CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133317

Assay name RIKEN-LI4A

GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
153.9 99.9 217.7 At1g15550 838125 GA3OX1 (GIBBERELLIN 3-OXIDASE 1) Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback). O.I. C.G. H.G.
116.5 99.9 105.7 At3g05190 819683 aminotransferase class IV family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM O.I. C.G. H.G.
108.4 99.9 100.3 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
105.5 99.9 27.7 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
95.4 99.9 156.8 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
92.6 99.9 220.2 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
91.9 99.9 67.9 At3g24650 822061 ABI3 (ABA INSENSITIVE 3) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
87.0 99.9 28.2 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
81.6 99.9 50.4 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF O.I. C.G. H.G.
79.5 99.9 28.2 At2g24560 816992 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
79.4 99.9 33.2 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). O.I. C.G. H.G.
78.5 99.9 36.3 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
77.0 99.9 249.9 At5g56260 835725 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
74.1 99.9 293.5 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
73.2 99.9 55.4 At3g60290 825200 oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
71.0 99.9 258.8 At5g66780 836811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
69.6 99.9 76.2 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
67.9 99.9 30.8 At4g27250 828833 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
64.8 99.8 180.3 At2g41280 818727 M10 Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance. O.I. C.G. H.G.
62.9 99.8 291.0 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
61.7 99.8 61.7 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
60.3 99.8 48.2 At3g15357 820774 unknown protein F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA O.I. C.G. H.G.
59.9 99.8 148.7 At2g41260 818725 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. O.I. C.G. H.G.
54.8 99.8 176.5 At2g15010 815990 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
54.5 99.8 56.2 At2g43500 818951 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
54.0 99.8 160.9 At5g39850 833981 40S ribosomal protein S9 (RPS9C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA O.I. C.G. H.G.
54.0 99.8 44.7 At1g68240 843153 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
52.0 99.8 257.1 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
49.7 99.8 51.2 At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. O.I. C.G. H.G.
49.5 99.8 132.6 At5g25900 832659 GA3 (GA REQUIRING 3) Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. O.I. C.G. H.G.
48.9 99.8 28.4 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. O.I. C.G. H.G.
47.5 99.8 99.8 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. O.I. C.G. H.G.
46.6 99.8 222.0 At3g54940 824659 - - O.I. C.G. H.G.
46.3 99.8 59.3 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
46.3 99.8 15.9 At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
46.1 99.8 30.2 At4g37580 829913 HLS1 (HOOKLESS 1) involved in apical hook development. putative N-acetyltransferase O.I. C.G. H.G.
46.0 99.8 57.3 At1g16730 838244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
46.0 99.8 48.4 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
45.8 99.8 44.1 At4g19240 827664 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
44.9 99.8 270.6 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. O.I. C.G. H.G.
44.5 99.8 93.5 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). O.I. C.G. H.G.
44.0 99.8 169.9 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
43.3 99.8 119.0 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
42.7 99.8 32.3 At2g45150 819123 phosphatidate cytidylyltransferase family protein F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP O.I. C.G. H.G.
42.3 99.8 70.8 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
42.3 99.8 57.0 At1g77480 844084 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;POFM O.I. C.G. H.G.
42.2 99.8 46.0 At2g20180 816538 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. O.I. C.G. H.G.
42.2 99.8 44.8 At5g45920 834632 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
41.4 99.8 251.4 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.
41.3 99.8 174.0 At5g66920 836826 sks17 (SKU5 Similar 17) F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA O.I. C.G. H.G.
39.9 99.8 56.2 At5g24130 832478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM O.I. C.G. H.G.
39.0 99.8 100.9 At1g65090 842817 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
38.6 99.8 202.5 At1g26770 839218 ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
37.7 99.7 44.2 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
37.6 99.7 82.9 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF O.I. C.G. H.G.
37.5 99.7 292.2 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
37.4 99.7 222.2 At1g15500 838120 ATNTT2 F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFM O.I. C.G. H.G.
