Microarray experiments to specifically-expressed genes

GSM ID GSM133302
Assay name NO.27
GSE experiment GSE5699: AtGenExpress: ARR21C overexpression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
698.5100.0143.8At2g18590816374carbohydrate transmembrane transporter/ sugar:hydrogen symporterF:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAVO.I.C.G.H.G.
137.699.9123.7At5g50915835164basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFMO.I.C.G.H.G.
92.299.941.5At1g58170842184disease resistance-responsive protein-related / dirigent protein-relatedF:molecular_function unknown;P:N-terminal protein myristoylation, lignan biosynthetic process, defense response;C:endomembrane system;PO.I.C.G.H.G.
85.299.9329.4At2g02990814828RNS1 (RIBONUCLEASE 1)member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.O.I.C.G.H.G.
58.499.890.7At2g27070817249ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)member of Response Regulator: B- TypeO.I.C.G.H.G.
56.999.8104.3At3g48100823965ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.O.I.C.G.H.G.
53.499.878.6At4g25000828603AMY1 (ALPHA-AMYLASE-LIKE)Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).O.I.C.G.H.G.
49.499.830.2At1g02940839479GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
36.499.728.8At3g19350821469MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.O.I.C.G.H.G.
34.599.746.8At1g70560843393TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.O.I.C.G.H.G.
33.199.742.9At1g71140843454MATE efflux family proteinF:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMAO.I.C.G.H.G.
26.199.7268.6At2g43510818952ATTI1Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.O.I.C.G.H.G.
25.099.677.2At4g01430826685nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOAMFO.I.C.G.H.G.
22.899.614.5At4g26460828752-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
22.399.617.9At4g03610825661unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFAO.I.C.G.H.G.
22.299.642.1At4g02850828160phenazine biosynthesis PhzC/PhzF family proteinF:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPAO.I.C.G.H.G.
22.099.659.7At3g50900824254unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.499.649.9At5g46230834665unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
20.399.644.7At1g141308379722-oxoglutarate-dependent dioxygenase, putativeF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFMO.I.C.G.H.G.
20.299.657.8At5g02780831800In2-1 protein, putativeF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFAO.I.C.G.H.G.
19.999.6139.2At4g15210827185BAM5 (BETA-AMYLASE 5)cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.O.I.C.G.H.G.
19.399.646.9At5g15190831371unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PO.I.C.G.H.G.
18.599.597.3At1g65500842862unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
18.599.515.0At4g17660827486protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
17.899.5146.7At2g18660816381EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.O.I.C.G.H.G.
16.399.599.8At1g69880843324ATH8 (thioredoxin H-type 8)F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAVO.I.C.G.H.G.
16.299.518.7At1g01010839580ANAC001 (Arabidopsis NAC domain containing protein 1)F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;PO.I.C.G.H.G.
15.899.57.9At2g20070816526-F:molecular_function unknown;P:unknown;C:endomembrane system;PO.I.C.G.H.G.
15.699.549.9At5g50260835091cysteine proteinase, putativeF:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAFO.I.C.G.H.G.
15.699.510.8At1g77960844131unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVO.I.C.G.H.G.
15.499.557.6At2g37770818354aldo/keto reductase family proteinF:oxidoreductase activity;P:oxidation reduction;C:unknown;BOMFPAO.I.C.G.H.G.
14.699.436.9At1g21010838695unknown proteinF:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
14.599.475.1At2g29350817484SAG13senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenaseO.I.C.G.H.G.
14.499.449.8At5g60630836184unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POO.I.C.G.H.G.
14.499.416.2At2g40200818611basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFBO.I.C.G.H.G.
14.499.416.1At1g16530838223ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)F:unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
14.099.4128.2At5g26260832695meprin and TRAF homology domain-containing protein / MATH domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POFO.I.C.G.H.G.
13.499.458.5At1g215253766777-pseudogene of unknown proteinO.I.C.G.H.G.
13.299.464.2At1g10585837600transcription factorF:transcription factor activity;P:regulation of transcription;C:nucleus;PO.I.C.G.H.G.
13.099.465.4At5g22460832307esterase/lipase/thioesterase family proteinF:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOFO.I.C.G.H.G.
12.999.336.6At3g20100821553CYP705A19member of CYP705AO.I.C.G.H.G.
12.999.313.9At4g29570829078cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPOO.I.C.G.H.G.
12.899.343.8At5g66440836776unknown proteinF:molecular_function unknown;P:unknown;C:unknown;POMO.I.C.G.H.G.
12.799.350.8At3g62820825457invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
12.699.353.6At1g32940840188SBT3.5F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFMO.I.C.G.H.G.
12.599.3118.3At4g12500826862protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:unknown;POBMVFAO.I.C.G.H.G.
12.399.3105.8At4g37520829907peroxidase 50 (PER50) (P50) (PRXR2)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOMO.I.C.G.H.G.
12.399.336.6At3g01970821270WRKY45member of WRKY Transcription Factor; Group IO.I.C.G.H.G.
12.199.356.8At5g53870835468plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVAO.I.C.G.H.G.
12.199.38.5At4g03600825660unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
12.099.356.7At1g63090842612AtPP2-A11 (Phloem protein 2-A11)F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;PO.I.C.G.H.G.
11.899.372.8At3g51430824306YLS2strictosidine synthase-like proteinO.I.C.G.H.G.
11.799.365.9At1g19610838548PDF1.4Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.O.I.C.G.H.G.
11.199.247.4At2g29490817498ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).O.I.C.G.H.G.
11.099.210.2At4g29610829082cytidine deaminase, putative / cytidine aminohydrolase, putativeF:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFAO.I.C.G.H.G.
10.999.246.9At5g06720830561peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMVO.I.C.G.H.G.
10.799.211.4At2g33080817870AtRLP28 (Receptor Like Protein 28)F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVAO.I.C.G.H.G.
10.699.297.4At2g03760814903STEncodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.O.I.C.G.H.G.
10.699.278.7At1g19600838547pfkB-type carbohydrate kinase family proteinF:kinase activity;P:D-ribose catabolic process;C:cellular_component unknown;BOMPAFO.I.C.G.H.G.
10.299.248.6At5g17650831631glycine/proline-rich proteinF:unknown;P:unknown;C:unknown;MFPBOVAO.I.C.G.H.G.
10.199.267.4At5g21105832235L-ascorbate oxidase/ copper ion binding / oxidoreductaseF:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOAO.I.C.G.H.G.
10.199.212.6At5g12930831133unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABFO.I.C.G.H.G.
10.099.29.1At1g11300837672ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar bindingF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
9.999.163.5At1g74010843739strictosidine synthase family proteinF:strictosidine synthase activity;P:biosynthetic process;C:plant-type cell wall;PMBOAO.I.C.G.H.G.
9.999.16.2At5g33340833310CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1)Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation.O.I.C.G.H.G.
9.899.1202.6At2g31980817757cysteine proteinase inhibitor-relatedF:cysteine-type endopeptidase inhibitor activity;P:biological_process unknown;C:endomembrane system;PMOO.I.C.G.H.G.
9.699.128.2At5g42860834297unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMBO.I.C.G.H.G.
9.599.155.8At4g00490827959BAM2 (BETA-AMYLASE 2)Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.O.I.C.G.H.G.
9.299.14.0At5g57400835846unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
9.099.19.4At1g79960844336OFP14 (OVATE FAMILY PROTEIN 14)F:unknown;P:biological_process unknown;C:unknown;PFOMO.I.C.G.H.G.
8.999.017.5At3g53210824487nodulin MtN21 family proteinF:unknown;P:unknown;C:membrane;OBPAMO.I.C.G.H.G.
8.899.0177.1At4g12490826861protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFAO.I.C.G.H.G.
8.899.087.1At5g06870830578PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.O.I.C.G.H.G.
8.899.026.6At1g60730842367aldo/keto reductase family proteinF:oxidoreductase activity, aldo-keto reductase activity;P:oxidation reduction;C:unknown;BOFMPAO.I.C.G.H.G.
8.899.023.6At5g05860830471UGT76C2F:in 6 functions;P:metabolic process;C:unknown;PMBVOFO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage