CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133719

Assay name Deeken_A-1-Deeke-Tum_SLD_REP1

GSE experiment GSE5725: Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
409.0 100.0 59.1 At2g33020 817864 AtRLP24 (Receptor Like Protein 24) F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV O.I. C.G. H.G.
372.9 100.0 47.5 At5g04370 830316 NAMT1 A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid. O.I. C.G. H.G.
289.7 100.0 100.8 At1g31320 840020 LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4) F:unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
237.0 100.0 279.1 At3g27400 822361 pectate lyase family protein F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO O.I. C.G. H.G.
225.4 100.0 151.6 At3g43430 823423 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV O.I. C.G. H.G.
183.8 100.0 18.3 At1g67000 843018 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
148.0 99.9 151.9 At1g59740 842267 proton-dependent oligopeptide transport (POT) family protein F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF O.I. C.G. H.G.
130.9 99.9 251.6 At3g54820 824647 PIP2 F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV O.I. C.G. H.G.
122.8 99.9 51.5 At1g03620 839448 phagocytosis and cell motility protein ELMO1-related F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF O.I. C.G. H.G.
118.8 99.9 135.1 At2g17820 816291 ATHK1 (histidine kinase 1) Encodes a member of the histidine kinase family. O.I. C.G. H.G.
118.4 99.9 76.6 At5g48070 834859 XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20) putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow. O.I. C.G. H.G.
109.5 99.9 63.6 At5g28490 832941 LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1) Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner. O.I. C.G. H.G.
105.0 99.9 59.0 At5g23380 832402 unknown protein F:molecular_function unknown;P:biological_process unknown;C:membrane;PO O.I. C.G. H.G.
104.9 99.9 84.3 At5g19100 832030 extracellular dermal glycoprotein-related / EDGP-related F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P O.I. C.G. H.G.
103.4 99.9 185.7 At1g25530 839139 lysine and histidine specific transporter, putative F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA O.I. C.G. H.G.
102.1 99.9 28.4 At4g18630 827597 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF O.I. C.G. H.G.
96.3 99.9 68.1 At2g47950 819407 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
81.5 99.9 52.9 At4g30410 829164 transcription factor F:transcription factor activity;P:unknown;C:unknown;PO O.I. C.G. H.G.
81.5 99.9 39.3 At4g31020 829229 unknown protein F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVA O.I. C.G. H.G.
81.4 99.9 153.1 At5g38020 833781 S-adenosyl-L-methionine:carboxyl methyltransferase family protein encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus) O.I. C.G. H.G.
81.0 99.9 222.4 At4g36430 829795 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM O.I. C.G. H.G.
77.3 99.9 102.8 At4g33560 829495 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
74.7 99.9 40.1 At1g01010 839580 ANAC001 (Arabidopsis NAC domain containing protein 1) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
66.7 99.8 56.5 At5g53830 835464 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM O.I. C.G. H.G.
65.7 99.8 86.5 At1g10480 837588 ZFP5 (ZINC FINGER PROTEIN 5) Encodes a zinc finger protein containing only a single zinc finger. O.I. C.G. H.G.
65.6 99.8 62.4 At5g17980 831665 C2 domain-containing protein F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA O.I. C.G. H.G.
64.5 99.8 43.7 At2g45450 819153 ZPR1 (LITTLE ZIPPER 1) ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity. O.I. C.G. H.G.
63.4 99.8 106.3 At4g17470 827458 palmitoyl protein thioesterase family protein F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO O.I. C.G. H.G.
63.2 99.8 52.1 At2g37280 818305 PDR5 (PLEIOTROPIC DRUG RESISTANCE 5) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
61.6 99.8 49.4 At3g25640 822151 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
59.9 99.8 135.3 At3g29970 822700 germination protein-related F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
59.3 99.8 36.1 At5g48800 834938 phototropic-responsive NPH3 family protein F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P O.I. C.G. H.G.
59.2 99.8 17.4 At2g24010 816935 scpl23 (serine carboxypeptidase-like 23) F:serine-type carboxypeptidase activity;P:proteolysis;C:unknown;PMFOB O.I. C.G. H.G.
59.1 99.8 130.5 At1g03820 839400 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB O.I. C.G. H.G.
55.5 99.8 36.6 At4g15120 827178 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA O.I. C.G. H.G.
54.3 99.8 25.0 At2g31180 817674 MYB14 (MYB DOMAIN PROTEIN 14) Member of the R2R3 factor gene family. O.I. C.G. H.G.
52.9 99.8 113.0 At1g20070 838596 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
52.5 99.8 50.6 At4g13195 826934 CLE44 (CLAVATA3/ESR-RELATED 44) Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770). O.I. C.G. H.G.
51.2 99.8 51.5 At1g26730 839214 EXS family protein / ERD1/XPR1/SYG1 family protein F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB O.I. C.G. H.G.
50.6 99.8 73.7 At2g32990 817861 AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8) F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF O.I. C.G. H.G.
50.4 99.8 93.7 At3g02885 821194 GASA5 (GAST1 PROTEIN HOMOLOG 5) F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P O.I. C.G. H.G.
49.4 99.8 26.1 At1g55610 842010 BRL1 (BRI 1 LIKE) mutant has Altered vascular cell differentiation; LRR Receptor Kinase O.I. C.G. H.G.
49.1 99.8 58.8 At5g60200 836142 Dof-type zinc finger domain-containing protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO O.I. C.G. H.G.
48.8 99.8 29.6 At1g16530 838223 ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
48.3 99.8 44.1 At2g31160 817672 LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3) F:molecular_function unknown;P:biological_process unknown;C:unknown;PM O.I. C.G. H.G.
48.0 99.8 84.9 At5g50720 835144 ATHVA22E Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration. O.I. C.G. H.G.
47.4 99.8 16.7 At3g44560 823581 FAR8 (FATTY ACID REDUCTASE 8) F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFP O.I. C.G. H.G.
46.8 99.8 39.3 At1g18670 838448 IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1) Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do. O.I. C.G. H.G.
46.7 99.8 47.4 At1g66480 842966 PMI2 (plastid movement impaired 2) Involved in chloroplast avoidance movement under intermediate and high light intensities O.I. C.G. H.G.
45.2 99.8 170.3 At2g19970 816516 pathogenesis-related protein, putative F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO O.I. C.G. H.G.
44.1 99.8 68.6 At1g05710 837078 ethylene-responsive protein, putative F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P O.I. C.G. H.G.
42.0 99.8 200.1 At4g26870 828794 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP O.I. C.G. H.G.
41.5 99.8 341.8 At4g24780 828580 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFO O.I. C.G. H.G.
40.7 99.8 353.6 At3g18280 821356 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P O.I. C.G. H.G.
40.4 99.8 49.2 At5g53890 835470 leucine-rich repeat transmembrane protein kinase, putative Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation. O.I. C.G. H.G.
39.2 99.8 205.6 At3g43190 823393 SUS4 Encodes a protein with sucrose synthase activity (SUS4). O.I. C.G. H.G.
39.1 99.8 79.7 At5g52390 835315 photoassimilate-responsive protein, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
38.6 99.8 29.8 At4g22730 828369 leucine-rich repeat transmembrane protein kinase, putative F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
38.0 99.8 71.2 At1g68360 843165 zinc finger protein-related F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO O.I. C.G. H.G.
37.7 99.7 214.6 At5g54510 835539 DFL1 (DWARF IN LIGHT 1) Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3). O.I. C.G. H.G.
37.7 99.7 25.4 At1g79420 844280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.9 99.7 169.5 At3g54260 824593 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PM O.I. C.G. H.G.
36.0 99.7 115.0 At2g19990 816518 PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE) Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive. O.I. C.G. H.G.
35.6 99.7 138.1 At1g66690 842987 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
34.6 99.7 18.2 At1g59670 842257 ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
34.3 99.7 120.5 At4g30020 829125 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM O.I. C.G. H.G.
33.9 99.7 43.6 At3g24660 822062 TMKL1 (transmembrane kinase-like 1) member of Receptor kinase-like protein family O.I. C.G. H.G.
33.6 99.7 290.2 At1g28400 839738 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA O.I. C.G. H.G.
33.4 99.7 30.9 At5g57130 835819 protein binding F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM O.I. C.G. H.G.
33.1 99.7 289.7 At3g12500 820429 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. O.I. C.G. H.G.
33.0 99.7 149.8 At4g16370 827332 ATOPT3 (OLIGOPEPTIDE TRANSPORTER) Encodes an oligopeptide transporter involved in metal homeostasis. O.I. C.G. H.G.
33.0 99.7 135.0 At1g47400 841144 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.9 99.7 49.3 At5g24310 832498 ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
31.5 99.7 23.2 At1g20270 838615 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV O.I. C.G. H.G.
30.8 99.7 43.6 At2g28660 817415 copper-binding family protein F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF O.I. C.G. H.G.
30.7 99.7 14.9 At2g31900 817748 XIF Encodes an novel myosin isoform. O.I. C.G. H.G.
30.2 99.7 31.8 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF O.I. C.G. H.G.
29.8 99.7 96.9 At5g13330 831174 Rap2.6L (related to AP2 6L) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
29.6 99.7 86.7 At5g44400 834466 FAD-binding domain-containing protein F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAM O.I. C.G. H.G.
29.4 99.7 48.4 At4g28140 828929 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4. O.I. C.G. H.G.
29.0 99.7 32.2 At1g32960 840190 SBT3.3 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFM O.I. C.G. H.G.
28.9 99.7 65.7 At5g66440 836776 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POM O.I. C.G. H.G.
28.6 99.7 21.2 At2g26290 817169 ARSK1 (root-specific kinase 1) F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA O.I. C.G. H.G.
28.2 99.7 37.7 At5g19260 832046 unknown protein F:unknown;P:unknown;C:unknown;MOFPBV O.I. C.G. H.G.
27.7 99.7 43.7 At3g48450 824004 nitrate-responsive NOI protein, putative F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO O.I. C.G. H.G.
27.7 99.7 22.1 At3g04510 819607 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM O.I. C.G. H.G.
27.5 99.7 18.5 At4g16790 827385 hydroxyproline-rich glycoprotein family protein F:unknown;P:unknown;C:unknown;MPFOBVA O.I. C.G. H.G.
27.4 99.7 54.2 At4g35110 829663 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA O.I. C.G. H.G.
27.0 99.7 21.1 At5g03680 831757 PTL (PETAL LOSS) Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs. O.I. C.G. H.G.
26.7 99.7 101.6 At1g78490 844185 CYP708A3 member of CYP708A O.I. C.G. H.G.
26.6 99.7 112.1 At1g03610 838961 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
26.3 99.7 81.4 At2g29460 817495 ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
25.7 99.7 32.5 At2g41780 818777 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
25.5 99.7 109.1 At1g69295 843261 PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4) Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose. O.I. C.G. H.G.
25.5 99.7 71.5 At2g47260 819339 WRKY23 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
25.3 99.6 19.5 At2g18500 816365 OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7) F:unknown;P:biological_process unknown;C:plasma membrane;PFO O.I. C.G. H.G.
25.1 99.6 12.6 At1g30515 839931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
25.0 99.6 33.4 At2g20850 816618 SRF1 (strubbelig receptor family 1) F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA O.I. C.G. H.G.
24.8 99.6 60.7 At5g10040 830868 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
24.4 99.6 7.3 At4g11480 826753 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
409.0	100.0	59.1	At2g33020	817864	AtRLP24 (Receptor Like Protein 24)	F:protein binding, kinase activity;P:signal transduction;C:endomembrane system;PMOBFAV	O.I.	C.G.	H.G.
372.9	100.0	47.5	At5g04370	830316	NAMT1	A member of the Arabidopsis SABATH methyltransferase gene family. Encodes NAMT1, a methyltransferase that methylates nicotinic acid.	O.I.	C.G.	H.G.
289.7	100.0	100.8	At1g31320	840020	LBD4 (LOB DOMAIN-CONTAINING PROTEIN 4)	F:unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
237.0	100.0	279.1	At3g27400	822361	pectate lyase family protein	F:pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO	O.I.	C.G.	H.G.
225.4	100.0	151.6	At3g43430	823423	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV	O.I.	C.G.	H.G.
183.8	100.0	18.3	At1g67000	843018	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase	F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
148.0	99.9	151.9	At1g59740	842267	proton-dependent oligopeptide transport (POT) family protein	F:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOF	O.I.	C.G.	H.G.
130.9	99.9	251.6	At3g54820	824647	PIP2	F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAV	O.I.	C.G.	H.G.
122.8	99.9	51.5	At1g03620	839448	phagocytosis and cell motility protein ELMO1-related	F:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOF	O.I.	C.G.	H.G.
118.8	99.9	135.1	At2g17820	816291	ATHK1 (histidine kinase 1)	Encodes a member of the histidine kinase family.	O.I.	C.G.	H.G.
118.4	99.9	76.6	At5g48070	834859	XTH20 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20)	putative xyloglucan endotransglycosylase/hydrolase, expressed primarily in the stele of mature non-elongating regions of both the main and the lateral root. Is expressed in lateral root primordia but expression ceases after lateral root begins to grow.	O.I.	C.G.	H.G.
109.5	99.9	63.6	At5g28490	832941	LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)	Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.	O.I.	C.G.	H.G.
105.0	99.9	59.0	At5g23380	832402	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:membrane;PO	O.I.	C.G.	H.G.
104.9	99.9	84.3	At5g19100	832030	extracellular dermal glycoprotein-related / EDGP-related	F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;P	O.I.	C.G.	H.G.
103.4	99.9	185.7	At1g25530	839139	lysine and histidine specific transporter, putative	F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;PMFOBA	O.I.	C.G.	H.G.
102.1	99.9	28.4	At4g18630	827597	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;PMOF	O.I.	C.G.	H.G.
96.3	99.9	68.1	At2g47950	819407	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
81.5	99.9	52.9	At4g30410	829164	transcription factor	F:transcription factor activity;P:unknown;C:unknown;PO	O.I.	C.G.	H.G.
81.5	99.9	39.3	At4g31020	829229	unknown protein	F:unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OBMPFVA	O.I.	C.G.	H.G.
81.4	99.9	153.1	At5g38020	833781	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	encodes a protein whose sequence is similar to SAM:salicylic acid carboxyl methyltransferase (SAMT) (GI:6002712)(Clarkia breweri) and to SAM:benzoic acid carboxyl methyltransferase (BAMT)(GI:9789277)(Antirrhinum majus)	O.I.	C.G.	H.G.
81.0	99.9	222.4	At4g36430	829795	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBM	O.I.	C.G.	H.G.
77.3	99.9	102.8	At4g33560	829495	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
74.7	99.9	40.1	At1g01010	839580	ANAC001 (Arabidopsis NAC domain containing protein 1)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
66.7	99.8	56.5	At5g53830	835464	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBM	O.I.	C.G.	H.G.
65.7	99.8	86.5	At1g10480	837588	ZFP5 (ZINC FINGER PROTEIN 5)	Encodes a zinc finger protein containing only a single zinc finger.	O.I.	C.G.	H.G.
65.6	99.8	62.4	At5g17980	831665	C2 domain-containing protein	F:unknown;P:unknown;C:endoplasmic reticulum, plasma membrane;MOBFPVA	O.I.	C.G.	H.G.
64.5	99.8	43.7	At2g45450	819153	ZPR1 (LITTLE ZIPPER 1)	ZPR1, a small leucine zipper-containing protein that interacts with REV HD-ZIPIII and is involved in the establishment of leaf polarity.	O.I.	C.G.	H.G.
63.4	99.8	106.3	At4g17470	827458	palmitoyl protein thioesterase family protein	F:palmitoyl-(protein) hydrolase activity;P:protein modification process;C:endomembrane system;MPFO	O.I.	C.G.	H.G.
63.2	99.8	52.1	At2g37280	818305	PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)	F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
61.6	99.8	49.4	At3g25640	822151	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
59.9	99.8	135.3	At3g29970	822700	germination protein-related	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
59.3	99.8	36.1	At5g48800	834938	phototropic-responsive NPH3 family protein	F:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;P	O.I.	C.G.	H.G.
59.2	99.8	17.4	At2g24010	816935	scpl23 (serine carboxypeptidase-like 23)	F:serine-type carboxypeptidase activity;P:proteolysis;C:unknown;PMFOB	O.I.	C.G.	H.G.
59.1	99.8	130.5	At1g03820	839400	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OPFMB	O.I.	C.G.	H.G.
55.5	99.8	36.6	At4g15120	827178	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;POMFA	O.I.	C.G.	H.G.
54.3	99.8	25.0	At2g31180	817674	MYB14 (MYB DOMAIN PROTEIN 14)	Member of the R2R3 factor gene family.	O.I.	C.G.	H.G.
52.9	99.8	113.0	At1g20070	838596	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
52.5	99.8	50.6	At4g13195	826934	CLE44 (CLAVATA3/ESR-RELATED 44)	Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).	O.I.	C.G.	H.G.
51.2	99.8	51.5	At1g26730	839214	EXS family protein / ERD1/XPR1/SYG1 family protein	F:unknown;P:unknown;C:integral to membrane, plasma membrane;FMPOB	O.I.	C.G.	H.G.
50.6	99.8	73.7	At2g32990	817861	AtGH9B8 (Arabidopsis thaliana glycosyl hydrolase 9B8)	F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOF	O.I.	C.G.	H.G.
50.4	99.8	93.7	At3g02885	821194	GASA5 (GAST1 PROTEIN HOMOLOG 5)	F:unknown;P:response to gibberellin stimulus;C:endomembrane system;P	O.I.	C.G.	H.G.
49.4	99.8	26.1	At1g55610	842010	BRL1 (BRI 1 LIKE)	mutant has Altered vascular cell differentiation; LRR Receptor Kinase	O.I.	C.G.	H.G.
49.1	99.8	58.8	At5g60200	836142	Dof-type zinc finger domain-containing protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PO	O.I.	C.G.	H.G.
48.8	99.8	29.6	At1g16530	838223	ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
48.3	99.8	44.1	At2g31160	817672	LSH3 (LIGHT SENSITIVE HYPOCOTYLS 3)	F:molecular_function unknown;P:biological_process unknown;C:unknown;PM	O.I.	C.G.	H.G.
48.0	99.8	84.9	At5g50720	835144	ATHVA22E	Encodes one of five HVA22 homologs in Arabidopsis. HVA22 is an ABA- and stress-inducible gene first isolated from barley. Members of this gene family have only been found in eukaryotes. AtHVA22e mRNA is upregulated to varying degrees in response to cold stress, salt stress, ABA treatment or dehydration.	O.I.	C.G.	H.G.
47.4	99.8	16.7	At3g44560	823581	FAR8 (FATTY ACID REDUCTASE 8)	F:oxidoreductase activity, acting on the CH-CH group of donors, fatty acyl-CoA reductase (alcohol-forming) activity;P:microsporogenesis, metabolic process;C:endomembrane system;MBOFP	O.I.	C.G.	H.G.
46.8	99.8	39.3	At1g18670	838448	IBS1 (IMPAIRED IN BABA-INDUCED STERILITY 1)	Encodes a cyclin-dependent kinase-like protein with a ser/thr protein kinase domain and an N-terminal myristoylation sequence. Mutants in this gene are unable to express female sterility in response to beta-aminobutyric acid, as wild type plants do.	O.I.	C.G.	H.G.
46.7	99.8	47.4	At1g66480	842966	PMI2 (plastid movement impaired 2)	Involved in chloroplast avoidance movement under intermediate and high light intensities	O.I.	C.G.	H.G.
45.2	99.8	170.3	At2g19970	816516	pathogenesis-related protein, putative	F:molecular_function unknown;P:biological_process unknown;C:extracellular region;MPFBO	O.I.	C.G.	H.G.
44.1	99.8	68.6	At1g05710	837078	ethylene-responsive protein, putative	F:transcription factor activity;P:response to ethylene stimulus, regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
42.0	99.8	200.1	At4g26870	828794	aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative	F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP	O.I.	C.G.	H.G.
41.5	99.8	341.8	At4g24780	828580	pectate lyase family protein	F:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFO	O.I.	C.G.	H.G.
40.7	99.8	353.6	At3g18280	821356	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:endomembrane system;P	O.I.	C.G.	H.G.
40.4	99.8	49.2	At5g53890	835470	leucine-rich repeat transmembrane protein kinase, putative	Encodes a leucine-rich repeat receptor kinase (LRR-RK) involved in the perception of phytosulfokine (PSK), which is a 5-aa tyrosine-sulfated peptide that primarily promotes cellular proliferation.	O.I.	C.G.	H.G.
39.2	99.8	205.6	At3g43190	823393	SUS4	Encodes a protein with sucrose synthase activity (SUS4).	O.I.	C.G.	H.G.
39.1	99.8	79.7	At5g52390	835315	photoassimilate-responsive protein, putative	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
38.6	99.8	29.8	At4g22730	828369	leucine-rich repeat transmembrane protein kinase, putative	F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
38.0	99.8	71.2	At1g68360	843165	zinc finger protein-related	F:transcription factor activity;P:regulation of transcription;C:intracellular;PMO	O.I.	C.G.	H.G.
37.7	99.7	214.6	At5g54510	835539	DFL1 (DWARF IN LIGHT 1)	Encodes an IAA-amido synthase that conjugates Ala, Asp, Phe, and Trp to auxin. Lines overexpressing this gene accumulate IAA-ASP and are hypersensitive to several auxins. Identified as a dominant mutation that displays shorter hypocotyls in light grown plants when compared to wild type siblings. Protein is similar to auxin inducible gene from pea (GH3).	O.I.	C.G.	H.G.
37.7	99.7	25.4	At1g79420	844280	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.9	99.7	169.5	At3g54260	824593	unknown protein	F:unknown;P:biological_process unknown;C:endomembrane system;PM	O.I.	C.G.	H.G.
36.0	99.7	115.0	At2g19990	816518	PR-1-LIKE (PATHOGENESIS-RELATED PROTEIN-1-LIKE)	Encodes a PR-1-like protein homolog that is differentially expressed in resistant compared to susceptible cultivars by powdery mildew infection. The deduced amino acid sequence has 24 amino acids comprising the signal peptide and 140 amino acids of the mature peptide (15 kDa). Northern blot analysis showed accumulation of the corresponding mRNA 12 h after inoculation of resistant barley cultivars with Erysiphe graminis. Though the Genbank record for the cDNA associated to this gene model is called 'PR-1', the sequence actually corresponds to PR-1-like. Expression of this gene is not salicylic-acid responsive.	O.I.	C.G.	H.G.
35.6	99.7	138.1	At1g66690	842987	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
34.6	99.7	18.2	At1g59670	842257	ATGSTU15 (GLUTATHIONE S-TRANSFERASE TAU 15)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
34.3	99.7	120.5	At4g30020	829125	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system, cell wall, membrane;BPOFAM	O.I.	C.G.	H.G.
33.9	99.7	43.6	At3g24660	822062	TMKL1 (transmembrane kinase-like 1)	member of Receptor kinase-like protein family	O.I.	C.G.	H.G.
33.6	99.7	290.2	At1g28400	839738	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVA	O.I.	C.G.	H.G.
33.4	99.7	30.9	At5g57130	835819	protein binding	F:protein binding;P:protein metabolic process;C:cellular_component unknown;PBOAM	O.I.	C.G.	H.G.
33.1	99.7	289.7	At3g12500	820429	ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE)	encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses.	O.I.	C.G.	H.G.
33.0	99.7	149.8	At4g16370	827332	ATOPT3 (OLIGOPEPTIDE TRANSPORTER)	Encodes an oligopeptide transporter involved in metal homeostasis.	O.I.	C.G.	H.G.
33.0	99.7	135.0	At1g47400	841144	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.9	99.7	49.3	At5g24310	832498	ABIL3 (ABL INTERACTOR-LIKE PROTEIN 3)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
31.5	99.7	23.2	At1g20270	838615	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFV	O.I.	C.G.	H.G.
30.8	99.7	43.6	At2g28660	817415	copper-binding family protein	F:copper ion binding, metal ion binding;P:copper ion transport, metal ion transport;C:chloroplast;OPMBF	O.I.	C.G.	H.G.
30.7	99.7	14.9	At2g31900	817748	XIF	Encodes an novel myosin isoform.	O.I.	C.G.	H.G.
30.2	99.7	31.8	At4g39720	830127	VQ motif-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF	O.I.	C.G.	H.G.
29.8	99.7	96.9	At5g13330	831174	Rap2.6L (related to AP2 6L)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
29.6	99.7	86.7	At5g44400	834466	FAD-binding domain-containing protein	F:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAM	O.I.	C.G.	H.G.
29.4	99.7	48.4	At4g28140	828929	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-6 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 8 members in this subfamily including RAP2.4.	O.I.	C.G.	H.G.
29.0	99.7	32.2	At1g32960	840190	SBT3.3	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast, plant-type cell wall;BPOAFM	O.I.	C.G.	H.G.
28.9	99.7	65.7	At5g66440	836776	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;POM	O.I.	C.G.	H.G.
28.6	99.7	21.2	At2g26290	817169	ARSK1 (root-specific kinase 1)	F:kinase activity;P:response to salt stress, response to water deprivation, response to abscisic acid stimulus;C:unknown;MPOBFVA	O.I.	C.G.	H.G.
28.2	99.7	37.7	At5g19260	832046	unknown protein	F:unknown;P:unknown;C:unknown;MOFPBV	O.I.	C.G.	H.G.
27.7	99.7	43.7	At3g48450	824004	nitrate-responsive NOI protein, putative	F:molecular_function unknown;P:response to nitrate;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
27.7	99.7	22.1	At3g04510	819607	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PM	O.I.	C.G.	H.G.
27.5	99.7	18.5	At4g16790	827385	hydroxyproline-rich glycoprotein family protein	F:unknown;P:unknown;C:unknown;MPFOBVA	O.I.	C.G.	H.G.
27.4	99.7	54.2	At4g35110	829663	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBVFA	O.I.	C.G.	H.G.
27.0	99.7	21.1	At5g03680	831757	PTL (PETAL LOSS)	Recessive mutations are defective in organ initiation and orientation in the second whorl. This gene encodes a trihelix transcription factor whose expression is limited to margins of floral and vegetative organs. Overexpression and double mutant analyses suggest that this gene is involved in limiting lateral growth of organs.	O.I.	C.G.	H.G.
26.7	99.7	101.6	At1g78490	844185	CYP708A3	member of CYP708A	O.I.	C.G.	H.G.
26.6	99.7	112.1	At1g03610	838961	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
26.3	99.7	81.4	At2g29460	817495	ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
25.7	99.7	32.5	At2g41780	818777	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
25.5	99.7	109.1	At1g69295	843261	PDCB4 (PLASMODESMATA CALLOSE-BINDING PROTEIN 4)	Encodes a member of the X8-GPI family of proteins. It localizes to the plasmodesmata and is predicted to bind callose.	O.I.	C.G.	H.G.
25.5	99.7	71.5	At2g47260	819339	WRKY23	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
25.3	99.6	19.5	At2g18500	816365	OFP7 (ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 7)	F:unknown;P:biological_process unknown;C:plasma membrane;PFO	O.I.	C.G.	H.G.
25.1	99.6	12.6	At1g30515	839931	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
25.0	99.6	33.4	At2g20850	816618	SRF1 (strubbelig receptor family 1)	F:kinase activity;P:protein amino acid phosphorylation;C:plasma membrane;PMOBFVA	O.I.	C.G.	H.G.
24.8	99.6	60.7	At5g10040	830868	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
24.4	99.6	7.3	At4g11480	826753	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.

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GSM ID	GSM133719
Assay name	Deeken_A-1-Deeke-Tum_SLD_REP1
GSE experiment	GSE5725: Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana

Microarray experiments to specifically-expressed genes

GSM ID GSM133719 Assay name Deeken_A-1-Deeke-Tum_SLD_REP1 GSE experiment GSE5725: Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana

GSM ID GSM133719

Assay name Deeken_A-1-Deeke-Tum_SLD_REP1

GSE experiment GSE5725: Agrobacterium tumefaciens-induced tumour development of Arabidopsis thaliana