36.5 99.7 247.9 At1g61800 842477 GPT2 glucose6-Phosphate/phosphate transporter 2 O.I. C.G. H.G.
36.4 99.7 27.3 At2g03590 814888 ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1) Encodes a member of a class of allantoin transporters. O.I. C.G. H.G.
36.3 99.7 256.2 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
35.8 99.7 79.4 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
35.5 99.7 81.6 At4g36910 829844 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) Has a cystathionine Beta-synthase domain. O.I. C.G. H.G.
34.8 99.7 76.1 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
34.5 99.7 43.3 At2g42280 818829 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
33.8 99.7 155.4 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. O.I. C.G. H.G.
32.4 99.7 272.7 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. O.I. C.G. H.G.
32.1 99.7 261.8 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
32.1 99.7 106.1 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
31.9 99.7 33.3 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF O.I. C.G. H.G.
31.3 99.7 215.3 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. O.I. C.G. H.G.
30.9 99.7 103.6 At5g46180 834660 delta-OAT ornithine delta-aminotransferase O.I. C.G. H.G.
30.9 99.7 45.2 At3g12860 820468 nucleolar protein Nop56, putative F:unknown;P:biological_process unknown;C:unknown;MOFPBAV O.I. C.G. H.G.
30.8 99.7 86.5 At1g67100 843030 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) F:unknown;P:response to gibberellin stimulus;C:unknown;P O.I. C.G. H.G.
30.6 99.7 104.1 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF O.I. C.G. H.G.
29.9 99.7 89.3 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
29.7 99.7 110.4 At5g38530 833841 tryptophan synthase-related F:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPM O.I. C.G. H.G.
29.6 99.7 58.4 At3g03450 821251 RGL2 (RGA-LIKE 2) Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. O.I. C.G. H.G.
29.4 99.7 257.9 At3g15670 820810 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA O.I. C.G. H.G.
29.4 99.7 172.7 At3g27020 822319 YSL6 (YELLOW STRIPE LIKE 6) Arabidopsis thaliana metal-nicotianamine transporter YSL6 O.I. C.G. H.G.
29.4 99.7 40.1 At5g10510 830915 AIL6 (AINTEGUMENTA-LIKE 6) Encodes an AP2-domain transcription factor involved in root stem cell identity and root development. O.I. C.G. H.G.
29.3 99.7 197.5 At1g32560 840150 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO O.I. C.G. H.G.
29.2 99.7 81.8 At1g80640 844403 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
28.5 99.7 18.3 At5g45780 834618 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
27.8 99.7 161.1 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
27.8 99.7 94.3 At3g19920 821530 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
27.5 99.7 22.9 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
27.4 99.7 197.2 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
27.2 99.7 24.1 At5g04000 830279 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.2 99.7 19.2 At1g55200 841963 protein kinase family protein F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA O.I. C.G. H.G.
27.1 99.7 312.9 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO O.I. C.G. H.G.
26.7 99.7 74.3 At2g29140 817463 APUM3 (Arabidopsis Pumilio 3) F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPB O.I. C.G. H.G.
26.5 99.7 53.2 At2g22840 816815 AtGRF1 (GROWTH-REGULATING FACTOR 1) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower O.I. C.G. H.G.
25.9 99.7 23.8 At5g14580 831309 polyribonucleotide nucleotidyltransferase, putative F:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAF O.I. C.G. H.G.
25.8 99.7 262.8 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
25.8 99.7 75.9 At1g76300 843963 SmD3 (snRNP core protein SmD3) F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOP O.I. C.G. H.G.
25.4 99.6 29.3 At4g24670 828569 TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2) Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. O.I. C.G. H.G.
25.3 99.6 89.4 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV O.I. C.G. H.G.
25.2 99.6 15.0 At5g39840 833980 ATP-dependent RNA helicase, mitochondrial, putative F:helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:mitochondrion;OBFMPAV O.I. C.G. H.G.
24.9 99.6 277.0 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
24.9 99.6 91.4 At2g15000 815989 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
153.9	99.9	217.7	At1g15550	838125	GA3OX1 (GIBBERELLIN 3-OXIDASE 1)	Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).	O.I.	C.G.	H.G.
116.5	99.9	105.7	At3g05190	819683	aminotransferase class IV family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM	O.I.	C.G.	H.G.
108.4	99.9	100.3	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
105.5	99.9	27.7	At1g72570	843589	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
95.4	99.9	156.8	At1g33790	840271	jacalin lectin family protein	F:unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
92.6	99.9	220.2	At4g16210	827314	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
91.9	99.9	67.9	At3g24650	822061	ABI3 (ABA INSENSITIVE 3)	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
