CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133305

Assay name RIKEN-NAKABAYASHI2A

GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
184.9 100.0 55.2 At2g40220 818614 ABI4 (ABA INSENSITIVE 4) encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings. O.I. C.G. H.G.
179.1 100.0 131.0 At3g05190 819683 aminotransferase class IV family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM O.I. C.G. H.G.
140.4 99.9 44.2 At4g27250 828833 dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV O.I. C.G. H.G.
138.1 99.9 107.4 At1g60090 842304 BGLU4 (BETA GLUCOSIDASE 4) F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA O.I. C.G. H.G.
108.4 99.9 167.1 At1g33790 840271 jacalin lectin family protein F:unknown;P:biological_process unknown;C:chloroplast;PO O.I. C.G. H.G.
106.1 99.9 80.9 At5g57390 835845 AIL5 (AINTEGUMENTA-LIKE 5) Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations. O.I. C.G. H.G.
101.4 99.9 31.8 At2g24560 816992 carboxylesterase/ hydrolase, acting on ester bonds F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
97.2 99.9 188.7 At5g02260 831736 ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9) member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
89.4 99.9 68.1 At4g27730 828887 OPT6 (OLIGOPEPTIDE TRANSPORTER 1) oligopeptide transporter O.I. C.G. H.G.
88.9 99.9 170.5 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB O.I. C.G. H.G.
79.7 99.9 129.2 At5g14570 831308 ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7) Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane. O.I. C.G. H.G.
78.0 99.9 78.6 At5g24130 832478 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM O.I. C.G. H.G.
76.8 99.9 26.5 At5g17490 831615 RGL3 (RGA-LIKE PROTEIN 3) DELLA subfamily member involved in GA signal transduction O.I. C.G. H.G.
75.4 99.9 155.7 At1g43780 840974 scpl44 (serine carboxypeptidase-like 44) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO O.I. C.G. H.G.
74.1 99.9 50.6 At2g26040 817145 Bet v I allergen family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO O.I. C.G. H.G.
73.2 99.9 82.4 At4g24150 828515 AtGRF8 (GROWTH-REGULATING FACTOR 8) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower. O.I. C.G. H.G.
68.8 99.9 33.6 At5g41650 834167 lactoylglutathione lyase family protein / glyoxalase I family protein F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO O.I. C.G. H.G.
67.5 99.8 187.9 At4g16210 827314 ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A) F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA O.I. C.G. H.G.
67.4 99.8 45.8 At1g48660 841288 auxin-responsive GH3 family protein F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF O.I. C.G. H.G.
66.8 99.8 90.6 At4g21490 828234 NDB3 F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
66.6 99.8 36.3 At4g37580 829913 HLS1 (HOOKLESS 1) involved in apical hook development. putative N-acetyltransferase O.I. C.G. H.G.
66.0 99.8 59.3 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
65.2 99.8 88.0 At5g10120 830876 ethylene insensitive 3 family protein F:transcription factor activity;P:regulation of transcription;C:nucleus;POM O.I. C.G. H.G.
64.8 99.8 57.0 At3g24650 822061 ABI3 (ABA INSENSITIVE 3) Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed. O.I. C.G. H.G.
63.8 99.8 21.5 At1g72570 843589 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV O.I. C.G. H.G.
63.6 99.8 115.4 At5g19520 832072 MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV O.I. C.G. H.G.
62.2 99.8 54.3 At5g45920 834632 carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO O.I. C.G. H.G.
61.6 99.8 176.4 At1g64970 842805 G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE) gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves O.I. C.G. H.G.
61.0 99.8 38.6 At5g44700 834499 GSO2 (GASSHO 2) Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis. O.I. C.G. H.G.
60.7 99.8 31.9 At1g80340 844374 GA3OX2 (GIBBERELLIN 3-OXIDASE 2) Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20. O.I. C.G. H.G.
58.8 99.8 26.0 At3g45320 823670 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
57.9 99.8 34.4 At2g03590 814888 ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1) Encodes a member of a class of allantoin transporters. O.I. C.G. H.G.
57.0 99.8 153.4 At1g17020 838272 SRG1 (SENESCENCE-RELATED GENE 1) Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene. O.I. C.G. H.G.
