CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133315

Assay name RIKEN-LI3A

GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
177.9 100.0 234.1 At1g15550 838125 GA3OX1 (GIBBERELLIN 3-OXIDASE 1) Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback). O.I. C.G. H.G.
152.7 99.9 88.1 At5g51810 835256 GA20OX2 (GIBBERELLIN 20 OXIDASE 2) Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock. O.I. C.G. H.G.
146.5 99.9 118.5 At3g05190 819683 aminotransferase class IV family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM O.I. C.G. H.G.
141.0 99.9 404.7 At2g35300 818097 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P O.I. C.G. H.G.
139.2 99.9 71.7 At1g68240 843153 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;PM O.I. C.G. H.G.
138.1 99.9 83.2 At3g24650 822061 ABI3 (ABA INSENSITIVE 3) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
116.8 99.9 331.9 At5g66780 836811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
115.2 99.9 103.3 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
112.7 99.9 378.6 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
110.9 99.9 135.9 At5g07200 830611 YAP169 encodes a gibberellin 20-oxidase. O.I. C.G. H.G.
109.5 99.9 163.0 At1g67100 843030 LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40) F:unknown;P:response to gibberellin stimulus;C:unknown;P O.I. C.G. H.G.
108.7 99.9 248.6 At2g15010 815990 thionin, putative Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660. O.I. C.G. H.G.
94.8 99.9 136.4 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). O.I. C.G. H.G.
93.6 99.9 581.3 At5g54740 835563 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO O.I. C.G. H.G.
92.8 99.9 185.1 At2g41260 818725 M17 Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis. O.I. C.G. H.G.
91.6 99.9 80.9 At1g70840 843421 MLP31 (MLP-LIKE PROTEIN 31) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
77.0 99.9 74.2 At1g16730 838244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
75.3 99.9 481.6 At5g03860 831690 MLS (MALATE SYNTHASE) Encodes a protein with malate synthase activity. O.I. C.G. H.G.
68.7 99.9 46.3 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF O.I. C.G. H.G.
67.5 99.8 131.9 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
65.5 99.8 263.3 At3g54940 824659 - - O.I. C.G. H.G.
65.1 99.8 184.6 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
61.3 99.8 301.7 At1g48130 841231 ATPER1 encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought. O.I. C.G. H.G.
59.1 99.8 36.3 At4g25420 828645 GA20OX1 Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light. O.I. C.G. H.G.
55.3 99.8 516.3 At5g44120 834435 CRA1 (CRUCIFERINA) Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
54.3 99.8 52.2 At2g20180 816538 PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5) Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression. O.I. C.G. H.G.
53.5 99.8 163.8 At2g41280 818727 M10 Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance. O.I. C.G. H.G.
53.4 99.8 268.1 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
50.1 99.8 337.6 At3g22640 821835 PAP85 F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM O.I. C.G. H.G.
49.4 99.8 132.5 At5g25900 832659 GA3 (GA REQUIRING 3) Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway. O.I. C.G. H.G.
49.4 99.8 28.8 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
48.8 99.8 213.4 At2g21490 816688 LEA (DEHYDRIN LEA) F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV O.I. C.G. H.G.
47.0 99.8 522.9 At4g28520 828970 CRU3 (CRUCIFERIN 3) Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds. O.I. C.G. H.G.
46.8 99.8 194.8 At5g56260 835725 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
46.2 99.8 325.9 At3g06860 819870 MFP2 (MULTIFUNCTIONAL PROTEIN 2) Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes. O.I. C.G. H.G.
44.7 99.8 125.1 At2g39980 818586 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB O.I. C.G. H.G.
43.8 99.8 106.9 At1g65090 842817 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV O.I. C.G. H.G.
43.0 99.8 142.8 At3g56350 824802 superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV O.I. C.G. H.G.
42.2 99.8 17.5 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
42.1 99.8 24.2 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). O.I. C.G. H.G.
42.0 99.8 334.8 At5g42890 834300 SCP2 (STEROL CARRIER PROTEIN 2) F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB O.I. C.G. H.G.
40.5 99.8 50.0 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
40.4 99.8 47.1 At2g23240 816856 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;POMB O.I. C.G. H.G.
40.0 99.8 130.8 At3g51810 824344 EM1 (LATE EMBRYOGENESIS ABUNDANT 1) Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip. O.I. C.G. H.G.
40.0 99.8 56.3 At5g24130 832478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM O.I. C.G. H.G.
39.5 99.8 167.9 At1g62710 842569 BETA-VPE (BETA VACUOLAR PROCESSING ENZYME) Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins. O.I. C.G. H.G.
39.2 99.8 23.4 At4g27250 828833 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
38.9 99.8 47.4 At2g43500 818951 RWP-RK domain-containing protein F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF O.I. C.G. H.G.
38.3 99.8 110.7 At3g19920 821530 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB O.I. C.G. H.G.
35.9 99.7 47.2 At3g48580 824018 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA O.I. C.G. H.G.
35.8 99.7 161.8 At5g62490 836369 ATHVA22B Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible. O.I. C.G. H.G.
33.4 99.7 303.9 At4g25140 828617 OLEO1 (OLEOSIN 1) Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
33.2 99.7 104.1 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
32.7 99.7 131.2 At2g21820 816718 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
31.6 99.7 516.2 At3g21720 821726 ICL (ISOCITRATE LYASE) Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL). O.I. C.G. H.G.
31.1 99.7 225.0 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. O.I. C.G. H.G.
31.1 99.7 99.1 At5g22470 832308 NAD+ ADP-ribosyltransferase F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV O.I. C.G. H.G.
30.7 99.7 100.3 At4g21020 827849 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA O.I. C.G. H.G.
30.6 99.7 127.9 At5g20960 832221 AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1) Encodes aldehyde oxidase AA01. O.I. C.G. H.G.
30.4 99.7 262.2 At3g15670 820810 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA O.I. C.G. H.G.
30.4 99.7 32.6 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF O.I. C.G. H.G.
30.3 99.7 173.3 At1g54870 841926 binding / catalytic/ oxidoreductase F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV O.I. C.G. H.G.
30.2 99.7 200.3 At1g32560 840150 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO O.I. C.G. H.G.
30.2 99.7 59.9 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
29.8 99.7 73.8 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF O.I. C.G. H.G.
29.6 99.7 37.7 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
29.4 99.7 57.7 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV O.I. C.G. H.G.
29.4 99.7 47.5 At1g77480 844084 nucellin protein, putative F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;POFM O.I. C.G. H.G.
29.3 99.7 88.5 At5g07990 830693 TT7 (TRANSPARENT TESTA 7) Required for flavonoid 3' hydroxylase activity. O.I. C.G. H.G.
28.7 99.7 38.9 At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. O.I. C.G. H.G.
28.4 99.7 32.8 At1g23070 838915 unknown protein F:unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
27.9 99.7 199.7 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
27.9 99.7 38.0 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
27.8 99.7 72.2 At4g36910 829844 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) Has a cystathionine Beta-synthase domain. O.I. C.G. H.G.
27.4 99.7 266.5 At5g40420 834040 OLEO2 (OLEOSIN 2) Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds. O.I. C.G. H.G.
27.2 99.7 221.9 At2g27380 817282 ATEPR1 Encodes an extensin like gene involved in seed germination. O.I. C.G. H.G.
26.8 99.7 157.2 At5g06760 830565 late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV O.I. C.G. H.G.
26.8 99.7 45.2 At2g32440 817805 KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2) ent-kaurenoic acid hydroxylase (KAO2) O.I. C.G. H.G.
26.4 99.7 68.2 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
25.7 99.7 16.5 At1g04920 839382 ATSPS3F (sucrose phosphate synthase 3F) Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
25.1 99.6 24.8 At2g45150 819123 phosphatidate cytidylyltransferase family protein F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP O.I. C.G. H.G.
25.1 99.6 15.2 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
24.7 99.6 108.8 At5g39850 833981 40S ribosomal protein S9 (RPS9C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA O.I. C.G. H.G.
24.5 99.6 157.6 At3g27020 822319 YSL6 (YELLOW STRIPE LIKE 6) Arabidopsis thaliana metal-nicotianamine transporter YSL6 O.I. C.G. H.G.
24.5 99.6 74.8 At1g80640 844403 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
24.3 99.6 37.6 At2g38465 818428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
24.2 99.6 133.0 At5g66920 836826 sks17 (SKU5 Similar 17) F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA O.I. C.G. H.G.
24.1 99.6 178.5 At1g15500 838120 ATNTT2 F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFM O.I. C.G. H.G.
24.0 99.6 310.4 At5g66400 836772 RAB18 (RESPONSIVE TO ABA 18) Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells. O.I. C.G. H.G.
23.6 99.6 91.5 At3g11050 820276 ATFER2 (ferritin 2) F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF O.I. C.G. H.G.
23.5 99.6 46.4 At1g50420 841464 SCL3 Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay). O.I. C.G. H.G.
22.8 99.6 186.7 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.
22.3 99.6 64.4 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
22.2 99.6 43.0 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
22.1 99.6 105.0 At5g56100 835709 glycine-rich protein / oleosin F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB O.I. C.G. H.G.
22.0 99.6 30.3 At3g60290 825200 oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
21.9 99.6 116.2 At4g16160 827308 mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco. O.I. C.G. H.G.
21.7 99.6 39.7 At1g15230 838090 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
21.4 99.6 189.0 At1g73190 843653 TIP3 Moves to the Protein Storage Vacuole in a Golgi independent manner O.I. C.G. H.G.
21.3 99.6 86.0 At5g46180 834660 delta-OAT ornithine delta-aminotransferase O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
177.9	100.0	234.1	At1g15550	838125	GA3OX1 (GIBBERELLIN 3-OXIDASE 1)	Involved in later steps of the gibberellic acid biosynthetic pathway. Activated by AGAMOUS in a cal-1, ap1-1 background. Deletion of 208 bp from -1016 to -809 (Δ-808) resulted in loss of GA-negative feedback (this sequence, which contains a 43-bp sequence GNFEI, was shown to be sufficient for GA-negative feedback).	O.I.	C.G.	H.G.
152.7	99.9	88.1	At5g51810	835256	GA20OX2 (GIBBERELLIN 20 OXIDASE 2)	Encodes gibberellin 20-oxidase. Involved in gibberellin biosynthesis. Up-regulated by far red light in elongating petioles. Not regulated by a circadian clock.	O.I.	C.G.	H.G.
146.5	99.9	118.5	At3g05190	819683	aminotransferase class IV family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM	O.I.	C.G.	H.G.
141.0	99.9	404.7	At2g35300	818097	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, pollen tube development;C:cellular_component unknown;P	O.I.	C.G.	H.G.
139.2	99.9	71.7	At1g68240	843153	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;PM	O.I.	C.G.	H.G.
138.1	99.9	83.2	At3g24650	822061	ABI3 (ABA INSENSITIVE 3)	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
116.8	99.9	331.9	At5g66780	836811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
115.2	99.9	103.3	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
112.7	99.9	378.6	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
110.9	99.9	135.9	At5g07200	830611	YAP169	encodes a gibberellin 20-oxidase.	O.I.	C.G.	H.G.
109.5	99.9	163.0	At1g67100	843030	LBD40 (LOB DOMAIN-CONTAINING PROTEIN 40)	F:unknown;P:response to gibberellin stimulus;C:unknown;P	O.I.	C.G.	H.G.
108.7	99.9	248.6	At2g15010	815990	thionin, putative	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant thionin (PR-13) family with the following members: At1g66100, At5g36910, At1g72260, At2g15010, At1g12663, At1g12660.	O.I.	C.G.	H.G.
94.8	99.9	136.4	At1g03790	839408	SOM (SOMNUS)	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	O.I.	C.G.	H.G.
93.6	99.9	581.3	At5g54740	835563	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding, nutrient reservoir activity;P:lipid transport, pollen development;C:endomembrane system;PO	O.I.	C.G.	H.G.
92.8	99.9	185.1	At2g41260	818725	M17	Late-embryogenesis-abundant gene. Involved in the acquisition of desiccation tolerance during late phase of embryogenesis.	O.I.	C.G.	H.G.
91.6	99.9	80.9	At1g70840	843421	MLP31 (MLP-LIKE PROTEIN 31)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
77.0	99.9	74.2	At1g16730	838244	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
75.3	99.9	481.6	At5g03860	831690	MLS (MALATE SYNTHASE)	Encodes a protein with malate synthase activity.	O.I.	C.G.	H.G.
68.7	99.9	46.3	At1g48660	841288	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF	O.I.	C.G.	H.G.
67.5	99.8	131.9	At1g33790	840271	jacalin lectin family protein	F:unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
65.5	99.8	263.3	At3g54940	824659	-	-	O.I.	C.G.	H.G.
65.1	99.8	184.6	At4g16210	827314	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
61.3	99.8	301.7	At1g48130	841231	ATPER1	encodes a protein similar to the 1-cysteine (1-Cys) peroxiredoxin family of antioxidants. Expression is limited to seed (aleurone and embryo) and is not induced by ABA or drought.	O.I.	C.G.	H.G.
59.1	99.8	36.3	At4g25420	828645	GA20OX1	Encodes gibberellin 20-oxidase that is involved in the later steps of the gibberellin biosynthetic pathway. Regulated by a circadian clock. Weak expression response to far red light.	O.I.	C.G.	H.G.
55.3	99.8	516.3	At5g44120	834435	CRA1 (CRUCIFERINA)	Encodes a 12S seed storage protein. The Landsberg erecta genome contains another copy of 12S globulin gene, CRA2, which is located tandemly with CRA1. Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
54.3	99.8	52.2	At2g20180	816538	PIL5 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 5)	Encodes a novel Myc-related bHLH transcription factor that has transcriptional activation activity in the dark. It is a key negative regulator of phytochrome-mediated seed germination and acts by inhibiting chlorophyll biosynthesis, light-mediated suppression of hypocotyl elongation and far-red light-mediated suppression of seed germination, and promoting negative gravitropism in hypocotyls. Light reduces this activity in a phy-dependent manner. The protein preferentially interacts with the Pfr forms of Phytochrome A (PhyA) and Phytochrome B (PhyB), is physically associated with APRR1/TOC1 and is degraded in red (R) and far-red (FR) light through the ubiquitin (ub)-26S proteasome pathway to optimize photomorphogenic development in Arabidopsis. It also negatively regulates GA3 oxidase expression.	O.I.	C.G.	H.G.
53.5	99.8	163.8	At2g41280	818727	M10	Encodes a hydrophilic protein similar to Late Embryogenesis Activated (LEA) proteins expressed during embryogenesis, which are thought to be involved in the acquisition of dessication tolerance.	O.I.	C.G.	H.G.
53.4	99.8	268.1	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
50.1	99.8	337.6	At3g22640	821835	PAP85	F:nutrient reservoir activity;P:biological_process unknown;C:plant-type cell wall;POM	O.I.	C.G.	H.G.
49.4	99.8	132.5	At5g25900	832659	GA3 (GA REQUIRING 3)	Encodes a member of the CYP701A cytochrome p450 family that is involved in later steps of the gibberellin biosynthetic pathway.	O.I.	C.G.	H.G.
49.4	99.8	28.8	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
48.8	99.8	213.4	At2g21490	816688	LEA (DEHYDRIN LEA)	F:molecular_function unknown;P:response to water, response to stress;C:cellular_component unknown;PMFOBV	O.I.	C.G.	H.G.
47.0	99.8	522.9	At4g28520	828970	CRU3 (CRUCIFERIN 3)	Encodes a 12S seed storage protein that is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.	O.I.	C.G.	H.G.
46.8	99.8	194.8	At5g56260	835725	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
46.2	99.8	325.9	At3g06860	819870	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	Encodes a multifunctional protein. Involved in peroxisomal fatty acid beta oxidation. Loss-of-function mutant lacks hydroxyacyl-CoA dehydrogenase activity and have reduced levels of long-chain enoyl-CoA hydratase activity. The mutant has fewer but larger peroxisomes.	O.I.	C.G.	H.G.
44.7	99.8	125.1	At2g39980	818586	transferase family protein	F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB	O.I.	C.G.	H.G.
43.8	99.8	106.9	At1g65090	842817	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPBV	O.I.	C.G.	H.G.
43.0	99.8	142.8	At3g56350	824802	superoxide dismutase (Mn), putative / manganese superoxide dismutase, putative	F:superoxide dismutase activity, metal ion binding;P:superoxide metabolic process, removal of superoxide radicals;C:mitochondrion, endomembrane system;BOFMPAV	O.I.	C.G.	H.G.
42.2	99.8	17.5	At1g72570	843589	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
42.1	99.8	24.2	At4g11140	826715	CRF1 (CYTOKININ RESPONSE FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).	O.I.	C.G.	H.G.
42.0	99.8	334.8	At5g42890	834300	SCP2 (STEROL CARRIER PROTEIN 2)	F:sterol carrier activity, oxidoreductase activity;P:glyoxylate metabolic process, intracellular lipid transport, fatty acid beta-oxidation, seed germination;C:peroxisome;MFOPB	O.I.	C.G.	H.G.
40.5	99.8	50.0	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
40.4	99.8	47.1	At2g23240	816856	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;POMB	O.I.	C.G.	H.G.
40.0	99.8	130.8	At3g51810	824344	EM1 (LATE EMBRYOGENESIS ABUNDANT 1)	Encodes a ABA-inducible protein that accumulates during seed maturation, in parallel with its corresponding mRNA but with a 3 d delay. During germination, AtEm1 protein undergoes two successive cleavages before being degraded. Both proteins are more stable than the corresponding mRNA. The gene can be activated by the basic leucine zipper transcription factor ABI5. Expressed predominantly in provascular tissues with the strongest expression in the root tip.	O.I.	C.G.	H.G.
40.0	99.8	56.3	At5g24130	832478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
39.5	99.8	167.9	At1g62710	842569	BETA-VPE (BETA VACUOLAR PROCESSING ENZYME)	Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteases that is expressed specifically in seeds and is essential for the proper processing of storage proteins.	O.I.	C.G.	H.G.
39.2	99.8	23.4	At4g27250	828833	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
38.9	99.8	47.4	At2g43500	818951	RWP-RK domain-containing protein	F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PBOMF	O.I.	C.G.	H.G.
38.3	99.8	110.7	At3g19920	821530	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB	O.I.	C.G.	H.G.
35.9	99.7	47.2	At3g48580	824018	xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative	F:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PBFOA	O.I.	C.G.	H.G.
35.8	99.7	161.8	At5g62490	836369	ATHVA22B	Part of the AtHVA22 family. Protein expression is ABA- and stress-inducible.	O.I.	C.G.	H.G.
33.4	99.7	303.9	At4g25140	828617	OLEO1 (OLEOSIN 1)	Encodes oleosin1, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
33.2	99.7	104.1	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
32.7	99.7	131.2	At2g21820	816718	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
31.6	99.7	516.2	At3g21720	821726	ICL (ISOCITRATE LYASE)	Encodes a glyoxylate cycle enzyme isocitrate lyase (ICL).	O.I.	C.G.	H.G.
31.1	99.7	225.0	At2g22780	816808	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)	encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	O.I.	C.G.	H.G.
31.1	99.7	99.1	At5g22470	832308	NAD+ ADP-ribosyltransferase	F:NAD+ ADP-ribosyltransferase activity;P:protein amino acid ADP-ribosylation;C:intracellular, nucleus;MOPFBV	O.I.	C.G.	H.G.
30.7	99.7	100.3	At4g21020	827849	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBPFVA	O.I.	C.G.	H.G.
30.6	99.7	127.9	At5g20960	832221	AAO1 (ARABIDOPSIS ALDEHYDE OXIDASE 1)	Encodes aldehyde oxidase AA01.	O.I.	C.G.	H.G.
30.4	99.7	262.2	At3g15670	820810	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:nucleus;BOMPFVA	O.I.	C.G.	H.G.
30.4	99.7	32.6	At1g22600	838866	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF	O.I.	C.G.	H.G.
30.3	99.7	173.3	At1g54870	841926	binding / catalytic/ oxidoreductase	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:chloroplast;BOMFPAV	O.I.	C.G.	H.G.
30.2	99.7	200.3	At1g32560	840150	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
30.2	99.7	59.9	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
29.8	99.7	73.8	At5g13360	831177	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF	O.I.	C.G.	H.G.
29.6	99.7	37.7	At5g42290	834234	transcription activator-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
29.4	99.7	57.7	At1g72100	843541	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV	O.I.	C.G.	H.G.
29.4	99.7	47.5	At1g77480	844084	nucellin protein, putative	F:aspartic-type endopeptidase activity;P:proteolysis;C:unknown;POFM	O.I.	C.G.	H.G.
29.3	99.7	88.5	At5g07990	830693	TT7 (TRANSPARENT TESTA 7)	Required for flavonoid 3' hydroxylase activity.	O.I.	C.G.	H.G.
28.7	99.7	38.9	At2g36270	818199	ABI5 (ABA INSENSITIVE 5)	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.	O.I.	C.G.	H.G.
28.4	99.7	32.8	At1g23070	838915	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
27.9	99.7	199.7	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
27.9	99.7	38.0	At4g27730	828887	OPT6 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
27.8	99.7	72.2	At4g36910	829844	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	Has a cystathionine Beta-synthase domain.	O.I.	C.G.	H.G.
27.4	99.7	266.5	At5g40420	834040	OLEO2 (OLEOSIN 2)	Encodes oleosin2, a protein found in oil bodies, involved in seed lipid accumulation. Suppression of OLEO1 (and OLEO2) resulted in an aberrant phenotype of embryo cells that contain unusually large oilbodies that are not normally observed in seeds. Changes in the size of oilbodies caused disruption of storage organelles, altering accumulation of lipids and proteins and causing delay in germination. Functions in freezing tolerance of seeds.	O.I.	C.G.	H.G.
27.2	99.7	221.9	At2g27380	817282	ATEPR1	Encodes an extensin like gene involved in seed germination.	O.I.	C.G.	H.G.
26.8	99.7	157.2	At5g06760	830565	late embryogenesis abundant group 1 domain-containing protein / LEA group 1 domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy, embryonic development;C:cellular_component unknown;PMBOFV	O.I.	C.G.	H.G.
26.8	99.7	45.2	At2g32440	817805	KAO2 (ENT-KAURENOIC ACID HYDROXYLASE 2)	ent-kaurenoic acid hydroxylase (KAO2)	O.I.	C.G.	H.G.
26.4	99.7	68.2	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
25.7	99.7	16.5	At1g04920	839382	ATSPS3F (sucrose phosphate synthase 3F)	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
25.1	99.6	24.8	At2g45150	819123	phosphatidate cytidylyltransferase family protein	F:phosphatidate cytidylyltransferase activity, transferase activity, transferring phosphorus-containing groups;P:phospholipid biosynthetic process;C:membrane;BOMFP	O.I.	C.G.	H.G.
25.1	99.6	15.2	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
24.7	99.6	108.8	At5g39850	833981	40S ribosomal protein S9 (RPS9C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA	O.I.	C.G.	H.G.
24.5	99.6	157.6	At3g27020	822319	YSL6 (YELLOW STRIPE LIKE 6)	Arabidopsis thaliana metal-nicotianamine transporter YSL6	O.I.	C.G.	H.G.
24.5	99.6	74.8	At1g80640	844403	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
24.3	99.6	37.6	At2g38465	818428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
24.2	99.6	133.0	At5g66920	836826	sks17 (SKU5 Similar 17)	F:oxidoreductase activity, copper ion binding;P:unknown;C:cell wall, plant-type cell wall;FBPMOA	O.I.	C.G.	H.G.
24.1	99.6	178.5	At1g15500	838120	ATNTT2	F:ATP:ADP antiporter activity;P:transport;C:mitochondrion, chloroplast, plastid, chloroplast envelope, cytoplasm;BOPFM	O.I.	C.G.	H.G.
24.0	99.6	310.4	At5g66400	836772	RAB18 (RESPONSIVE TO ABA 18)	Belongs to the dehydrin protein family, which contains highly conserved stretches of 7-17 residues that are repetitively scattered in their sequences, the K-, S-, Y- and lysine rich segments. ABA- and drought-induced glycine-rice dehydrin protein. The ABA-induced expression of RAB18 was reduced following ACC application, indicating that ethylene inhibits the ABA signaling pathway. RAB18 is also expressed in response to the formation of the phospholipid diacylglycerol pyrophosphate. COR47 and RAB18 double overexpressor plants are cold tolerant. Expressed in guard cells.	O.I.	C.G.	H.G.
23.6	99.6	91.5	At3g11050	820276	ATFER2 (ferritin 2)	F:oxidoreductase activity, ferric iron binding, binding, transition metal ion binding;P:response to oxidative stress, cellular iron ion homeostasis, response to abscisic acid stimulus, iron ion transport;C:chloroplast;MBPOAF	O.I.	C.G.	H.G.
23.5	99.6	46.4	At1g50420	841464	SCL3	Encodes a scarecrow-like protein (SCL3) Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).	O.I.	C.G.	H.G.
22.8	99.6	186.7	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.
22.3	99.6	64.4	At2g28420	817390	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
22.2	99.6	43.0	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
22.1	99.6	105.0	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	O.I.	C.G.	H.G.
22.0	99.6	30.3	At3g60290	825200	oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
21.9	99.6	116.2	At4g16160	827308	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	Homologous to pea OEP16 and barley pPORA (OEP16), a member of Arabidopsis OEP16 family. Two OEP16 genes are closely related to each other and are conserved in all land plants, OEP16-2, also named OEP16-S, and OEP16-1 (renamed OEP16-L) are result of the gene duplication event that occurred prior to divergence of bryophytes and seed plants. Predominantly expressed in seed and is not inducible by cold treatment. atOEP16-S gained an additional exon. The promoter region of atOEP16-S (but not atOEP16-L) contains multiple G-box ABA-responsive elements. The atOEP16-S promoter conferred developmentally regulated seed- and pollen-specific GUS expression in tobacco.	O.I.	C.G.	H.G.
21.7	99.6	39.7	At1g15230	838090	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
21.4	99.6	189.0	At1g73190	843653	TIP3	Moves to the Protein Storage Vacuole in a Golgi independent manner	O.I.	C.G.	H.G.
21.3	99.6	86.0	At5g46180	834660	delta-OAT	ornithine delta-aminotransferase	O.I.	C.G.	H.G.

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GSM ID	GSM133315
Assay name	RIKEN-LI3A
GSE experiment	GSE5701: AtGenExpress: Basic hormone treatment of seeds

Microarray experiments to specifically-expressed genes

GSM ID GSM133315 Assay name RIKEN-LI3A GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds

GSM ID GSM133315

Assay name RIKEN-LI3A

GSE experiment GSE5701: AtGenExpress: Basic hormone treatment of seeds