87.0	99.9	28.2	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
81.6	99.9	50.4	At1g48660	841288	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF	O.I.	C.G.	H.G.
79.5	99.9	28.2	At2g24560	816992	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
79.4	99.9	33.2	At4g11140	826715	CRF1 (CYTOKININ RESPONSE FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).	O.I.	C.G.	H.G.
78.5	99.9	36.3	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
77.0	99.9	249.9	At5g56260	835725	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
74.1	99.9	293.5	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
73.2	99.9	55.4	At3g60290	825200	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
71.0	99.9	258.8	At5g66780	836811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
69.6	99.9	76.2	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
67.9	99.9	30.8	At4g27250	828833	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
64.8	99.8	180.3	At2g41280	818727	M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.	O.I.	C.G.	H.G.
62.9	99.8	291.0	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
61.7	99.8	61.7	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
60.3	99.8	48.2	At3g15357	820774	unknown protein	F:unknown;P:biological_process unknown;C:chloroplast;OMBFPVA	O.I.	C.G.	H.G.
59.9	99.8	148.7	At2g41260	818725	M17	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	O.I.	C.G.	H.G.
54.8	99.8	176.5	At2g15010	815990	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
54.5	99.8	56.2	At2g43500	818951	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
54.0	99.8	160.9	At5g39850	833981	40S ribosomal protein S9 (RPS9C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA	O.I.	C.G.	H.G.
54.0	99.8	44.7	At1g68240	843153	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
52.0	99.8	257.1	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
49.7	99.8	51.2	At2g36270	818199	ABI5 (ABA INSENSITIVE 5)	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.	O.I.	C.G.	H.G.
49.5	99.8	132.6	At5g25900	832659	GA3 (GA REQUIRING 3)	Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.	O.I.	C.G.	H.G.
48.9	99.8	28.4	At2g40220	818614	ABI4 (ABA INSENSITIVE 4)	encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	O.I.	C.G.	H.G.
47.5	99.8	99.8	At5g14570	831308	ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)	Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.	O.I.	C.G.	H.G.
46.6	99.8	222.0	At3g54940	824659	-	-	O.I.	C.G.	H.G.
46.3	99.8	59.3	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
46.3	99.8	15.9	At5g65510	836677	AIL7 (AINTEGUMENTA-like 7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
46.1	99.8	30.2	At4g37580	829913	HLS1 (HOOKLESS 1)	involved in apical hook development. putative N-acetyltransferase	O.I.	C.G.	H.G.
46.0	99.8	57.3	At1g16730	838244	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
46.0	99.8	48.4	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
45.8	99.8	44.1	At4g19240	827664	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
44.9	99.8	270.6	At2g22780	816808	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)	encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	O.I.	C.G.	H.G.
44.5	99.8	93.5	At1g03790	839408	SOM (SOMNUS)	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	O.I.	C.G.	H.G.
44.0	99.8	169.9	At1g29980	839877	-	F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
43.3	99.8	119.0	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
42.7	99.8	32.3	At2g45150	819123	phosphatidate cytidylyltransferase family protein	F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP	O.I.	C.G.	H.G.
42.3	99.8	70.8	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
42.3	99.8	57.0	At1g77480	844084	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;POFM	O.I.	C.G.	H.G.
42.2	99.8	46.0	At2g20180	816538	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.	O.I.	C.G.	H.G.
42.2	99.8	44.8	At5g45920	834632	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
41.4	99.8	251.4	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.
41.3	99.8	174.0	At5g66920	836826	sks17 (SKU5 Similar 17)	F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA	O.I.	C.G.	H.G.
39.9	99.8	56.2	At5g24130	832478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
39.0	99.8	100.9	At1g65090	842817	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
38.6	99.8	202.5	At1g26770	839218	ATEXPA10 (ARABIDOPSIS THALIANA EXPANSIN A 10)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
37.7	99.7	44.2	At4g27730	828887	OPT6 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
37.6	99.7	82.9	At5g13360	831177	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF	O.I.	C.G.	H.G.
37.5	99.7	292.2	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
37.4	99.7	222.2	At1g15500	838120	ATNTT2	F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFM	O.I.	C.G.	H.G.
36.5	99.7	247.9	At1g61800	842477	GPT2	glucose6-Phosphate/phosphate transporter 2	O.I.	C.G.	H.G.
36.4	99.7	27.3	At2g03590	814888	ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)	Encodes a member of a class of allantoin transporters.	O.I.	C.G.	H.G.
36.3	99.7	256.2	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
35.8	99.7	79.4	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
35.5	99.7	81.6	At4g36910	829844	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	Has a cystathionine Beta-synthase domain.	O.I.	C.G.	H.G.
34.8	99.7	76.1	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
34.5	99.7	43.3	At2g42280	818829	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
33.8	99.7	155.4	At1g62710	842569	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	O.I.	C.G.	H.G.
32.4	99.7	272.7	At3g06860	819870	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.	O.I.	C.G.	H.G.
32.1	99.7	261.8	At4g36880	829841	CP1 (CYSTEINE PROTEINASE1)	F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
32.1	99.7	106.1	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
31.9	99.7	33.3	At1g22600	838866	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF	O.I.	C.G.	H.G.
31.3	99.7	215.3	At1g48130	841231	ATPER1	encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.	O.I.	C.G.	H.G.
30.9	99.7	103.6	At5g46180	834660	delta-OAT	ornithine delta-aminotransferase	O.I.	C.G.	H.G.
30.9	99.7	45.2	At3g12860	820468	nucleolar protein Nop56, putative	F:unknown;P:biological_process unknown;C:unknown;MOFPBAV	O.I.	C.G.	H.G.
30.8	99.7	86.5	At1g67100	843030	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	F:unknown;P:response to gibberellin stimulus;C:unknown;P	O.I.	C.G.	H.G.
30.6	99.7	104.1	At3g11050	820276	ATFER2 (ferritin 2)	F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF	O.I.	C.G.	H.G.
29.9	99.7	89.3	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
29.7	99.7	110.4	At5g38530	833841	tryptophan synthase-related	F:pyridoxal phosphate binding, tryptophan synthase activity, catalytic activity;P:tryptophan biosynthetic process, metabolic process;C:unknown;BOAFPM	O.I.	C.G.	H.G.
29.6	99.7	58.4	At3g03450	821251	RGL2 (RGA-LIKE 2)	Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.	O.I.	C.G.	H.G.
29.4	99.7	257.9	At3g15670	820810	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA	O.I.	C.G.	H.G.
29.4	99.7	172.7	At3g27020	822319	YSL6 (YELLOW STRIPE LIKE 6)	Arabidopsis thaliana metal-nicotianamine transporter YSL6	O.I.	C.G.	H.G.
29.4	99.7	40.1	At5g10510	830915	AIL6 (AINTEGUMENTA-LIKE 6)	Encodes an AP2-domain transcription factor involved in root stem cell identity and root development.	O.I.	C.G.	H.G.
29.3	99.7	197.5	At1g32560	840150	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
29.2	99.7	81.8	At1g80640	844403	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
28.5	99.7	18.3	At5g45780	834618	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
27.8	99.7	161.1	At2g21490	816688	LEA (DEHYDRIN LEA)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
27.8	99.7	94.3	At3g19920	821530	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
27.5	99.7	22.9	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
27.4	99.7	197.2	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
27.2	99.7	24.1	At5g04000	830279	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.2	99.7	19.2	At1g55200	841963	protein kinase family protein	F:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:plasma membrane;MPOBFVA	O.I.	C.G.	H.G.
27.1	99.7	312.9	At5g54740	835563	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO	O.I.	C.G.	H.G.
26.7	99.7	74.3	At2g29140	817463	APUM3 (Arabidopsis Pumilio 3)	F:RNA binding, binding;P:unknown;C:plasma membrane;FOMPB	O.I.	C.G.	H.G.
26.5	99.7	53.2	At2g22840	816815	AtGRF1 (GROWTH-REGULATING FACTOR 1)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower	O.I.	C.G.	H.G.
25.9	99.7	23.8	At5g14580	831309	polyribonucleotide nucleotidyltransferase, putative	F:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAF	O.I.	C.G.	H.G.
25.8	99.7	262.8	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
25.8	99.7	75.9	At1g76300	843963	SmD3 (snRNP core protein SmD3)	F:molecular_function unknown;P:unknown;C:nuclear body, nucleolus, small nucleolar ribonucleoprotein complex, nucleus;MFOP	O.I.	C.G.	H.G.
25.4	99.6	29.3	At4g24670	828569	TAR2 (TRYPTOPHAN AMINOTRANSFERASE RELATED 2)	Encodes a protein with similarity to the TAA1 trytophan aminotransferase involved in IAA biosynthesis. Double mutant analyses suggest that this protein is involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling.	O.I.	C.G.	H.G.
25.3	99.6	89.4	At5g22470	832308	NAD+ ADP-ribosyltransferase	F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV	O.I.	C.G.	H.G.
25.2	99.6	15.0	At5g39840	833980	ATP-dependent RNA helicase, mitochondrial, putative	F:helicase activity, ATP-dependent RNA helicase activity, nucleic acid binding, ATP binding;P:biological_process unknown;C:mitochondrion;OBFMPAV	O.I.	C.G.	H.G.
24.9	99.6	277.0	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
24.9	99.6	91.4	At2g15000	815989	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.

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GSM ID	GSM133317
Assay name	RIKEN-LI4A
GSE experiment	GSE5701: AtGenExpress: Basic hormone treatment of seeds

Microarray experiments to specifically-expressed genes

GSM ID GSM133317 Assay name RIKEN-LI4A GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds

GSM ID GSM133317

Assay name RIKEN-LI4A

GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds