Microarray experiments to specifically-expressed genes

GSM ID GSM133718
Assay name Urwin_A-2-Urwin-Inf_SLD
GSE experiment GSE5724: Plant gene expression associated with susceptibility to nematodes

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
551.8100.096.3At5g43360834354PHT3 (PHOSPHATE TRANSPORTER 3)phosphate transporterO.I.C.G.H.G.
397.4100.0141.1At4g14060827042major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
198.2100.025.2At2g27240817266unknown proteinF:unknown;P:biological_process unknown;C:unknown;PBOFO.I.C.G.H.G.
125.999.983.7At1g14240837985nucleoside phosphatase family protein / GDA1/CD39 family proteinF:hydrolase activity;P:biological_process unknown;C:cellular_component unknown;MFPOBO.I.C.G.H.G.
125.799.9261.9At2g43360818937BIO2 (BIOTIN AUXOTROPH 2)Catalyzes the conversion of dethiobiotin to biotin.O.I.C.G.H.G.
98.399.947.2At4g13280826958TPS12 (TERPENOID SYNTHASE 12)Catalyzes the conversion of farnesyl diphosphate to (Z)-gamma-bisabolene and the additional minor products E-nerolidol and alpha-bisabolol. Expressed in cortex and sub-epidermal layers of roots, leaf hydathodes and flower stigmata. Induced by wounding.O.I.C.G.H.G.
76.999.949.9At3g61530825326PANB2Encodes a ketopentoate hydroxymethyltransferase that appears to localize to the mitochondria. This protein is expected to play a role in pantothenate (vitamin B5) biosynthesis.O.I.C.G.H.G.
66.699.8347.2At4g11310826733cysteine proteinase, putativecysteine proteinase precursor-like proteinO.I.C.G.H.G.
65.499.8233.1At3g45160823652unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
57.299.822.7At1g11450837687nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMO.I.C.G.H.G.
55.099.8207.0At3g54260824593unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PMO.I.C.G.H.G.
54.599.862.1At5g01340831479mitochondrial substrate carrier family proteinF:transporter activity, binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPOO.I.C.G.H.G.
50.199.856.7At2g41300818729strictosidine synthaseF:strictosidine synthase activity;P:alkaloid biosynthetic process, biosynthetic process;C:endomembrane system;PMBOAO.I.C.G.H.G.
43.399.8200.0At2g47180819331AtGolS1 (Arabidopsis thaliana galactinol synthase 1)F:transferase activity, transferring hexosyl groups, transferase activity, transferring glycosyl groups;P:response to high light intensity, response to hydrogen peroxide, carbohydrate biosynthetic process, response to heat;C:cellular_component unknown;PMFVBOO.I.C.G.H.G.
42.399.8442.7At2g01520814681MLP328 (MLP-LIKE PROTEIN 328)F:copper ion binding;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
40.899.868.6At5g56640835765MIOX5Myo-Inositol Oxygenase gene familyO.I.C.G.H.G.
37.099.7171.9At2g18370816352protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinPredicted to encode a PR (pathogenesis-related) protein. Belongs to the lipid transfer protein (PR-14) family with the following members: At2g38540/LTP1, At2g38530/LTP2, At5g59320/LTP3, At5g59310/LTP4, At3g51600/LTP5, At3g08770/LTP6, At2g15050/LTP7, At2g18370/LTP8, At2g15325/LTP9, At5g01870/LTP10, At4g33355/LTP11, At3g51590/LTP12, At5g44265/LTP13, At5g62065/LTP14, At4g08530/LTP15.O.I.C.G.H.G.
36.799.741.2At3g25560822143NIK2 (NSP-INTERACTING KINASE 2)F:protein binding, protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
35.099.776.2At2g39510818536nodulin MtN21 family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, membrane;BOPAMO.I.C.G.H.G.
34.299.7783.7At1g73330843668ATDR4encodes a plant-specific protease inhibitor-like protein whose transcript level in root disappears in response to progressive drought stress. The decrease in transcript level is independent from abscisic acid level.O.I.C.G.H.G.
34.099.7498.4At2g24940817032AtMAPR2 (Arabidopsis thaliana membrane-associated progesterone binding protein 2)F:heme binding;P:unknown;C:cellular_component unknown;MFPOBAO.I.C.G.H.G.
32.399.7284.6At1g28400839738unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAO.I.C.G.H.G.
28.999.7132.9At4g36430829795peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to other organism;C:cell wall;PFOBMO.I.C.G.H.G.
28.899.7259.5At5g05960830481protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
28.599.721.7At4g37970829953CAD6 (CINNAMYL ALCOHOL DEHYDROGENASE 6)F:oxidoreductase activity, binding, catalytic activity, zinc ion binding;P:oxidation reduction, metabolic process;C:cellular_component unknown;BOPFMAVO.I.C.G.H.G.
27.699.7188.2At2g21130816648peptidyl-prolyl cis-trans isomerase / cyclophilin (CYP2) / rotamaseF:peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:plasma membrane;OBMFPAVO.I.C.G.H.G.
26.899.7154.4At4g29080829029PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)phytochrome-associated protein 2 (PAP2)O.I.C.G.H.G.
25.999.779.9At4g34600829612unknown proteinF:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
25.799.770.0At1g08430837363ALMT1 (ALUMINUM-ACTIVATED MALATE TRANSPORTER 1)Encodes a Al-activated malate efflux transporter. Is essential for aluminum tolerance but does not represent the major Al tolerance QTL. Staurosporine and calyculin A both block all changes in AtALMT1 gene expression (as a result malate release is totally inhibited).O.I.C.G.H.G.
25.799.761.8At5g63560836475transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
24.399.6261.8At4g24780828580pectate lyase family proteinF:lyase activity, pectate lyase activity;P:biological_process unknown;C:membrane;PBFOO.I.C.G.H.G.
23.199.672.7At3g16500820898PAP1 (PHYTOCHROME-ASSOCIATED PROTEIN 1)phytochrome-associated protein 1 (PAP1)O.I.C.G.H.G.
22.999.6137.0At3g58550825024protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PO.I.C.G.H.G.
22.899.618.8At1g52700841703phospholipase/carboxylesterase family proteinF:hydrolase activity, carboxylesterase activity;P:biological_process unknown;C:unknown;BOMFPAO.I.C.G.H.G.
22.499.658.5At1g141208379712-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFMO.I.C.G.H.G.
22.199.622.0At5g48800834938phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:plasma membrane;PO.I.C.G.H.G.
21.799.621.7At3g56620824829integral membrane family protein / nodulin MtN21-relatedF:unknown;P:unknown;C:membrane;BPOAMO.I.C.G.H.G.
21.599.615.4At2g23950816928leucine-rich repeat family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
21.499.656.5At1g47960841214C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)Plant cell wall (CWI) and vacuolar invertases (VI) play important roles in carbohydrate metabolism, stress responses and sugar signaling.O.I.C.G.H.G.
21.499.622.2At5g07800830673flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
21.399.673.5At5g44400834466FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:cell wall;BFOPAMO.I.C.G.H.G.
21.199.6137.3At2g19800816499MIOX2 (MYO-INOSITOL OXYGENASE 2)Encodes a myo-inositol oxygenase family gene.O.I.C.G.H.G.
20.999.653.5At4g33560829495unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
20.799.615.4At3g19270821461CYP707A4Encodes a protein with ABA 8'-hydroxylase activity, involved in ABA catabolism. Member of the CYP707A gene family.O.I.C.G.H.G.
20.599.627.2At1g69230843254SP1L2 (SPIRAL1-LIKE2)SPIRAL1-LIKE2 belongs to a six-member gene family in Arabidopsis; all members share a high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root and organ growth as a result of defective anisotropic cell expansion.O.I.C.G.H.G.
20.499.611.5At3g62740825449BGLU7 (BETA GLUCOSIDASE 7)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFAO.I.C.G.H.G.
20.199.6112.7At4g27652828877unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
19.999.624.4At1g35250840414thioesterase family proteinF:hydrolase activity, acting on ester bonds, acyl-CoA thioesterase activity;P:biological_process unknown;C:cellular_component unknown;BOPAO.I.C.G.H.G.
19.899.623.2At3g58790825048GAUT15 (Galacturonosyltransferase 15)Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
19.799.626.1At5g44350834461ethylene-responsive nuclear protein -relatedF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POBO.I.C.G.H.G.
19.299.613.5At1g67710843096ARR11 (RESPONSE REGULATOR 11)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.O.I.C.G.H.G.
19.099.5243.2At1g18210838401calcium-binding protein, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane, vacuole;MFPOBO.I.C.G.H.G.
18.999.546.4At1g10480837588ZFP5 (ZINC FINGER PROTEIN 5)Encodes a zinc finger protein containing only a single zinc finger.O.I.C.G.H.G.
18.799.5222.9At4g04830825820methionine sulfoxide reductase domain-containing protein / SeIR domain-containing proteinF:peptide-methionine-(S)-S-oxide reductase activity;P:biological_process unknown;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
18.799.528.3At2g37280818305PDR5 (PLEIOTROPIC DRUG RESISTANCE 5)F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane;BOMAFPVO.I.C.G.H.G.
18.799.55.8At4g13190826933ATP binding / kinase/ protein kinase/ protein serine/threonine kinaseF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
18.299.543.4At4g31730829301GDU1 (GLUTAMINE DUMPER 1)Glutamine dumper1 is a putative transmembrane protein. It is involved in glutamine secretionO.I.C.G.H.G.
17.999.587.5At2g18050816317HIS1-3 (HISTONE H1-3)encodes a structurally divergent linker histone whose gene expression is induced by dehydration and ABA.O.I.C.G.H.G.
17.799.519.5At1g03620839448phagocytosis and cell motility protein ELMO1-relatedF:molecular_function unknown;P:phagocytosis;C:cytoskeleton;MPOFO.I.C.G.H.G.
17.099.530.8At3g26460822251major latex protein-related / MLP-relatedF:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;PO.I.C.G.H.G.
16.899.5195.9At1g066408371732-oxoglutarate-dependent dioxygenase, putativeencodes a protein whose sequence is similar to a 2-oxoglutarate-dependent dioxygenaseO.I.C.G.H.G.
16.799.524.8At5g28490832941LSH1 (LIGHT-DEPENDENT SHORT HYPOCOTYLS 1)Encodes a nuclear protein that mediates light regulation of seedling development in a phytochrome-dependent manner.O.I.C.G.H.G.
16.699.522.9At4g22160828305unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
16.399.551.3At1g01640839534speckle-type POZ protein-relatedF:protein binding;P:biological_process unknown;C:cellular_component unknown;MPOVFO.I.C.G.H.G.
16.399.513.6At1g10750837618unknown proteinF:unknown;P:N-terminal protein myristoylation;C:unknown;PFBO.I.C.G.H.G.
16.199.5222.5At3g18280821356protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:endomembrane system;PO.I.C.G.H.G.
16.199.540.9At3g55500824715ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)expansin-like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.O.I.C.G.H.G.
15.999.547.9At4g03960825706tyrosine specific protein phosphatase family proteinF:phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity;P:dephosphorylation;C:cellular_component unknown;FPOBMO.I.C.G.H.G.
15.799.5128.1At4g02290828080AtGH9B13 (Arabidopsis thaliana glycosyl hydrolase 9B13)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFO.I.C.G.H.G.
15.599.529.0At5g65970836727MLO10 (MILDEW RESISTANCE LOCUS O 10)A member of a large family of seven-transmembrane domain proteins specific to plants, homologs of the barley mildew resistance locus o (MLO) protein. The Arabidopsis genome contains 15 genes encoding MLO proteins, with localization in plasma membrane. Phylogenetic analysis revealed four clades of closely-related AtMLO genes. ATMLO10 belongs to the clade III, with AtMLO5, AtMLO7, AtMLO8, and AtMLO9. The gene is expressed in root and cotyledon vascular system, in root-shoot junction and lateral root primordia and in developing siliques, as shown by GUS activity patterns. The expression of several phylogenetically closely-related AtMLO genes showed similar or overlapping tissue specificity and analogous responsiveness to external stimuli, suggesting functional redundancy, co-function, or antagonistic function(sO.I.C.G.H.G.
15.199.410.7At4g17710827492HDG4 (HOMEODOMAIN GLABROUS 4)Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.O.I.C.G.H.G.
15.099.4134.3At1g27030839592unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOPO.I.C.G.H.G.
14.999.443.3At1g01070839550nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BPOAFMO.I.C.G.H.G.
14.999.413.9At1g77520844088O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
14.799.453.8At2g40900818687nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;BOPAMO.I.C.G.H.G.
14.599.4375.6At5g24770832546VSP2 (VEGETATIVE STORAGE PROTEIN 2)Has acid phosphatase activity dependent on the presence of divalent cations (Mg2+, Co2+, Zn2+, Mn2+) and anti-insect activity. Insects fed with the protein show a retarded development. Induced in response to abscisic acid, jasmonic acid, salt, water deficiency and wounding.O.I.C.G.H.G.
14.599.477.3At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMO.I.C.G.H.G.
14.599.463.9At2g44460819053BGLU28 (BETA GLUCOSIDASE 28)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:membrane;BOPMFAO.I.C.G.H.G.
14.599.426.4At4g23493828448unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.499.417.0At5g38280833810PR5Kputative receptor serine/threonine kinase PR5K (PR5K) mRNA, PR5-like receptor kinaseO.I.C.G.H.G.
14.399.447.8At5g24090832474acidic endochitinase (CHIB1)F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PFBMOO.I.C.G.H.G.
14.399.447.4At2g04800815024unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
14.399.411.1At1g66020842915terpene synthase/cyclase family proteinF:lyase activity, magnesium ion binding;P:metabolic process;C:unknown;POBO.I.C.G.H.G.
14.299.439.5At2g18140816327peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cell wall;PFOBMO.I.C.G.H.G.
14.299.416.3At1g58170842184disease resistance-responsive protein-related / dirigent protein-relatedF:molecular_function unknown;P:N-terminal protein myristoylation, lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
14.099.413.8At2g35150818081EXL1 (EXORDIUM LIKE 1)F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PBO.I.C.G.H.G.
13.999.457.7At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
13.999.425.9At2g47950819407unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
13.999.415.1At1g13600837921AtbZIP58 (Arabidopsis thaliana basic leucine-zipper 58)F:transcription factor activity, protein heterodimerization activity, protein homodimerization activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POMFBO.I.C.G.H.G.
13.999.412.7At5g64700836591nodulin MtN21 family proteinF:molecular_function unknown;P:unknown;C:membrane;OBPAMFO.I.C.G.H.G.
13.899.497.9At1g12200837773flavin-containing monooxygenase family protein / FMO family proteinF:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
13.899.432.1At1g30760839958FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
13.899.425.9At4g13195826934CLE44 (CLAVATA3/ESR-RELATED 44)Belongs to a large gene family, called CLE for CLAVATA3/ESR-related, encoding small peptides with conserved carboxyl termini. The C-terminal 12 amino acid sequence of CLE44 is identical to that of a dodeca peptide (TDIF, tracheary element differentiation inhibitory factor) isolated from Arabidopsis and functions as a suppressor of plant stem cell differentiation. TDIF sequence is also identical to the C-terminal 12 amino acids of CLE41 (At3g24770).O.I.C.G.H.G.
13.899.415.6At3g04510819607LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMO.I.C.G.H.G.
13.799.410.5At5g25860832655F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:vacuole;PO.I.C.G.H.G.
13.699.4178.7At2g38800818462calmodulin-binding protein-relatedF:calmodulin binding;P:unknown;C:cellular_component unknown;BOMFPVAO.I.C.G.H.G.
13.599.429.7At1g72140843545proton-dependent oligopeptide transport (POT) family proteinF:transporter activity;P:oligopeptide transport, response to nematode;C:plasma membrane, membrane;BPMOFO.I.C.G.H.G.
13.599.420.9At1g14480838010protein bindingF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOPBFVAO.I.C.G.H.G.
13.499.421.2At4g39720830127VQ motif-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFO.I.C.G.H.G.
13.199.450.9At5g37690833748GDSL-motif lipase/hydrolase family proteinF:lipase activity, hydrolase activity, acting on ester bonds;P:lipid metabolic process;C:endomembrane system;PBFOMO.I.C.G.H.G.



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