52.7 99.8 60.6 At5g02580 831095 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
52.1 99.8 25.5 At3g28345 822463 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV O.I. C.G. H.G.
50.6 99.8 107.6 At1g80640 844403 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
49.7 99.8 53.3 At3g23790 821961 AMP-binding protein, putative F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV O.I. C.G. H.G.
48.0 99.8 74.7 At1g60160 842311 potassium transporter family protein F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:chloroplast;BPOFAV O.I. C.G. H.G.
48.0 99.8 16.1 At5g65510 836677 AIL7 (AINTEGUMENTA-like 7) F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB O.I. C.G. H.G.
46.7 99.8 41.2 At1g76500 843983 SOB3 (SUPPRESSOR OF PHYB-4#3) Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light O.I. C.G. H.G.
44.3 99.8 80.5 At2g23110 816843 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
42.6 99.8 7.4 At5g03310 831879 auxin-responsive family protein F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P O.I. C.G. H.G.
42.4 99.8 214.6 At4g30810 829204 scpl29 (serine carboxypeptidase-like 29) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
42.2 99.8 184.9 At5g56260 835725 dimethylmenaquinone methyltransferase family protein F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM O.I. C.G. H.G.
42.2 99.8 64.3 At1g15180 838084 MATE efflux family protein F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA O.I. C.G. H.G.
41.7 99.8 222.0 At4g12910 826903 scpl20 (serine carboxypeptidase-like 20) F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB O.I. C.G. H.G.
41.3 99.8 109.9 At5g45650 834605 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM O.I. C.G. H.G.
39.8 99.8 87.2 At5g63810 836501 BGAL10 (beta-galactosidase 10) member of Glycoside Hydrolase Family 35 O.I. C.G. H.G.
39.6 99.8 16.2 At3g63350 825510 AT-HSFA7B member of Heat Stress Transcription Factor (Hsf) family O.I. C.G. H.G.
39.3 99.8 163.7 At5g15120 831364 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO O.I. C.G. H.G.
39.1 99.8 31.4 At4g38210 829977 ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20) expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
38.9 99.8 221.7 At1g02640 837940 BXL2 (BETA-XYLOSIDASE 2) encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members. O.I. C.G. H.G.
38.6 99.8 242.9 At2g42790 818879 CSY3 (citrate synthase 3) Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development. O.I. C.G. H.G.
38.5 99.8 17.4 At1g28650 839765 lipase, putative F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM O.I. C.G. H.G.
38.4 99.8 66.6 At3g03450 821251 RGL2 (RGA-LIKE 2) Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development. O.I. C.G. H.G.
38.1 99.8 43.3 At5g44460 834473 calcium-binding protein, putative F:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOB O.I. C.G. H.G.
37.5 99.7 83.8 At4g36910 829844 LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2) Has a cystathionine Beta-synthase domain. O.I. C.G. H.G.
37.1 99.7 223.4 At5g14450 831296 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM O.I. C.G. H.G.
37.0 99.7 174.6 At2g47780 819390 rubber elongation factor (REF) protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
36.5 99.7 51.2 At5g49700 835033 DNA-binding protein-related F:unknown;P:biological_process unknown;C:unknown;PMBF O.I. C.G. H.G.
36.4 99.7 155.9 At2g37640 818341 EXP3 member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana. O.I. C.G. H.G.
36.4 99.7 81.5 At5g13360 831177 auxin-responsive GH3 family protein F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF O.I. C.G. H.G.
35.8 99.7 28.0 At5g14580 831309 polyribonucleotide nucleotidyltransferase, putative F:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAF O.I. C.G. H.G.
35.7 99.7 61.7 At2g22840 816815 AtGRF1 (GROWTH-REGULATING FACTOR 1) Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower O.I. C.G. H.G.
35.6 99.7 38.8 At3g18510 821381 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
35.0 99.7 26.6 At1g26260 839167 CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5) Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1. O.I. C.G. H.G.
34.6 99.7 28.8 At2g34960 818060 CAT5 (CATIONIC AMINO ACID TRANSPORTER 5) Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane. O.I. C.G. H.G.
34.4 99.7 109.4 At5g46180 834660 delta-OAT ornithine delta-aminotransferase O.I. C.G. H.G.
34.1 99.7 49.8 At4g26790 828786 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM O.I. C.G. H.G.
33.8 99.7 66.0 At3g23800 821962 SBP3 (selenium-binding protein 3) F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA O.I. C.G. H.G.
33.8 99.7 45.4 At1g09960 837530 SUT4 (SUCROSE TRANSPORTER 4) low affinity (10mM) sucrose transporter in sieve elements (phloem) O.I. C.G. H.G.
33.7 99.7 34.2 At2g34340 817996 unknown protein F:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;P O.I. C.G. H.G.
33.6 99.7 218.6 At3g45310 823669 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF O.I. C.G. H.G.
32.5 99.7 75.7 At1g64110 842716 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
32.5 99.7 21.3 At4g11140 826715 CRF1 (CYTOKININ RESPONSE FACTOR 1) encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1). O.I. C.G. H.G.
32.0 99.7 228.5 At2g22780 816808 PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1) encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA. O.I. C.G. H.G.
31.1 99.7 210.9 At5g08260 830722 scpl35 (serine carboxypeptidase-like 35) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB O.I. C.G. H.G.
30.9 99.7 49.2 At2g33330 817896 PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3) Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain. O.I. C.G. H.G.
30.9 99.7 37.9 At3g48700 824031 ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13) F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV O.I. C.G. H.G.
30.6 99.7 89.4 At2g39970 818584 peroxisomal membrane protein (PMP36) F:binding;P:transport;C:peroxisomal membrane, mitochondrial inner membrane, plasma membrane;MFPO O.I. C.G. H.G.
30.5 99.7 65.2 At3g60070 825177 - F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF O.I. C.G. H.G.
30.1 99.7 213.1 At5g05290 830411 ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2) Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio) O.I. C.G. H.G.
30.1 99.7 17.9 At1g04920 839382 ATSPS3F (sucrose phosphate synthase 3F) Encodes a protein with putative sucrose-phosphate synthase activity. O.I. C.G. H.G.
29.9 99.7 54.4 At4g27640 828875 importin beta-2 subunit family protein F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFOPB O.I. C.G. H.G.
29.8 99.7 86.3 At5g27120 832770 SAR DNA-binding protein, putative SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein O.I. C.G. H.G.
29.7 99.7 173.4 At3g27020 822319 YSL6 (YELLOW STRIPE LIKE 6) Arabidopsis thaliana metal-nicotianamine transporter YSL6 O.I. C.G. H.G.
29.4 99.7 23.7 At4g39500 830104 CYP96A11 member of CYP96A O.I. C.G. H.G.
29.1 99.7 192.3 At1g75830 843916 LCR67 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
28.8 99.7 30.4 At3g04460 819602 PEX12 RING finger protein involved in peroxisome biogenesis. O.I. C.G. H.G.
28.2 99.7 116.3 At5g39850 833981 40S ribosomal protein S9 (RPS9C) F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA O.I. C.G. H.G.
28.0 99.7 194.3 At3g61070 825279 PEX11E member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation. O.I. C.G. H.G.
27.5 99.7 124.7 At3g23580 821937 RNR2A (RIBONUCLEOTIDE REDUCTASE 2A) Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development. O.I. C.G. H.G.
27.5 99.7 68.5 At4g08290 826383 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF O.I. C.G. H.G.
27.3 99.7 133.6 At1g29980 839877 - F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB O.I. C.G. H.G.
27.2 99.7 160.0 At5g66780 836811 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
27.1 99.7 72.9 At1g03790 839408 SOM (SOMNUS) Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180). O.I. C.G. H.G.
27.1 99.7 24.7 At5g08470 830746 PEX1 (peroxisome 1) an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals. O.I. C.G. H.G.
26.9 99.7 42.9 At2g02780 814807 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
26.8 99.7 34.5 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
26.8 99.7 31.3 At4g30150 829138 - F:unknown;P:unknown;C:unknown;POMVB O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
184.9	100.0	55.2	At2g40220	818614	ABI4 (ABA INSENSITIVE 4)	encodes a member of the DREB subfamily A-3 of ERF/AP2 transcription factor family (ABI4). The protein contains one AP2 domain. There is only one member in this family. Involved in abscisic acid (ABA) signal transduction, ABA-mediated glucose response, and hexokinase-dependent sugar responses. Expressed most abundantly in developing siliques and to a lesser degree in seedlings.	O.I.	C.G.	H.G.
