Microarray experiments to specifically-expressed genes

GSM ID GSM133705
Assay name Short_1-1_ozone_Rep1_ATH1
GSE experiment GSE5722: Functional Genomics of Ozone Stress in Arabidopsis.

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
110.899.9261.8At3g49620824124DIN11 (DARK INDUCIBLE 11)encodes a protein similar to 2-oxoacid-dependent dioxygenase. Expression is induced after 24 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.O.I.C.G.H.G.
71.699.9137.6At2g35980818171YLS9 (YELLOW-LEAF-SPECIFIC GENE 9)Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and during senescence. The gene product is localized to the chloroplast.O.I.C.G.H.G.
54.699.893.5At2g30750817626CYP71A12 (cytochrome P450, family 71, subfamily A, polypeptide 12)putative cytochrome P450O.I.C.G.H.G.
51.999.8162.4At1g56060842057unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO.I.C.G.H.G.
45.199.821.0At3g55790824745unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MPBOFVO.I.C.G.H.G.
43.799.897.8At1g35230840412AGP5 (ARABINOGALACTAN-PROTEIN 5)Encodes arabinogalactan-protein (AGP5).O.I.C.G.H.G.
40.899.8101.4At2g29460817495ATGSTU4 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 4)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
40.099.814.8At5g66890836823disease resistance protein (CC-NBS-LRR class), putativeF:unknown;P:defense response;C:unknown;PMBOFAVO.I.C.G.H.G.
33.499.7184.2At3g26830822298PAD3 (PHYTOALEXIN DEFICIENT 3)Mutations in pad3 are defective in biosynthesis of the indole derived phytoalexin camalexin. Encodes a cytochrome P450 enzyme that catalyzes the conversion of dihydrocamalexic acid to camalexin.O.I.C.G.H.G.
31.099.711.7At1g66570842975ATSUC7 (Sucrose-proton symporter 7)F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity, sucrose:hydrogen symporter activity;P:transport, sucrose transport;C:integral to membrane, integral to plasma membrane, membrane;BMOPFAO.I.C.G.H.G.
30.099.776.3At3g28930822529AIG2 (AVRRPT2-INDUCED GENE 2)avrRpt2-induced gene that exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
29.199.764.3At1g66090842923disease resistance protein (TIR-NBS class), putativeF:transmembrane receptor activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:signal transduction, defense response, apoptosis, innate immune response;C:intrinsic to membrane, chloroplast;PBOMFO.I.C.G.H.G.
26.499.7104.2At1g15520838122PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)ABC transporter family involved in resistant to lead. Localizes to plasma membrane. Upregulated by lead. Expressed in leaves, flowers. Not expressed in roots.O.I.C.G.H.G.
24.599.628.6At2g43000818902anac042 (Arabidopsis NAC domain containing protein 42)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
24.199.6126.8At1g51760841602IAR3 (IAA-ALANINE RESISTANT 3)encodes a member of the six Arabidopsis IAA-amino acid conjugate hydrolase subfamily and conjugates and conjugates IAA-Ala in vitro. Gene is expressed most strongly in roots, stems, and flowers.O.I.C.G.H.G.
22.899.6112.2At1g47400841144unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
21.299.6121.7At3g51660824329macrophage migration inhibitory factor family protein / MIF family proteinF:molecular_function unknown;P:inflammatory response, response to other organism;C:peroxisome;MPOBO.I.C.G.H.G.
20.599.655.0At5g57150835821basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMVOO.I.C.G.H.G.
19.399.6204.7At3g54640824629TSA1 (TRYPTOPHAN SYNTHASE ALPHA CHAIN)Catalyzes the conversion of indole-3-glycerolphosphate to indole, the penultimate reaction in the biosynthesis of tryptophan. Functions as a heterocomplex with tryptophan synthase beta subunit (TSA2).O.I.C.G.H.G.
18.499.516.2At4g22980828397-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PMFOBAO.I.C.G.H.G.
18.399.579.7At3g28210822447PMZEncodes a putative zinc finger protein (PMZ).O.I.C.G.H.G.
17.999.5157.4At3g44860823620FAMT (farnesoic acid carboxyl-O-methyltransferase)Encodes a farnesoic acid carboxyl-O-methyltransferase.O.I.C.G.H.G.
17.799.5205.3At2g18690816384unknown proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;PBO.I.C.G.H.G.
17.299.557.2At1g01560839523ATMPK11member of MAP KinaseO.I.C.G.H.G.
