CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133304

Assay name RIKEN-NAKABAYASHI1B

GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
2153.1 100.0 199.1 At4g26050 828711 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPBOFAV O.I. C.G. H.G.
2111.9 100.0 228.2 At3g16120 820857 dynein light chain, putative F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF O.I. C.G. H.G.
1820.8 100.0 134.9 At2g34740 818039 catalytic/ protein serine/threonine phosphatase F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
1715.4 100.0 95.0 At5g04010 830280 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
1648.1 100.0 160.3 At2g03520 814881 ATUPS4 (Arabidopsis thaliana ureide permease 4) Encodes AtUPS4, a member of the Arabidopsis ureide permease family. O.I. C.G. H.G.
1505.2 100.0 142.2 At5g04500 830329 glycosyltransferase family protein 47 a member of the Glycosyltransferase Family 64 (according to CAZy Database) O.I. C.G. H.G.
1503.5 100.0 249.9 At5g18450 831963 AP2 domain-containing transcription factor, putative encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
1415.7 100.0 144.1 At1g17010 838271 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM O.I. C.G. H.G.
1263.2 100.0 163.0 At1g16770 838248 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPB O.I. C.G. H.G.
1208.2 100.0 125.0 At1g66770 842995 nodulin MtN3 family protein F:unknown;P:biological_process unknown;C:chloroplast, membrane;PMO O.I. C.G. H.G.
1198.1 100.0 86.9 At5g66430 836775 S-adenosyl-L-methionine:carboxyl methyltransferase family protein F:S-adenosyl-Lmethionine:benzoic acid acid carboxyl methyl transferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF O.I. C.G. H.G.
1195.2 100.0 224.9 At3g22490 821820 late embryogenesis abundant protein, putative / LEA protein, putative F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO O.I. C.G. H.G.
1177.8 100.0 169.3 At5g65550 836681 UDP-glucoronosyl/UDP-glucosyl transferase family protein F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF O.I. C.G. H.G.
1154.1 100.0 247.0 At2g36270 818199 ABI5 (ABA INSENSITIVE 5) Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages. O.I. C.G. H.G.
1114.7 100.0 228.3 At5g51760 835250 AHG1 (ABA-hypersensitive germination 1) Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination. O.I. C.G. H.G.
1064.2 100.0 201.1 At1g23070 838915 unknown protein F:unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
1048.8 100.0 198.1 At1g30860 839970 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA O.I. C.G. H.G.
954.9 100.0 139.2 At4g02690 828203 glutamate binding F:glutamate binding;P:unknown;C:unknown;BOMPFV O.I. C.G. H.G.
945.7 100.0 113.5 At5g57790 835888 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
933.9 100.0 193.9 At5g43770 834399 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA O.I. C.G. H.G.
929.1 100.0 97.7 At5g16460 831507 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO O.I. C.G. H.G.
879.6 100.0 250.7 At1g16730 838244 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
852.1 100.0 171.5 At5g50170 835082 C2 domain-containing protein / GRAM domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO O.I. C.G. H.G.
839.7 100.0 96.2 At5g54000 835483 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM O.I. C.G. H.G.
829.8 100.0 219.6 At2g38465 818428 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P O.I. C.G. H.G.
824.1 100.0 126.6 At1g08170 837338 histone H2B family protein F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB O.I. C.G. H.G.
818.4 100.0 157.2 At2g29300 817479 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
753.8 100.0 117.6 At3g61040 825276 CYP76C7 encodes a protein with cytochrome P450 domain O.I. C.G. H.G.
724.2 100.0 199.6 At2g23240 816856 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;POMB O.I. C.G. H.G.
715.1 100.0 193.4 At5g03180 831897 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV O.I. C.G. H.G.
702.4 100.0 122.5 At5g04000 830279 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
700.5 100.0 78.0 At5g23230 832387 NIC2 (NICOTINAMIDASE 2) F:nicotinamidase activity, catalytic activity;P:NAD metabolic process, metabolic process;C:cellular_component unknown;BOAFP O.I. C.G. H.G.
677.9 100.0 128.1 At1g80090 844349 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOB O.I. C.G. H.G.
674.2 100.0 106.9 At2g34315 817993 disease resistance protein-related F:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
632.6 100.0 196.9 At4g25580 828663 stress-responsive protein-related F:unknown;P:unknown;C:cellular_component unknown;PMOFBV O.I. C.G. H.G.
600.1 100.0 276.0 At3g15280 820759 unknown protein F:molecular_function unknown;P:unknown;C:mitochondrion;PM O.I. C.G. H.G.
599.7 100.0 112.1 At1g46768 841117 RAP2.1 (related to AP2 1) encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10. O.I. C.G. H.G.
574.9 100.0 128.5 At4g12130 826821 aminomethyltransferase F:aminomethyltransferase activity;P:glycine catabolic process;C:cytoplasm;OBFMPA O.I. C.G. H.G.
570.4 100.0 62.2 At2g25340 817072 ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712) Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family. O.I. C.G. H.G.
531.0 100.0 214.7 At1g29680 839845 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.
523.6 100.0 193.5 At1g70840 843421 MLP31 (MLP-LIKE PROTEIN 31) F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P O.I. C.G. H.G.
519.6 100.0 178.2 At5g05220 830404 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
508.6 100.0 188.0 At2g23640 816896 reticulon family protein (RTNLB13) F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO O.I. C.G. H.G.
506.1 100.0 43.8 At1g12130 837765 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOMFPA O.I. C.G. H.G.
497.5 100.0 187.5 At5g55750 835669 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA O.I. C.G. H.G.
489.2 100.0 83.5 At3g03620 821204 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA O.I. C.G. H.G.
487.6 100.0 170.2 At5g50240 835089 PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2) L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced. O.I. C.G. H.G.
487.1 100.0 238.2 At1g15330 838102 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA O.I. C.G. H.G.
484.9 100.0 74.0 At5g57260 835831 CYP71B10 putative cytochrome P450 O.I. C.G. H.G.
476.1 100.0 244.1 At3g21380 821692 - F:unknown;P:unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
461.2 100.0 52.4 At2g06005 815154 unknown protein Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time. O.I. C.G. H.G.
454.6 100.0 225.5 At4g02280 828081 SUS3 (sucrose synthase 3) Encodes a protein with sucrose synthase activity (SUS3). O.I. C.G. H.G.
451.1 100.0 77.3 At1g03990 839342 alcohol oxidase-related F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFPAM O.I. C.G. H.G.
449.8 100.0 88.0 At5g59340 836053 WOX2 (WUSCHEL RELATED HOMEOBOX 2) Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain. O.I. C.G. H.G.
447.2 100.0 247.5 At5g44310 834454 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV O.I. C.G. H.G.
444.7 100.0 244.2 At1g75490 843885 DNA binding / transcription factor encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. O.I. C.G. H.G.
423.0 100.0 186.4 At5g60760 836197 2-phosphoglycerate kinase-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV O.I. C.G. H.G.
418.6 100.0 219.1 At4g27530 828862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
399.6 100.0 183.3 At5g45310 834567 unknown protein F:unknown;P:unknown;C:endomembrane system;OMVBFPA O.I. C.G. H.G.
397.8 100.0 217.3 At5g07360 830627 amidase family protein F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:unknown;BOFMPA O.I. C.G. H.G.
390.9 100.0 50.6 At5g64210 836542 AOX2 encodes an isoform of alternative oxidase, which is expressed in rosettes, stems, and roots. Transcript accumulates in dry seeds and decreased upon germination and is not affected by actinomycin A. Protein is localized to mitochondria. O.I. C.G. H.G.
389.5 100.0 135.5 At2g42950 818896 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO O.I. C.G. H.G.
385.3 100.0 161.3 At2g42000 818800 plant EC metallothionein-like family 15 protein F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF O.I. C.G. H.G.
381.7 100.0 119.1 At1g77950 844130 AGL67 (AGAMOUS-LIKE 67) F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO O.I. C.G. H.G.
379.3 100.0 135.1 At5g42290 834234 transcription activator-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
378.1 100.0 118.7 At1g48840 841306 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
378.1 100.0 114.8 At1g22600 838866 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF O.I. C.G. H.G.
376.3 100.0 89.7 At3g25870 822182 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
375.5 100.0 44.2 At4g27460 828855 CBS domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. C.G. H.G.
361.5 100.0 94.4 At3g27870 822407 haloacid dehalogenase-like hydrolase family protein F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV O.I. C.G. H.G.
359.0 100.0 155.7 At5g47810 834832 PFK2 (PHOSPHOFRUCTOKINASE 2) F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV O.I. C.G. H.G.
355.3 100.0 202.3 At4g36600 829812 - F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BPOMFVA O.I. C.G. H.G.
347.7 100.0 95.7 At1g28360 839732 ERF12 (ERF DOMAIN PROTEIN 12) encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole. O.I. C.G. H.G.
342.5 100.0 137.4 At5g39720 833968 AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA O.I. C.G. H.G.
337.9 100.0 90.3 At5g66110 836743 metal ion binding F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM O.I. C.G. H.G.
333.1 100.0 103.1 At5g25180 832589 CYP71B14 putative cytochrome P450 O.I. C.G. H.G.
325.7 100.0 121.7 At5g60220 836144 TET4 (TETRASPANIN4) Member of TETRASPANIN family O.I. C.G. H.G.
323.6 100.0 77.4 At4g36620 829814 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO O.I. C.G. H.G.
318.5 100.0 155.8 At5g54300 835518 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA O.I. C.G. H.G.
317.9 100.0 114.1 At2g18340 816349 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFVA O.I. C.G. H.G.
317.1 100.0 130.0 At5g24970 832567 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;OBPMFAV O.I. C.G. H.G.
312.7 100.0 109.5 At1g14530 838015 THH1 (TOM THREE HOMOLOG 1) F:virion binding;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
309.4 100.0 73.9 At2g19930 816512 RNA-dependent RNA polymerase family protein F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO O.I. C.G. H.G.
299.5 100.0 204.7 At5g55240 835617 caleosin-related family protein / embryo-specific protein, putative F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO O.I. C.G. H.G.
298.7 100.0 183.8 At1g72100 843541 late embryogenesis abundant domain-containing protein / LEA domain-containing protein F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV O.I. C.G. H.G.
291.2 100.0 242.9 At4g10020 826593 AtHSD5 (hydroxysteroid dehydrogenase 5) F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV O.I. C.G. H.G.
290.0 100.0 203.1 At2g33520 817917 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF O.I. C.G. H.G.
289.5 100.0 208.4 At2g19900 816509 ATNADP-ME1 (NADP-malic enzyme 1) The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals. O.I. C.G. H.G.
287.5 100.0 228.7 At1g69800 843316 CBS domain-containing protein F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPAF O.I. C.G. H.G.
281.6 100.0 68.5 At3g12955 820481 auxin-responsive protein-related F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P O.I. C.G. H.G.
279.7 100.0 232.6 At1g19540 838541 isoflavone reductase, putative F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA O.I. C.G. H.G.
278.3 100.0 227.3 At2g28420 817390 lactoylglutathione lyase family protein / glyoxalase I family protein F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA O.I. C.G. H.G.
273.3 100.0 53.2 At3g42860 823332 zinc knuckle (CCHC-type) family protein F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;VMPFO O.I. C.G. H.G.
271.6 100.0 79.2 At4g16620 827363 integral membrane family protein / nodulin MtN21-related F:molecular_function unknown;P:unknown;C:membrane;PBOFAM O.I. C.G. H.G.
267.3 100.0 90.3 At1g24735 839082 O-methyltransferase F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA O.I. C.G. H.G.
265.6 100.0 230.6 At2g38820 818464 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO O.I. C.G. H.G.
261.1 100.0 117.9 At5g14180 831268 MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1) F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO O.I. C.G. H.G.
259.4 100.0 102.5 At5g54070 835493 AT-HSFA9 A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation. O.I. C.G. H.G.
256.8 100.0 65.5 At3g05510 819716 phospholipid/glycerol acyltransferase family protein F:acyltransferase activity;P:metabolic process;C:unknown;BOMFP O.I. C.G. H.G.
254.4 100.0 52.5 At4g18920 827627 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
2153.1	100.0	199.1	At4g26050	828711	leucine-rich repeat family protein	F:protein binding;P:biological_process unknown;C:cellular_component unknown;MPBOFAV	O.I.	C.G.	H.G.
2111.9	100.0	228.2	At3g16120	820857	dynein light chain, putative	F:microtubule motor activity;P:microtubule-based process;C:microtubule associated complex;MOPF	O.I.	C.G.	H.G.
1820.8	100.0	134.9	At2g34740	818039	catalytic/ protein serine/threonine phosphatase	F:protein serine/threonine phosphatase activity, catalytic activity;P:biological_process unknown;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
1715.4	100.0	95.0	At5g04010	830280	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
1648.1	100.0	160.3	At2g03520	814881	ATUPS4 (Arabidopsis thaliana ureide permease 4)	Encodes AtUPS4, a member of the Arabidopsis ureide permease family.	O.I.	C.G.	H.G.
1505.2	100.0	142.2	At5g04500	830329	glycosyltransferase family protein 47	a member of the Glycosyltransferase Family 64 (according to CAZy Database)	O.I.	C.G.	H.G.
1503.5	100.0	249.9	At5g18450	831963	AP2 domain-containing transcription factor, putative	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
1415.7	100.0	144.1	At1g17010	838271	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
1263.2	100.0	163.0	At1g16770	838248	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPB	O.I.	C.G.	H.G.
1208.2	100.0	125.0	At1g66770	842995	nodulin MtN3 family protein	F:unknown;P:biological_process unknown;C:chloroplast, membrane;PMO	O.I.	C.G.	H.G.
1198.1	100.0	86.9	At5g66430	836775	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	F:S-adenosyl-Lmethionine:benzoic acid acid carboxyl methyl transferase activity;P:biological_process unknown;C:cellular_component unknown;POBMF	O.I.	C.G.	H.G.
1195.2	100.0	224.9	At3g22490	821820	late embryogenesis abundant protein, putative / LEA protein, putative	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PBMVAO	O.I.	C.G.	H.G.
1177.8	100.0	169.3	At5g65550	836681	UDP-glucoronosyl/UDP-glucosyl transferase family protein	F:transferase activity, transferring glycosyl groups;P:metabolic process;C:unknown;PMBVOF	O.I.	C.G.	H.G.
1154.1	100.0	247.0	At2g36270	818199	ABI5 (ABA INSENSITIVE 5)	Encodes a member of the basic leucine zipper transcription factor family, involved in ABA signalling during seed maturation and germination. The Arabidopsis abscisic acid (ABA)-insensitive abi5 mutants have pleiotropic defects in ABA response, including decreased sensitivity to ABA inhibition of germination and altered expression of some ABA-regulated genes. Comparison of seed and ABA-inducible vegetative gene expression in wild-type and abi5-1 plants indicates that ABI5 regulates a subset of late embryogenesis-abundant genes during both developmental stages.	O.I.	C.G.	H.G.
1114.7	100.0	228.3	At5g51760	835250	AHG1 (ABA-hypersensitive germination 1)	Encodes AHG1 (ABA-hypersensitive germination 1), a putative protein phosphatase 2C (PP2C). Expressed in seeds. AHG1 functions in seed development and germination.	O.I.	C.G.	H.G.
1064.2	100.0	201.1	At1g23070	838915	unknown protein	F:unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
1048.8	100.0	198.1	At1g30860	839970	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:unknown;C:unknown;MOPFBVA	O.I.	C.G.	H.G.
954.9	100.0	139.2	At4g02690	828203	glutamate binding	F:glutamate binding;P:unknown;C:unknown;BOMPFV	O.I.	C.G.	H.G.
945.7	100.0	113.5	At5g57790	835888	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
933.9	100.0	193.9	At5g43770	834399	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MBPOFVA	O.I.	C.G.	H.G.
929.1	100.0	97.7	At5g16460	831507	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFO	O.I.	C.G.	H.G.
879.6	100.0	250.7	At1g16730	838244	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
852.1	100.0	171.5	At5g50170	835082	C2 domain-containing protein / GRAM domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;MPFO	O.I.	C.G.	H.G.
839.7	100.0	96.2	At5g54000	835483	oxidoreductase, 2OG-Fe(II) oxygenase family protein	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM	O.I.	C.G.	H.G.
829.8	100.0	219.6	At2g38465	818428	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;P	O.I.	C.G.	H.G.
824.1	100.0	126.6	At1g08170	837338	histone H2B family protein	F:DNA binding;P:nucleosome assembly;C:nucleus, nucleosome;MPOFB	O.I.	C.G.	H.G.
818.4	100.0	157.2	At2g29300	817479	tropinone reductase, putative / tropine dehydrogenase, putative	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
753.8	100.0	117.6	At3g61040	825276	CYP76C7	encodes a protein with cytochrome P450 domain	O.I.	C.G.	H.G.
724.2	100.0	199.6	At2g23240	816856	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;POMB	O.I.	C.G.	H.G.
715.1	100.0	193.4	At5g03180	831897	zinc finger (C3HC4-type RING finger) family protein	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMOFV	O.I.	C.G.	H.G.
