2	At1g16030	838174	Hsp70b (heat shock protein 70B)	F:ATP binding;P:protein folding, response to heat;C:cytosol, cell wall, plasma membrane, chloroplast, membrane;BOMFPVA	O.I.	C.G.	H.G.
55.6	99.8	238.1	At1g54050	841843	17.4 kDa class III heat shock protein (HSP17.4-CIII)	F:molecular_function unknown;P:response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
45.1	99.8	162.6	At2g46240	819232	BAG6 (BCL-2-ASSOCIATED ATHANOGENE 6)	A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Expression of BAG6 in leaves was strongly induced by heat stress. Knockout mutants exhibited enhanced susceptibility to fungal pathogen Botrytis cinerea. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development.	O.I.	C.G.	H.G.
44.7	99.8	232.4	At1g74310	843771	ATHSP101 (ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 101)	Encodes ClpB1, which belongs to the Casein lytic proteinase/heat shock protein 100 (Clp/Hsp100) family. Involved in refolding of proteins which form aggregates under heat stress. Also known as AtHsp101. AtHsp101 is a cytosolic heat shock protein required for acclimation to high temperature.	O.I.	C.G.	H.G.
44.2	99.8	71.9	At1g71000	843439	heat shock protein binding	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;BOMFPAV	O.I.	C.G.	H.G.
44.1	99.8	333.3	At3g46230	823768	ATHSP17.4	member of the class I small heat-shock protein (sHSP) family, which accounts for the majority of sHSPs in maturing seeds	O.I.	C.G.	H.G.
42.8	99.8	92.5	At1g17870	838366	EGY3 (ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3)	S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442�454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171�179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.	O.I.	C.G.	H.G.
37.1	99.7	237.9	At2g29500	817499	17.6 kDa class I small heat shock protein (HSP17.6B-CI)	F:molecular_function unknown;P:response to oxidative stress, response to cyclopentenone, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
33.2	99.7	164.7	At3g09350	820091	armadillo/beta-catenin repeat family protein	F:binding;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
32.3	99.7	82.2	At5g35320	833486	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
32.2	99.7	17.0	At1g44414	841028	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.7	99.7	108.4	At2g20560	816578	DNAJ heat shock family protein	F:unfolded protein binding, heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMFPAV	O.I.	C.G.	H.G.
31.2	99.7	116.6	At1g30070	839886	SGS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;MOPF	O.I.	C.G.	H.G.
29.0	99.7	98.0	At5g37670	833746	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	F:molecular_function unknown;P:response to heat;C:unknown;BPOFAM	O.I.	C.G.	H.G.
28.2	99.7	136.1	At5g25450	832619	ubiquinol-cytochrome C reductase complex 14 kDa protein, putative	F:ubiquinol-cytochrome-c reductase activity;P:mitochondrial electron transport, ubiquinol to cytochrome c;C:mitochondrion, mitochondrial respiratory chain complex III, membrane;MPFO	O.I.	C.G.	H.G.
25.7	99.7	263.0	At5g52640	835341	ATHSP90.1 (HEAT SHOCK PROTEIN 90.1)	Encodes a cytosolic heat shock protein AtHSP90.1. AtHSP90.1 interacts with disease resistance signaling components SGT1b and RAR1 and is required for RPS2-mediated resistance.	O.I.	C.G.	H.G.
24.8	99.6	94.1	At4g12400	826849	stress-inducible protein, putative	F:binding;P:response to high light intensity, response to hydrogen peroxide, response to heat, response to stress;C:cellular_component unknown;OBMPFAV	O.I.	C.G.	H.G.
24.8	99.6	58.2	At2g07731	3768662	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
24.8	99.6	33.0	At3g49160	824077	pyruvate kinase family protein	Expression of the gene is downregulated in the presence of paraquat, an inducer of photoxidative stress.	O.I.	C.G.	H.G.
21.5	99.6	126.4	At2g19310	816448	-	F:molecular_function unknown;P:response to oxidative stress, response to high light intensity, response to hydrogen peroxide, response to heat;C:unknown;PFO	O.I.	C.G.	H.G.
21.2	99.6	48.6	At5g50915	835164	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM	O.I.	C.G.	H.G.
21.0	99.6	196.3	At3g24500	822041	MBF1C (MULTIPROTEIN BRIDGING FACTOR 1C)	One of three genes in A. thaliana encoding multiprotein bridging factor 1, a highly conserved transcriptional coactivator. May serve as a bridging factor between a bZIP factor and TBP. Its expression is specifically elevated in response to pathogen infection, salinity, drought, heat, hydrogen peroxide, and application of abscisic acid or salicylic acid. Constitutive expression enhances the tolerance of transgenic plants to various biotic and abiotic stresses.	O.I.	C.G.	H.G.
21.0	99.6	48.0	At5g42760	834285	-	F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF	O.I.	C.G.	H.G.
20.8	99.6	21.3	At4g02550	827910	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PF	O.I.	C.G.	H.G.
20.6	99.6	160.7	At5g48570	834913	peptidyl-prolyl cis-trans isomerase, putative / FK506-binding protein, putative	F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity, calmodulin binding;P:protein folding;C:vacuole;BMOFPA	O.I.	C.G.	H.G.
20.1	99.6	36.9	At3g09640	820121	APX2 (ASCORBATE PEROXIDASE 2)	Encodes a cytosolic ascorbate peroxidase APX2. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.	O.I.	C.G.	H.G.
20.0	99.6	58.4	At5g47610	834811	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
19.7	99.6	64.9	At4g15420	827213	PRLI-interacting factor K	F:peptidase activity, zinc ion binding;P:proteolysis, ubiquitin-dependent protein catabolic process;C:intracellular;MOFPB	O.I.	C.G.	H.G.
18.3	99.5	104.0	At5g12110	831084	elongation factor 1B alpha-subunit 1 (eEF1Balpha1)	F:translation elongation factor activity;P:translational elongation;C:eukaryotic translation elongation factor 1 complex;MOPF	O.I.	C.G.	H.G.
18.1	99.5	190.5	At3g07090	819895	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOF	O.I.	C.G.	H.G.
17.6	99.5	6.5	At5g15250	831377	FTSH6 (FTSH PROTEASE 6)	Encodes an FtsH protease that is localized to the chloroplast. AtFtsH6 is involved in the degradation of both Lhcb3 and Lhcb1 during senescence and high-light acclimation.	O.I.	C.G.	H.G.
17.4	99.5	131.1	At5g09590	830818	MTHSC70-2 (MITOCHONDRIAL HSP70 2)	heat shock protein 70 (Hsc70-5); nuclear	O.I.	C.G.	H.G.
16.5	99.5	108.2	At2g29340	817483	short-chain dehydrogenase/reductase (SDR) family protein	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAV	O.I.	C.G.	H.G.
16.4	99.5	270.1	At3g22840	821855	ELIP1 (EARLY LIGHT-INDUCABLE PROTEIN)	Encodes an early light-inducible protein.	O.I.	C.G.	H.G.
16.4	99.5	88.5	At3g16050	820850	A37	Encodes a protein with pyridoxal phosphate synthase activity whose transcripts were detected mostly in roots and accumulate during senescence. The protein was found in very low abundance, which prevented a specific localisation.	O.I.	C.G.	H.G.
15.7	99.5	50.1	At4g31870	829316	ATGPX7 (glutathione peroxidase 7)	Encodes glutathione peroxidase.	O.I.	C.G.	H.G.
15.6	99.5	43.7	At2g24100	816944	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
15.6	99.5	31.9	At4g15680	827245	glutaredoxin family protein	F:electron carrier activity, arsenate reductase (glutaredoxin) activity, protein disulfide oxidoreductase activity;P:cell redox homeostasis;C:endomembrane system;MPFOB	O.I.	C.G.	H.G.
15.2	99.4	295.1	At3g12580	820438	HSP70 (heat shock protein 70)	F:ATP binding;P:in 8 processes;C:cytosol, mitochondrion, cell wall, plasma membrane;OBMFPVA	O.I.	C.G.	H.G.
15.1	99.4	102.9	At4g33660	829507	unknown protein	F:unknown;P:unknown;C:unknown;MPOFBVA	O.I.	C.G.	H.G.
14.8	99.4	20.0	At4g26150	828721	CGA1 (CYTOKININ-RESPONSIVE GATA FACTOR 1)	F:transcription factor activity;P:response to cytokinin stimulus;C:nucleus;FPOM	O.I.	C.G.	H.G.
14.7	99.4	26.6	At4g23493	828448	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
14.6	99.4	49.9	At3g17611	821028	ATRBL14 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 14)	F:zinc ion binding;P:biological_process unknown;C:integral to membrane, intracellular;BOPMFAV	O.I.	C.G.	H.G.
14.5	99.4	26.6	At3g10450	820209	SCPL7 (SERINE CARBOXYPEPTIDASE-LIKE 7)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
14.4	99.4	80.0	At5g51440	835218	23.5 kDa mitochondrial small heat shock protein (HSP23.5-M)	F:molecular_function unknown;P:response to heat;C:unknown;BPOAFM	O.I.	C.G.	H.G.
14.1	99.4	108.9	At1g02850	839435	BGLU11 (BETA GLUCOSIDASE 11)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
14.1	99.4	21.6	At5g23380	832402	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PO	O.I.	C.G.	H.G.
13.8	99.4	59.2	At5g58770	835991	dehydrodolichyl diphosphate synthase, putative / DEDOL-PP synthase, putative	F:dehydrodolichyl diphosphate synthase activity;P:dolichol biosynthetic process;C:chloroplast;OBAFMP	O.I.	C.G.	H.G.
13.7	99.4	23.5	At3g26630	822275	pentatricopeptide (PPR) repeat-containing protein	F:unknown;P:biological_process unknown;C:unknown;POFM	O.I.	C.G.	H.G.
13.6	99.4	33.2	At1g58340	842203	ZF14	F:drug transporter activity, antiporter activity, transporter activity;P:response to nematode;C:membrane;BOPFAM	O.I.	C.G.	H.G.
13.3	99.4	70.6	At1g18330	838413	EPR1 (EARLY-PHYTOCHROME-RESPONSIVE1)	EARLY-PHYTOCHROME-RESPONSIVE1	O.I.	C.G.	H.G.
13.1	99.4	9.8	At3g07150	819901	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
12.8	99.3	22.4	At1g62730	842571	transferase	F:transferase activity;P:biosynthetic process;C:unknown;BOMFP	O.I.	C.G.	H.G.
12.7	99.3	10.1	At2g36750	818247	UGT73C1 (UDP-GLUCOSYL TRANSFERASE 73C1)	F:cis-zeatin O-beta-D-glucosyltransferase activity, UDP-glycosyltransferase activity, UDP-glucosyltransferase activity, transferase activity, transferring glycosyl groups, trans-zeatin O-beta-D-glucosyltransferase activity;P:response to UV-B;C:unknown;PMVBOF	O.I.	C.G.	H.G.
12.6	99.3	73.6	At1g10170	837555	ATNFXL1 (ARABIDOPSIS THALIANA NF-X-LIKE 1)	Encodes AtNFXL1, a homologue of the putative human transcription repressor NF-X1. Functions as a negative regulator of the trichothecene phytotoxin-induced defense response.	O.I.	C.G.	H.G.
12.4	99.3	42.9	At2g33250	817887	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
12.2	99.3	20.7	At1g66080	842922	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	O.I.	C.G.	H.G.
12.1	99.3	54.6	At1g78290	844164	-	-	O.I.	C.G.	H.G.
12.0	99.3	82.1	At2g31380	817696	STH	a B-box zinc finger protein that interacts with COP1. contains a novel 11 amino acid motif at the C-terminus (also found at the N-terminus of HY5) that is involved in the COP1 interaction.	O.I.	C.G.	H.G.
12.0	99.3	33.3	At1g24340	839050	emb2421 (embryo defective 2421)	F:oxidoreductase activity, monooxygenase activity;P:embryonic development ending in seed dormancy;C:unknown;BOFPM	O.I.	C.G.	H.G.
11.5	99.3	33.9	At3g51910	824354	AT-HSFA7A	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
11.5	99.3	29.0	At1g53090	841743	SPA4 (SPA1-RELATED 4)	Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA4 (and SPA3) predominantly regulates elongation growth in adult plants.	O.I.	C.G.	H.G.
11.0	99.2	210.8	At4g14690	827119	ELIP2 (EARLY LIGHT-INDUCIBLE PROTEIN 2)	Encodes an early light-induced protein. ELIPs are thought not to be directly involved in the synthesis and assembly of specific photosynthetic complexes, but rather affect the biogenesis of all chlorophyll-binding complexes. A study (PMID 17553115) has shown that the chlorophyll synthesis pathway was downregulated as a result of constitutive ELIP2 expression, leading to decreased chlorophyll availability for the assembly of pigment-binding proteins for photosynthesis.	O.I.	C.G.	H.G.
10.8	99.2	111.5	At4g37760	829932	SQE3 (squalene epoxidase 3)	F:squalene monooxygenase activity;P:response to jasmonic acid stimulus, sterol biosynthetic process, response to wounding;C:endomembrane system, integral to membrane;BOFMPA	O.I.	C.G.	H.G.
10.8	99.2	51.1	At2g45950	819203	ASK20 (ARABIDOPSIS SKP1-LIKE 20)	F:ubiquitin-protein ligase activity, protein binding;P:ubiquitin-dependent protein catabolic process;C:SCF ubiquitin ligase complex;MPOFBV	O.I.	C.G.	H.G.
10.5	99.2	41.0	At4g37150	829869	MES9 (METHYL ESTERASE 9)	Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES9 appears to be involved in MeSA hydrolysis in planta. Expression of MES9 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.	O.I.	C.G.	H.G.
10.2	99.2	61.4	At3g62190	825392	DNAJ heat shock N-terminal domain-containing protein	F:heat shock protein binding;P:protein folding;C:cellular_component unknown;OBMPFA	O.I.	C.G.	H.G.
10.1	99.2	35.8	At3g21260	821680	glycolipid transfer protein-related	F:glycolipid transporter activity, glycolipid binding;P:glycolipid transport;C:cytoplasm;MFPO	O.I.	C.G.	H.G.
9.9	99.1	38.3	At5g39080	833900	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
9.8	99.1	35.8	At5g43170	834334	AZF3 (ARABIDOPSIS ZINC-FINGER PROTEIN 3)	Encodes zinc finger protein. mRNA levels are elevated in response to high salinity and low temperature. The protein is localized to the nucleus and acts as a transcriptional repressor.	O.I.	C.G.	H.G.
9.7	99.1	127.4	At3g56290	824796	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
9.7	99.1	117.4	At5g15450	831398	CLPB3 (CASEIN LYTIC PROTEINASE B3)	Encodes a chloroplast-targeted Hsp101 homologue. Functions as a molecular chaperone involved in plastid differentiation mediating internal thylakoid membrane formation and conferring thermotolerance to chloroplasts during heat stress. APG6 is constitutively expressed in the root tips, the organ boundary region, the reproductive tissues of mature plants where plastids exist as proplastids, and slightly in the stems and leaves. APG6 expression is upregulated in response to heat shock in various organs, but not in response to other abiotic stresses. Apg6 mutants have a pale-green phenotype.	O.I.	C.G.	H.G.
9.5	99.1	59.4	At5g24120	832477	SIGE (SIGMA FACTOR E)	Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes.	O.I.	C.G.	H.G.
9.4	99.1	39.1	At2g04050	814939	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
9.2	99.1	26.6	At5g56090	835708	COX15 (cytochrome c oxidase 15)	Encodes a homolog of COX15. Microarray analysis show a 3.2 fold increase in transcription after treatment with rotenone, an electron transport chain inhibitor.	O.I.	C.G.	H.G.
9.1	99.1	95.6	At4g25700	828675	BETA-OHASE 1 (BETA-HYDROXYLASE 1)	Converts beta-carotene to zeaxanthin via cryptoxanthin.	O.I.	C.G.	H.G.
9.1	99.1	15.5	At1g72660	843598	developmentally regulated GTP-binding protein, putative	F:GTP binding;P:unknown;C:intracellular;BOMAFP	O.I.	C.G.	H.G.
9.0	99.1	51.4	At3g51870	824350	binding / transporter	F:transporter activity, binding;P:transport, response to nematode;C:mitochondrial inner membrane, chloroplast, chloroplast envelope;MFPOV	O.I.	C.G.	H.G.
8.9	99.0	65.1	At5g11680	831040	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cytosol, plasma membrane;MOFP	O.I.	C.G.	H.G.
8.9	99.0	48.2	At2g26980	817240	CIPK3 (CBL-INTERACTING PROTEIN KINASE 3)	encodes a serine-threonine protein kinase whose expression increases in response to abscisic acid, cold, drought, high salt, and wounding conditions. The gene is expressed in developing seeds and seedlings. Lines carrying a T-DNA insertions have reduced germination efficiency and expression of cold, high-salt, and abscisic acid marker genes are altered, but not drought-response markers.	O.I.	C.G.	H.G.
8.8	99.0	56.5	At5g24460	832517	unknown protein	F:unknown;P:biological_process unknown;C:cell wall;PFO	O.I.	C.G.	H.G.
8.7	99.0	78.8	At2g07699	3768015	-	F:unknown;P:unknown;C:unknown	O.I.	C.G.	H.G.
8.7	99.0	16.8	At5g64950	836619	mitochondrial transcription termination factor-related / mTERF-related	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PMO	O.I.	C.G.	H.G.
8.6	99.0	97.1	At1g07350	837246	transformer serine/arginine-rich ribonucleoprotein, putative	F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA splicing;C:unknown;MPFOBVA	O.I.	C.G.	H.G.

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GSM ID	GSM133725
Assay name	McCormac_1-3_mutant-NFtreated_Rep1_ATH1
GSE experiment	GSE5726: Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts

Microarray experiments to specifically-expressed genes

GSM ID GSM133725 Assay name McCormac_1-3_mutant-NFtreated_Rep1_ATH1 GSE experiment GSE5726: Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts

GSM ID GSM133725

Assay name McCormac_1-3_mutant-NFtreated_Rep1_ATH1

GSE experiment GSE5726: Seedling transcriptome affected by Norflurazon-induced photobleaching of chloroplasts