16.699.540.3At1g764708439803-beta-hydroxy-delta5-steroid dehydrogenase/ binding / catalytic/ cinnamoyl-CoA reductaseF:3-beta-hydroxy-delta5-steroid dehydrogenase activity, binding, cinnamoyl-CoA reductase activity, catalytic activity;P:lignin biosynthetic process, steroid biosynthetic process, metabolic process;C:endomembrane system;OBPFMAVO.I.C.G.H.G.
16.299.524.5At1g33030840198O-methyltransferase family 2 proteinF:O-methyltransferase activity;P:lignin biosynthetic process;C:cytosol;PBFOMO.I.C.G.H.G.
16.099.5155.7At2g39030818489GCN5-related N-acetyltransferase (GNAT) family proteinF:N-acetyltransferase activity;P:metabolic process;C:cellular_component unknown;BOMFPAO.I.C.G.H.G.
15.699.5106.5At5g03610831778GDSL-motif lipase/hydrolase family proteinF:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFMO.I.C.G.H.G.
15.299.435.5At3g04000819555short-chain dehydrogenase/reductase (SDR) family proteinF:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:unknown;BOMFPAVO.I.C.G.H.G.
15.199.454.4At4g24350828538phosphorylase family proteinF:catalytic activity, nutrient reservoir activity;P:response to wounding;C:plant-type cell wall;BPOAFO.I.C.G.H.G.
14.999.4198.0At2g06050815160OPR3 (OPDA-REDUCTASE 3)Encodes a 12-oxophytodienoate reductase that is required for jasmonate biosynthesis. Mutants are male sterile and defective in pollen dehiscence.O.I.C.G.H.G.
14.799.432.8At1g28190839713unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBO.I.C.G.H.G.
14.599.421.5At4g12120826820SEC1Bmember of KEULE Gene FamilyO.I.C.G.H.G.
14.399.412.1At1g22900838897-F:molecular_function unknown;P:defense response;C:endomembrane system;PO.I.C.G.H.G.
14.299.450.3At1g66760842994MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:response to wounding;C:membrane;BOPFMAO.I.C.G.H.G.
14.199.432.1At1g26390839181FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAMO.I.C.G.H.G.
13.899.4291.4At3g16530820901legume lectin family proteinLectin like protein whose expression is induced upon treatment with chitin oligomers.O.I.C.G.H.G.
13.699.491.7At3g25780822169AOC3 (ALLENE OXIDE CYCLASE 3)Encodes allene oxide cyclase, one of the enzymes involved in jasmonic acid biosynthesis. One of four genes in Arabidopsis that encode this enzyme. mRNA expression is upregulated in senescing leaves. Note: Nomenclature for Arabidopsis allene oxide cyclase 3 (AOC3, AT3G25780) gene is based on Stenzel et al. 2003 Plant Molecular Biology 51:895-911. AOC3 (AT3G25780) is also referred to as AOC2 in He et al. 2002 Plant Physiology, 128:876-884.O.I.C.G.H.G.
13.499.429.0At1g22180838823SEC14 cytosolic factor family protein / phosphoglyceride transfer family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
12.799.3110.9At1g24807839085anthranilate synthase beta subunit, putativeF:catalytic activity, anthranilate synthase activity;P:glutamine metabolic process, biosynthetic process, metabolic process;C:chloroplast;BOFAMPO.I.C.G.H.G.
12.699.333.3At2g46510819262ATAIB (ABA-INDUCIBLE BHLH-TYPE TRANSCRIPTION FACTOR)Encodes a nuclear localized BLH domain containing transcriptional activator involved in response to ABA. Overexpression confers enhanced ABA responsiveness while loss of function mutants are ABA sensitive.O.I.C.G.H.G.
12.599.3126.9At5g53450835426ORG1 (OBP3-responsive gene 1)F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBO.I.C.G.H.G.
12.199.3188.0At2g24850817022TAT3 (TYROSINE AMINOTRANSFERASE 3)Encodes a tyrosine aminotransferase that is responsive to treatment with jasmonic acid.O.I.C.G.H.G.
12.099.3125.5At5g27380832797GSH2 (GLUTATHIONE SYNTHETASE 2)Encodes a protein with similarity to glutathione synthetases, which catalyzes one of the early steps in glutathione biosynthesis. Two transcripts have been detected; the longer transcript is less abundant and the protein is localized to the chloroplast. The smaller transcript, in which the transit peptide is truncated, is localized to the cytosol.O.I.C.G.H.G.
12.099.3100.7At1g22890838896unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
11.999.350.1At4g17720827493RNA recognition motif (RRM)-containing proteinF:oxidoreductase activity, nucleotide binding, nucleic acid binding;P:oxidation reduction;C:unknown;POFMBVAO.I.C.G.H.G.
11.899.3106.8At2g33110817873ATVAMP723 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 723)member of VAMP72 Gene FamilyO.I.C.G.H.G.
11.899.39.6At5g65600836686legume lectin family protein / protein kinase family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
11.799.3188.2At1g19020838483unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:cellular_component unknown;PO.I.C.G.H.G.
11.799.325.5At1g71140843454MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMAO.I.C.G.H.G.
11.799.319.7At4g11370826739RHA1AEncodes a putative RING-H2 finger protein RHA1a.O.I.C.G.H.G.
11.699.3246.0At4g27070828815TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)Tryptophan synthase beta. Expressed at low levels in all tissues.O.I.C.G.H.G.
11.699.382.3At2g46400819248WRKY46member of WRKY Transcription Factor; Group IIIO.I.C.G.H.G.
11.499.3104.3At3g04640819622glycine-rich proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;BMPOFVAO.I.C.G.H.G.
11.399.343.4At1g76640843997calmodulin-related protein, putativeF:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;MPFOBVO.I.C.G.H.G.
11.099.241.4At1g61120842405TPS04 (TERPENE SYNTHASE 04)Encodes a geranyllinalool synthase that produces a precursor to TMTT, a volatile plant defense C16-homoterpene. GES transcript levels rise in response to alamethicin, a fungal peptide mixture that damages membranes. This transcriptional response is blocked in JA biosynthetic and JA signaling mutants, but GES transcript levels still rise in response to alamethicin in mutants with salicylic acid and ethylene biosynthetic and/or signaling defects. GES transcripts also accumulate in response to a larval infestation. This enzyme does not localize to the plastids, and it may be present in the cytosol or endoplasmic reticulum.O.I.C.G.H.G.
10.999.2285.1At5g06320830520NHL3encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression of this gene is induced by cucumber mosaic virus, spermine and Pseudomonas syringae pv. tomato DC3000. The gene product is localized to the plasma membrane.O.I.C.G.H.G.
10.999.2117.2At4g04610825793APR1 (APS REDUCTASE 1)Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. This protein also belongs to the adenosine 5'-phosphosulfate reductase-like (APRL) group.O.I.C.G.H.G.
10.899.284.8At5g18470831965curculin-like (mannose-binding) lectin family proteinF:sugar binding;P:biological_process unknown;C:plant-type cell wall;PO.I.C.G.H.G.
10.599.288.6At3g23550821934MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFAMO.I.C.G.H.G.
10.599.249.8At5g52810835358ornithine cyclodeaminase/mu-crystallin family proteinF:structural constituent of eye lens, binding, catalytic activity;P:arginine catabolic process to glutamate, nopaline catabolic process, metabolic process, octopine catabolic process;C:chloroplast;BOMAFPO.I.C.G.H.G.
10.499.257.1At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
10.499.248.6At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
10.499.224.6At1g23550838965SRO2 (SIMILAR TO RCD ONE 2)Encodes a protein with similarity to RCD1 but without the WWE domain. The protein does have a PARP signature upstream of the C-terminal protein interaction domain. The PARP signature may bind NAD+ and attach the ADP-ribose-moiety from NAD+ to the target molecule. Its presence suggests a role for the protein in ADP ribosylation.O.I.C.G.H.G.
10.399.2268.1At3g22600821832protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;POMO.I.C.G.H.G.
10.399.2135.5At2g17120816217LYM2 (LYSM DOMAIN GPI-ANCHORED PROTEIN 2 PRECURSOR)F:molecular_function unknown;P:cell wall macromolecule catabolic process;C:anchored to plasma membrane, plasma membrane, anchored to membrane;PBOO.I.C.G.H.G.
10.399.213.5At4g31970829327CYP82C2member of CYP82CO.I.C.G.H.G.
10.299.262.3At3g19260821460LOH2 (LAG ONE HOMOLOGUE 2)LAG1 homolog . Loss of function mutant is sensitive to AAL-toxin. LOH2 is presumed to function in sphingolipid metabolism.O.I.C.G.H.G.
10.299.245.1At3g47480823902calcium-binding EF hand family proteinF:calcium ion binding;P:biological_process unknown;C:endomembrane system;MPFOBO.I.C.G.H.G.
10.299.233.9At1g33960840293AIG1 (AVRRPT2-INDUCED GENE 1)Identified as a gene that is induced by avirulence gene avrRpt2 and RPS2 after infection with Pseudomonas syringae pv maculicola strain ES4326 carrying avrRpt2O.I.C.G.H.G.
10.199.2151.9At1g76790844013O-methyltransferase family 2 proteinF:methyltransferase activity, O-methyltransferase activity, protein dimerization activity;P:unknown;C:cytosol;PBFOMO.I.C.G.H.G.
10.199.215.7At1g72280843560AERO1 (Arabidopsis endoplasmic reticulum oxidoreductins 1)endoplasmic reticulum oxidoreductinO.I.C.G.H.G.
10.199.211.9At2g30400817591OFP2 (OVATE FAMILY PROTEIN 2)F:unknown;P:N-terminal protein myristoylation;C:unknown;POMFBO.I.C.G.H.G.
9.999.128.3At1g60730842367aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPAO.I.C.G.H.G.
9.899.189.6At3g09350820091armadillo/beta-catenin repeat family proteinF:binding;P:biological_process unknown;C:cellular_component unknown;MFPOO.I.C.G.H.G.
9.899.188.5At5g25940832663early nodulin-relatedF:molecular_function unknown;P:unknown;C:mitochondrion;PO.I.C.G.H.G.
9.899.133.6At1g63720842676-F:unknown;P:unknown;C:unknown;MPFOVBO.I.C.G.H.G.
9.799.1113.7At1g63840842687zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:response to abscisic acid stimulus;C:endomembrane system;PMOFVO.I.C.G.H.G.
9.799.179.6At5g13750831220ZIFL1 (ZINC INDUCED FACILITATOR-like 1)F:tetracycline:hydrogen antiporter activity;P:response to antibiotic, tetracycline transport;C:integral to membrane;BFOMAPO.I.C.G.H.G.
9.799.111.7At5g04150830293BHLH101F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOVBFO.I.C.G.H.G.
9.699.1168.4At1g74100843750SOT16 (SULFOTRANSFERASE 16)encodes a desulfoglucosinolate sulfotransferase, involved in the final step of glucosinolate core structure biosynthesis. Has a broad-substrate specificity with different desulfoglucosinolates, the best substrate is indole-3-methyl-dsGS, followed by benzyl-dsGS. Expression was induced by wounding, jasmonate and ethylene stimulates.O.I.C.G.H.G.
9.699.185.0At1g22400838846UGT85A1F:in 6 functions;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
9.699.118.3At2g40340818627AP2 domain-containing transcription factor, putative (DRE2B)encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.O.I.C.G.H.G.
9.599.137.7At5g47730834824SEC14 cytosolic factor, putative / polyphosphoinositide-binding protein, putativeF:transporter activity, binding;P:transport;C:cellular_component unknown;MPFOO.I.C.G.H.G.
9.499.153.8At1g74710843810isochorismate synthase 1 (ICS1) / isochorismate mutaseEncodes a protein with isochorismate synthase activity. Mutants fail to accumulate salicylic acid. Its function may be redundant with that of ICS2 (AT1G18870).O.I.C.G.H.G.
9.499.146.8At1g13340837894unknown proteinF:unknown;P:response to oxidative stress;C:unknown;MPFOO.I.C.G.H.G.
9.399.145.6At1g02270839381endonuclease/exonuclease/phosphatase family protein / calcium-binding EF hand family proteinF:catalytic activity, calcium ion binding;P:response to cold;C:nucleus;MPOFO.I.C.G.H.G.
9.299.1218.6At5g13190831158-F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO.I.C.G.H.G.
9.299.165.2At1g57630842139disease resistance protein (TIR class), putativeF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PO.I.C.G.H.G.
9.299.127.6At3g06890819874unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.299.112.1At5g12930831133unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABFO.I.C.G.H.G.
9.199.157.0At1g26380839180FAD-binding domain-containing proteinF:electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;BFPOAMO.I.C.G.H.G.
9.199.19.9At5g59510836070RTFL5 (ROTUNDIFOLIA LIKE 5)F:molecular_function unknown;P:shoot development;C:cellular_component unknown;PMFOBO.I.C.G.H.G.
8.999.0227.3At5g54500835538FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1)Encodes a flavin mononucleotide-binding flavodoxin-like quinone reductase that is a primary auxin-response gene.O.I.C.G.H.G.
8.999.019.4At3g44480823573RPP1 (recognition of peronospora parasitica 1)Encodes a TIR-NB-LRR R-protein RPP1 that confers resistance to Peronospora parasitica (downy mildew).O.I.C.G.H.G.
8.899.0117.9At5g05600830443oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, iron ion binding;P:response to salt stress;C:unknown;POBFMO.I.C.G.H.G.



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