702.4	100.0	122.5	At5g04000	830279	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
700.5	100.0	78.0	At5g23230	832387	NIC2 (NICOTINAMIDASE 2)	F:nicotinamidase activity, catalytic activity;P:NAD metabolic process, metabolic process;C:cellular_component unknown;BOAFP	O.I.	C.G.	H.G.
677.9	100.0	128.1	At1g80090	844349	CBS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FPMOB	O.I.	C.G.	H.G.
674.2	100.0	106.9	At2g34315	817993	disease resistance protein-related	F:GTP binding;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
632.6	100.0	196.9	At4g25580	828663	stress-responsive protein-related	F:unknown;P:unknown;C:cellular_component unknown;PMOFBV	O.I.	C.G.	H.G.
600.1	100.0	276.0	At3g15280	820759	unknown protein	F:molecular_function unknown;P:unknown;C:mitochondrion;PM	O.I.	C.G.	H.G.
599.7	100.0	112.1	At1g46768	841117	RAP2.1 (related to AP2 1)	encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.1). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.10.	O.I.	C.G.	H.G.
574.9	100.0	128.5	At4g12130	826821	aminomethyltransferase	F:aminomethyltransferase activity;P:glycine catabolic process;C:cytoplasm;OBFMPA	O.I.	C.G.	H.G.
570.4	100.0	62.2	At2g25340	817072	ATVAMP712 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 712)	Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.	O.I.	C.G.	H.G.
531.0	100.0	214.7	At1g29680	839845	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.
523.6	100.0	193.5	At1g70840	843421	MLP31 (MLP-LIKE PROTEIN 31)	F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P	O.I.	C.G.	H.G.
519.6	100.0	178.2	At5g05220	830404	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
508.6	100.0	188.0	At2g23640	816896	reticulon family protein (RTNLB13)	F:molecular_function unknown;P:biological_process unknown;C:endoplasmic reticulum;MPO	O.I.	C.G.	H.G.
506.1	100.0	43.8	At1g12130	837765	flavin-containing monooxygenase family protein / FMO family protein	F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:unknown;C:unknown;BOMFPA	O.I.	C.G.	H.G.
497.5	100.0	187.5	At5g55750	835669	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOFBVA	O.I.	C.G.	H.G.
489.2	100.0	83.5	At3g03620	821204	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:membrane;BPOFMA	O.I.	C.G.	H.G.
487.6	100.0	170.2	At5g50240	835089	PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2)	L-isoaspartyl methyltransferase 2 (PIMT2)gene, alternatively spliced.	O.I.	C.G.	H.G.
487.1	100.0	238.2	At1g15330	838102	CBS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPOBA	O.I.	C.G.	H.G.
484.9	100.0	74.0	At5g57260	835831	CYP71B10	putative cytochrome P450	O.I.	C.G.	H.G.
476.1	100.0	244.1	At3g21380	821692	-	F:unknown;P:unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
461.2	100.0	52.4	At2g06005	815154	unknown protein	Encodes one of the FRI interacting proteins: FRIGIDA INTERACTING PROTEIN 1 (FIP1)/At2g06005, FIP2/ At4g17060. FRI (At4G00650) is a major determinant of natural variation in Arabidopsis flowering time.	O.I.	C.G.	H.G.
454.6	100.0	225.5	At4g02280	828081	SUS3 (sucrose synthase 3)	Encodes a protein with sucrose synthase activity (SUS3).	O.I.	C.G.	H.G.
451.1	100.0	77.3	At1g03990	839342	alcohol oxidase-related	F:electron carrier activity, oxidoreductase activity, acting on CH-OH group of donors, oxidoreductase activity, FAD binding;P:unknown;C:unknown;BOFPAM	O.I.	C.G.	H.G.
449.8	100.0	88.0	At5g59340	836053	WOX2 (WUSCHEL RELATED HOMEOBOX 2)	Encodes a WUSCHEL-related homeobox gene family member with 65 amino acids in its homeodomain. Proteins in this family contain a sequence of eight residues (TLPLFPMH) downstream of the homeodomain called the WUS box. WOX2 has a putative Zinc finger domain downstream of the homeodomain. Transcripts are expressed in the egg cell, the zygote and the apical cell lineage and are reduced in met3-1 early embryos. This gene is necessary for cell divisions that form the apical embryo domain.	O.I.	C.G.	H.G.
447.2	100.0	247.5	At5g44310	834454	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:unknown;OMBFPAV	O.I.	C.G.	H.G.
444.7	100.0	244.2	At1g75490	843885	DNA binding / transcription factor	encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.	O.I.	C.G.	H.G.
423.0	100.0	186.4	At5g60760	836197	2-phosphoglycerate kinase-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMPBAFV	O.I.	C.G.	H.G.
418.6	100.0	219.1	At4g27530	828862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
399.6	100.0	183.3	At5g45310	834567	unknown protein	F:unknown;P:unknown;C:endomembrane system;OMVBFPA	O.I.	C.G.	H.G.
397.8	100.0	217.3	At5g07360	830627	amidase family protein	F:amidase activity, carbon-nitrogen ligase activity, with glutamine as amido-N-donor;P:acrylonitrile catabolic process, aldoxime metabolic process;C:unknown;BOFMPA	O.I.	C.G.	H.G.
390.9	100.0	50.6	At5g64210	836542	AOX2	encodes an isoform of alternative oxidase, which is expressed in rosettes, stems, and roots. Transcript accumulates in dry seeds and decreased upon germination and is not affected by actinomycin A. Protein is localized to mitochondria.	O.I.	C.G.	H.G.
389.5	100.0	135.5	At2g42950	818896	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
385.3	100.0	161.3	At2g42000	818800	plant EC metallothionein-like family 15 protein	F:zinc ion binding;P:biological_process unknown;C:unknown;PMOBF	O.I.	C.G.	H.G.
381.7	100.0	119.1	At1g77950	844130	AGL67 (AGAMOUS-LIKE 67)	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;PMFO	O.I.	C.G.	H.G.
379.3	100.0	135.1	At5g42290	834234	transcription activator-related	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
378.1	100.0	118.7	At1g48840	841306	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
378.1	100.0	114.8	At1g22600	838866	-	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPF	O.I.	C.G.	H.G.
376.3	100.0	89.7	At3g25870	822182	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
375.5	100.0	44.2	At4g27460	828855	CBS domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:unknown;P	O.I.	C.G.	H.G.
361.5	100.0	94.4	At3g27870	822407	haloacid dehalogenase-like hydrolase family protein	F:ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism;P:metabolic process, ATP biosynthetic process, phospholipid transport;C:integral to membrane, membrane;MBOFPAV	O.I.	C.G.	H.G.
359.0	100.0	155.7	At5g47810	834832	PFK2 (PHOSPHOFRUCTOKINASE 2)	F:6-phosphofructokinase activity;P:glycolysis;C:cytosol, 6-phosphofructokinase complex;BOMFPAV	O.I.	C.G.	H.G.
355.3	100.0	202.3	At4g36600	829812	-	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:unknown;BPOMFVA	O.I.	C.G.	H.G.
347.7	100.0	95.7	At1g28360	839732	ERF12 (ERF DOMAIN PROTEIN 12)	encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ERF12). The protein contains one AP2 domain. There are 15 members in this subfamily including ATERF-3, ATERF-4, ATERF-7, and leafy petiole.	O.I.	C.G.	H.G.
342.5	100.0	137.4	At5g39720	833968	AIG2L (AVIRULENCE INDUCED GENE 2 LIKE PROTEIN)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOFA	O.I.	C.G.	H.G.
337.9	100.0	90.3	At5g66110	836743	metal ion binding	F:metal ion binding;P:metal ion transport;C:plasma membrane;PFM	O.I.	C.G.	H.G.
333.1	100.0	103.1	At5g25180	832589	CYP71B14	putative cytochrome P450	O.I.	C.G.	H.G.
325.7	100.0	121.7	At5g60220	836144	TET4 (TETRASPANIN4)	Member of TETRASPANIN family	O.I.	C.G.	H.G.
323.6	100.0	77.4	At4g36620	829814	zinc finger (GATA type) family protein	F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMO	O.I.	C.G.	H.G.
318.5	100.0	155.8	At5g54300	835518	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPOFBA	O.I.	C.G.	H.G.
317.9	100.0	114.1	At2g18340	816349	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFVA	O.I.	C.G.	H.G.
317.1	100.0	130.0	At5g24970	832567	ABC1 family protein	F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;OBPMFAV	O.I.	C.G.	H.G.
312.7	100.0	109.5	At1g14530	838015	THH1 (TOM THREE HOMOLOG 1)	F:virion binding;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
309.4	100.0	73.9	At2g19930	816512	RNA-dependent RNA polymerase family protein	F:RNA-directed RNA polymerase activity;P:posttranscriptional gene silencing;C:cellular_component unknown;FPMO	O.I.	C.G.	H.G.
299.5	100.0	204.7	At5g55240	835617	caleosin-related family protein / embryo-specific protein, putative	F:calcium ion binding;P:biological_process unknown;C:cellular_component unknown;PFO	O.I.	C.G.	H.G.
298.7	100.0	183.8	At1g72100	843541	late embryogenesis abundant domain-containing protein / LEA domain-containing protein	F:unknown;P:embryonic development ending in seed dormancy;C:endomembrane system;BPOMFAV	O.I.	C.G.	H.G.
291.2	100.0	242.9	At4g10020	826593	AtHSD5 (hydroxysteroid dehydrogenase 5)	F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:endomembrane system;BOMFPAV	O.I.	C.G.	H.G.
290.0	100.0	203.1	At2g33520	817917	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMF	O.I.	C.G.	H.G.
289.5	100.0	208.4	At2g19900	816509	ATNADP-ME1 (NADP-malic enzyme 1)	The malic enzyme (EC 1.1.1.40) encoded by AtNADP-ME1 is expressed in response to developmental and cell-specific signals.	O.I.	C.G.	H.G.
287.5	100.0	228.7	At1g69800	843316	CBS domain-containing protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;MOBPAF	O.I.	C.G.	H.G.
281.6	100.0	68.5	At3g12955	820481	auxin-responsive protein-related	F:molecular_function unknown;P:response to auxin stimulus;C:mitochondrion;P	O.I.	C.G.	H.G.
279.7	100.0	232.6	At1g19540	838541	isoflavone reductase, putative	F:transcription repressor activity, binding, catalytic activity;P:regulation of nitrogen utilization, metabolic process;C:cellular_component unknown;BPFOVMA	O.I.	C.G.	H.G.
278.3	100.0	227.3	At2g28420	817390	lactoylglutathione lyase family protein / glyoxalase I family protein	F:lactoylglutathione lyase activity;P:carbohydrate metabolic process;C:cellular_component unknown;BOPMFA	O.I.	C.G.	H.G.
273.3	100.0	53.2	At3g42860	823332	zinc knuckle (CCHC-type) family protein	F:zinc ion binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;VMPFO	O.I.	C.G.	H.G.
271.6	100.0	79.2	At4g16620	827363	integral membrane family protein / nodulin MtN21-related	F:molecular_function unknown;P:unknown;C:membrane;PBOFAM	O.I.	C.G.	H.G.
267.3	100.0	90.3	At1g24735	839082	O-methyltransferase	F:O-methyltransferase activity;P:unknown;C:cytosol;BOPMFA	O.I.	C.G.	H.G.
265.6	100.0	230.6	At2g38820	818464	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO	O.I.	C.G.	H.G.
261.1	100.0	117.9	At5g14180	831268	MPL1 (MYZUS PERSICAE-INDUCED LIPASE 1)	F:catalytic activity;P:glycerol biosynthetic process, lipid metabolic process;C:endomembrane system;MFPBO	O.I.	C.G.	H.G.
259.4	100.0	102.5	At5g54070	835493	AT-HSFA9	A member of Heat Stress Transcription Factor (Hsf) family. Not responding to heat stress. Is regulated by the seed-specific transcription factor ABI3. In turn, it regulates other heat stress proteins including Hsp17.4-CI, Hsp17.7-CII and Hsp101 during seed maturation.	O.I.	C.G.	H.G.
256.8	100.0	65.5	At3g05510	819716	phospholipid/glycerol acyltransferase family protein	F:acyltransferase activity;P:metabolic process;C:unknown;BOMFP	O.I.	C.G.	H.G.
254.4	100.0	52.5	At4g18920	827627	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BPF	O.I.	C.G.	H.G.

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GSM ID	GSM133304
Assay name	RIKEN-NAKABAYASHI1B
GSE experiment	GSE5700: AtGenExpress: Effect of ABA during seed imbibition

Microarray experiments to specifically-expressed genes

GSM ID GSM133304 Assay name RIKEN-NAKABAYASHI1B GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition

GSM ID GSM133304

Assay name RIKEN-NAKABAYASHI1B

GSE experiment GSE5700: AtGenExpress: Effect of ABA during seed imbibition