179.1	100.0	131.0	At3g05190	819683	aminotransferase class IV family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;OBPAFM	O.I.	C.G.	H.G.
140.4	99.9	44.2	At4g27250	828833	dihydroflavonol 4-reductase family / dihydrokaempferol 4-reductase family	F:cinnamyl-alcohol dehydrogenase activity;P:cellular metabolic process, metabolic process;C:cellular_component unknown;BOPFMAV	O.I.	C.G.	H.G.
138.1	99.9	107.4	At1g60090	842304	BGLU4 (BETA GLUCOSIDASE 4)	F:cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;BOPMFA	O.I.	C.G.	H.G.
108.4	99.9	167.1	At1g33790	840271	jacalin lectin family protein	F:unknown;P:biological_process unknown;C:chloroplast;PO	O.I.	C.G.	H.G.
106.1	99.9	80.9	At5g57390	835845	AIL5 (AINTEGUMENTA-LIKE 5)	Encodes a member of the AP2 family of transcriptional regulators.May be involved in germination and seedling growth. Mutants are resistant to ABA analogs and are resistant to high nitrogen concentrations.	O.I.	C.G.	H.G.
101.4	99.9	31.8	At2g24560	816992	carboxylesterase/ hydrolase, acting on ester bonds	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
97.2	99.9	188.7	At5g02260	831736	ATEXPA9 (ARABIDOPSIS THALIANA EXPANSIN A9)	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
89.4	99.9	68.1	At4g27730	828887	OPT6 (OLIGOPEPTIDE TRANSPORTER 1)	oligopeptide transporter	O.I.	C.G.	H.G.
88.9	99.9	170.5	At2g24280	816963	serine carboxypeptidase S28 family protein	F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB	O.I.	C.G.	H.G.
79.7	99.9	129.2	At5g14570	831308	ATNRT2.7 (Arabidopsis thaliana high affinity nitrate transporter 2.7)	Encodes ATNRT2.7, a nitrate transporter that controls nitrate content in seeds. Expression is detected in reproductive organs and peaks in seeds. Localized to the vacuolar membrane.	O.I.	C.G.	H.G.
78.0	99.9	78.6	At5g24130	832478	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
76.8	99.9	26.5	At5g17490	831615	RGL3 (RGA-LIKE PROTEIN 3)	DELLA subfamily member involved in GA signal transduction	O.I.	C.G.	H.G.
75.4	99.9	155.7	At1g43780	840974	scpl44 (serine carboxypeptidase-like 44)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBO	O.I.	C.G.	H.G.
74.1	99.9	50.6	At2g26040	817145	Bet v I allergen family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
73.2	99.9	82.4	At4g24150	828515	AtGRF8 (GROWTH-REGULATING FACTOR 8)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Involved in leaf development and expressed in shoot and flower.	O.I.	C.G.	H.G.
68.8	99.9	33.6	At5g41650	834167	lactoylglutathione lyase family protein / glyoxalase I family protein	F:catalytic activity;P:metabolic process;C:cellular_component unknown;PBO	O.I.	C.G.	H.G.
67.5	99.8	187.9	At4g16210	827314	ECHIA (ENOYL-COA HYDRATASE/ISOMERASE A)	F:catalytic activity;P:metabolic process;C:peroxisome;BOMFPA	O.I.	C.G.	H.G.
67.4	99.8	45.8	At1g48660	841288	auxin-responsive GH3 family protein	F:molecular_function unknown;P:response to auxin stimulus;C:cellular_component unknown;OPBMF	O.I.	C.G.	H.G.
66.8	99.8	90.6	At4g21490	828234	NDB3	F:NADH dehydrogenase activity;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
66.6	99.8	36.3	At4g37580	829913	HLS1 (HOOKLESS 1)	involved in apical hook development. putative N-acetyltransferase	O.I.	C.G.	H.G.
66.0	99.8	59.3	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
65.2	99.8	88.0	At5g10120	830876	ethylene insensitive 3 family protein	F:transcription factor activity;P:regulation of transcription;C:nucleus;POM	O.I.	C.G.	H.G.
64.8	99.8	57.0	At3g24650	822061	ABI3 (ABA INSENSITIVE 3)	Homologous to the maize transcription factor Viviparous-1. Full length ABI3 protein binds to the highly conserved RY motif [DNA motif CATGCA(TG)], present in many seed-specific promoters, and the B3 domains of this transcription factor is necessary for the specific interaction with the RY element. Transcriptional activity of ABI3 requires the B3 DNA-binding domain and an activation domain. In addition to the known N-terminal-located activation domain, a second transcription activation domain was found in the B1 region of ABI3. ABI3 is essential for seed maturation. Regulator of the transition between embryo maturation and early seedling development. Putative seed-specific transcriptional activator. Mutants exhibit decreased responsiveness to ABA suggesting that ABI3 protein participates in the ABA perception/transduction cascade. Based on double mutant analyses, ABI3 interacts genetically with both FUS3 and LEC1 and is involved in controlling accumulation of chlorophyll and anthocyanins, sensitivity to abscisic acid, and expression of the members of the 12S storage protein gene family. In addition, both FUS3 and LEC1 regulate positively the abundance of the ABI3 protein in the seed.	O.I.	C.G.	H.G.
63.8	99.8	21.5	At1g72570	843589	DNA binding / transcription factor	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POBV	O.I.	C.G.	H.G.
63.6	99.8	115.4	At5g19520	832072	MSL9 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 9)	F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:nucleus, plasma membrane, membrane;BOFPAV	O.I.	C.G.	H.G.
62.2	99.8	54.3	At5g45920	834632	carboxylesterase/ hydrolase/ hydrolase, acting on ester bonds	F:hydrolase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:cellular_component unknown;FPBMO	O.I.	C.G.	H.G.
61.6	99.8	176.4	At1g64970	842805	G-TMT (GAMMA-TOCOPHEROL METHYLTRANSFERASE)	gamma-tocopherol methyltransferase (g-TMT) mRNA, nuclear; mutant has Deficient in alpha and beta tocopherol; Accumulates gamma tocopherol in leaves	O.I.	C.G.	H.G.
61.0	99.8	38.6	At5g44700	834499	GSO2 (GASSHO 2)	Encodes GASSHO2 (GSO2), a putative leucine-rich repeat transmembrane-type receptor kinase. GSO2 and a homolog GSO1 (At4g20140) are required for the formation of a normal epidermal surface during embryogenesis.	O.I.	C.G.	H.G.
60.7	99.8	31.9	At1g80340	844374	GA3OX2 (GIBBERELLIN 3-OXIDASE 2)	Encodes a protein with gibberellin 3 β-hydroxylase activity. The protein was heterologously expressed in E. coli and shown to catalyze the hydroxylation of both GA9 and GA20.	O.I.	C.G.	H.G.
58.8	99.8	26.0	At3g45320	823670	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
57.9	99.8	34.4	At2g03590	814888	ATUPS1 (ARABIDOPSIS THALIANA UREIDE PERMEASE 1)	Encodes a member of a class of allantoin transporters.	O.I.	C.G.	H.G.
57.0	99.8	153.4	At1g17020	838272	SRG1 (SENESCENCE-RELATED GENE 1)	Encodes a novel member of the Fe(II)/ascorbate oxidase gene family; senescence-related gene.	O.I.	C.G.	H.G.
52.7	99.8	60.6	At5g02580	831095	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
52.1	99.8	25.5	At3g28345	822463	ABC transporter family protein	F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:plasma membrane;BOMAFPV	O.I.	C.G.	H.G.
50.6	99.8	107.6	At1g80640	844403	protein kinase family protein	F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
49.7	99.8	53.3	At3g23790	821961	AMP-binding protein, putative	F:catalytic activity;P:metabolic process;C:chloroplast envelope;BOMFPAV	O.I.	C.G.	H.G.
48.0	99.8	74.7	At1g60160	842311	potassium transporter family protein	F:potassium ion transmembrane transporter activity;P:potassium ion transport;C:chloroplast;BPOFAV	O.I.	C.G.	H.G.
48.0	99.8	16.1	At5g65510	836677	AIL7 (AINTEGUMENTA-like 7)	F:transcription factor activity, DNA binding;P:organ morphogenesis, regulation of transcription, DNA-dependent;C:nucleus;POB	O.I.	C.G.	H.G.
46.7	99.8	41.2	At1g76500	843983	SOB3 (SUPPRESSOR OF PHYB-4#3)	Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light	O.I.	C.G.	H.G.
44.3	99.8	80.5	At2g23110	816843	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
42.6	99.8	7.4	At5g03310	831879	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;P	O.I.	C.G.	H.G.
42.4	99.8	214.6	At4g30810	829204	scpl29 (serine carboxypeptidase-like 29)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
42.2	99.8	184.9	At5g56260	835725	dimethylmenaquinone methyltransferase family protein	F:ribonuclease inhibitor activity;P:regulation of RNA metabolic process;C:cellular_component unknown;BOPAFM	O.I.	C.G.	H.G.
42.2	99.8	64.3	At1g15180	838084	MATE efflux family protein	F:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMA	O.I.	C.G.	H.G.
41.7	99.8	222.0	At4g12910	826903	scpl20 (serine carboxypeptidase-like 20)	F:serine-type carboxypeptidase activity;P:proteolysis;C:vacuole;PMFOB	O.I.	C.G.	H.G.
41.3	99.8	109.9	At5g45650	834605	subtilase family protein	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM	O.I.	C.G.	H.G.
39.8	99.8	87.2	At5g63810	836501	BGAL10 (beta-galactosidase 10)	member of Glycoside Hydrolase Family 35	O.I.	C.G.	H.G.
39.6	99.8	16.2	At3g63350	825510	AT-HSFA7B	member of Heat Stress Transcription Factor (Hsf) family	O.I.	C.G.	H.G.
39.3	99.8	163.7	At5g15120	831364	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMO	O.I.	C.G.	H.G.
39.1	99.8	31.4	At4g38210	829977	ATEXPA20 (ARABIDOPSIS THALIANA EXPANSIN A20)	expansin -like protein. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
38.9	99.8	221.7	At1g02640	837940	BXL2 (BETA-XYLOSIDASE 2)	encodes a protein similar to a beta-xylosidase located in the extracellular matrix. This is a member of glycosyl hydrolase family 3 and has six other closely related members.	O.I.	C.G.	H.G.
38.6	99.8	242.9	At2g42790	818879	CSY3 (citrate synthase 3)	Encodes a peroxisomal citrate synthase that is expressed throughout seedling and shoot development.	O.I.	C.G.	H.G.
38.5	99.8	17.4	At1g28650	839765	lipase, putative	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM	O.I.	C.G.	H.G.
38.4	99.8	66.6	At3g03450	821251	RGL2 (RGA-LIKE 2)	Encodes a DELLA protein, a member of the GRAS superfamily of putative transcription factors. DELLA proteins restrain the cell proliferation and expansion that drives plant growth. Negative regulator of the response to GA in controlling seed germination. GA triggers the degradation of RGL2 protein in a process blocked by both proteasome inhibitors and serine/threonine phosphatase inhibitors. The protein undergoes degradation in response to GA via the 26S proteasome. RGL2 may be involved in reducing ROS accumulation in response to stress by up-regulating the transcription of superoxide dismutases. Rapidly degraded in response to GA. Regulates GA-promoted seed germination. Involved in flower and fruit development.	O.I.	C.G.	H.G.
38.1	99.8	43.3	At5g44460	834473	calcium-binding protein, putative	F:calcium ion binding;P:response to cadmium ion;C:unknown;MPFOB	O.I.	C.G.	H.G.
37.5	99.7	83.8	At4g36910	829844	LEJ2 (LOSS OF THE TIMING OF ET AND JA BIOSYNTHESIS 2)	Has a cystathionine Beta-synthase domain.	O.I.	C.G.	H.G.
37.1	99.7	223.4	At5g14450	831296	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:plant-type cell wall;PBFOM	O.I.	C.G.	H.G.
37.0	99.7	174.6	At2g47780	819390	rubber elongation factor (REF) protein-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
36.5	99.7	51.2	At5g49700	835033	DNA-binding protein-related	F:unknown;P:biological_process unknown;C:unknown;PMBF	O.I.	C.G.	H.G.
36.4	99.7	155.9	At2g37640	818341	EXP3	member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.	O.I.	C.G.	H.G.
36.4	99.7	81.5	At5g13360	831177	auxin-responsive GH3 family protein	F:unknown;P:response to auxin stimulus;C:cellular_component unknown;OBPMF	O.I.	C.G.	H.G.
35.8	99.7	28.0	At5g14580	831309	polyribonucleotide nucleotidyltransferase, putative	F:polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding;P:mRNA catabolic process, RNA processing;C:unknown;BOMPAF	O.I.	C.G.	H.G.
35.7	99.7	61.7	At2g22840	816815	AtGRF1 (GROWTH-REGULATING FACTOR 1)	Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower	O.I.	C.G.	H.G.
35.6	99.7	38.8	At3g18510	821381	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
35.0	99.7	26.6	At1g26260	839167	CIB5 (CRYPTOCHROME-INTERACTING BASIC-HELIX-LOOP-HELIX 5)	Encodes CIB5 (cryptochrome-interacting basic-helix-loop-helix). Related to CIB1 (AT4G34530). CIB5 interacts with CRY2 and forms heterodimer with CIB1 in vitro. Regulates flowering time redundantly with CIB1.	O.I.	C.G.	H.G.
34.6	99.7	28.8	At2g34960	818060	CAT5 (CATIONIC AMINO ACID TRANSPORTER 5)	Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. Mediates efficient uptake of Lys, Arg and Glu in a yeast system. Localized to the plasma membrane.	O.I.	C.G.	H.G.
34.4	99.7	109.4	At5g46180	834660	delta-OAT	ornithine delta-aminotransferase	O.I.	C.G.	H.G.
34.1	99.7	49.8	At4g26790	828786	GDSL-motif lipase/hydrolase family protein	F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM	O.I.	C.G.	H.G.
33.8	99.7	66.0	At3g23800	821962	SBP3 (selenium-binding protein 3)	F:selenium binding;P:unknown;C:cellular_component unknown;OMBPA	O.I.	C.G.	H.G.
33.8	99.7	45.4	At1g09960	837530	SUT4 (SUCROSE TRANSPORTER 4)	low affinity (10mM) sucrose transporter in sieve elements (phloem)	O.I.	C.G.	H.G.
33.7	99.7	34.2	At2g34340	817996	unknown protein	F:molecular_function unknown;P:response to gibberellin stimulus;C:cellular_component unknown;P	O.I.	C.G.	H.G.
33.6	99.7	218.6	At3g45310	823669	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPBVAF	O.I.	C.G.	H.G.
32.5	99.7	75.7	At1g64110	842716	AAA-type ATPase family protein	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
32.5	99.7	21.3	At4g11140	826715	CRF1 (CYTOKININ RESPONSE FACTOR 1)	encodes a member of the ERF (ethylene response factor) subfamily B-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. Also named as CRF1 (cytokinin response factor 1).	O.I.	C.G.	H.G.
32.0	99.7	228.5	At2g22780	816808	PMDH1 (PEROXISOMAL NAD-MALATE DEHYDROGENASE 1)	encodes an peroxisomal NAD-malate dehydrogenase that is involved in fatty acid beta-oxidation through providing NAD to the process of converting fatty acyl CoA to acetyl CoA.	O.I.	C.G.	H.G.
31.1	99.7	210.9	At5g08260	830722	scpl35 (serine carboxypeptidase-like 35)	F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB	O.I.	C.G.	H.G.
30.9	99.7	49.2	At2g33330	817896	PDLP3 (PLASMODESMATA-LOCATED PROTEIN 3)	Encodes a plasmodesmal protein that affects the intercellular movement of molecules through the plasmodesmata. The protein has two DUF26 domains and a single transmembrane domain.	O.I.	C.G.	H.G.
30.9	99.7	37.9	At3g48700	824031	ATCXE13 (ARABIDOPSIS THALIANA CARBOXYESTERASE 13)	F:hydrolase activity;P:metabolic process;C:cellular_component unknown;BMOPFAV	O.I.	C.G.	H.G.
30.6	99.7	89.4	At2g39970	818584	peroxisomal membrane protein (PMP36)	F:binding;P:transport;C:peroxisomal membrane, mitochondrial inner membrane, plasma membrane;MFPO	O.I.	C.G.	H.G.
30.5	99.7	65.2	At3g60070	825177	-	F:molecular_function unknown;P:biological_process unknown;C:membrane;BOMPF	O.I.	C.G.	H.G.
30.1	99.7	213.1	At5g05290	830411	ATEXPA2 (ARABIDOPSIS THALIANA EXPANSIN A2)	Encodes an expansin. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)	O.I.	C.G.	H.G.
30.1	99.7	17.9	At1g04920	839382	ATSPS3F (sucrose phosphate synthase 3F)	Encodes a protein with putative sucrose-phosphate synthase activity.	O.I.	C.G.	H.G.
29.9	99.7	54.4	At4g27640	828875	importin beta-2 subunit family protein	F:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFOPB	O.I.	C.G.	H.G.
29.8	99.7	86.3	At5g27120	832770	SAR DNA-binding protein, putative	SAR DNA-binding protein, putative, strong similarity to SAR DNA-binding protein-1 (Pisum sativum) GI:3132696; contains Pfam profile PF01798: Putative snoRNA binding domain; has similarity to MAR binding NOP58 protein	O.I.	C.G.	H.G.
29.7	99.7	173.4	At3g27020	822319	YSL6 (YELLOW STRIPE LIKE 6)	Arabidopsis thaliana metal-nicotianamine transporter YSL6	O.I.	C.G.	H.G.
29.4	99.7	23.7	At4g39500	830104	CYP96A11	member of CYP96A	O.I.	C.G.	H.G.
29.1	99.7	192.3	At1g75830	843916	LCR67	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
28.8	99.7	30.4	At3g04460	819602	PEX12	RING finger protein involved in peroxisome biogenesis.	O.I.	C.G.	H.G.
28.2	99.7	116.3	At5g39850	833981	40S ribosomal protein S9 (RPS9C)	F:structural constituent of ribosome;P:translation;C:cytosolic small ribosomal subunit, membrane;POBMFA	O.I.	C.G.	H.G.
28.0	99.7	194.3	At3g61070	825279	PEX11E	member of the peroxin11 (PEX11) gene family, integral to peroxisome membrane, controls peroxisome proliferation.	O.I.	C.G.	H.G.
27.5	99.7	124.7	At3g23580	821937	RNR2A (RIBONUCLEOTIDE REDUCTASE 2A)	Encodes one of the 3 ribonucleotide reductase (RNR) small subunit genes (RNR2A). Functionally redundant with the ribonucleotide reductase TSO2. mRNA was shown to specifically accumulate during the S-phase of the cell cycle in synchronized tobacco BY2 cells. Critical for cell cycle progression, DNA damage repair and plant development.	O.I.	C.G.	H.G.
27.5	99.7	68.5	At4g08290	826383	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;BPOAMF	O.I.	C.G.	H.G.
27.3	99.7	133.6	At1g29980	839877	-	F:unknown;P:biological_process unknown;C:plasma membrane, anchored to membrane;PB	O.I.	C.G.	H.G.
27.2	99.7	160.0	At5g66780	836811	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
27.1	99.7	72.9	At1g03790	839408	SOM (SOMNUS)	Encodes SOMNUS (SOM), a nucleus-localized CCCH-type zinc finger protein. SOM negatively regulates light-dependent seed germination downstream of PIL5 (AT2G20180).	O.I.	C.G.	H.G.
27.1	99.7	24.7	At5g08470	830746	PEX1 (peroxisome 1)	an AAA-ATPase that is the probable Arabidopsis orthologue of one of the AAA-ATPases involved in peroxisome biogenesis in yeasts and mammals.	O.I.	C.G.	H.G.
26.9	99.7	42.9	At2g02780	814807	leucine-rich repeat transmembrane protein kinase, putative	F:protein serine/threonine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
26.8	99.7	34.5	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
26.8	99.7	31.3	At4g30150	829138	-	F:unknown;P:unknown;C:unknown;POMVB	O.I.	C.G.	H.G.

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GSM ID	GSM133305
Assay name	RIKEN-NAKABAYASHI2A
GSE experiment	GSE5700: AtGenExpress: Effect of ABA during seed imbibition

Microarray experiments to specifically-expressed genes

GSM ID GSM133305 Assay name RIKEN-NAKABAYASHI2A GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition

GSM ID GSM133305

Assay name RIKEN-NAKABAYASHI2A

GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition