CoP: Co-expressed Biological Processes

Microarray experiments to specifically-expressed genes

GSM ID GSM133300

Assay name NO.25

GSE experiment GSE5699: AtGenExpress: ARR21C overexpression

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
646.9 100.0 138.4 At2g18590 816374 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV O.I. C.G. H.G.
131.8 99.9 121.1 At5g50915 835164 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM O.I. C.G. H.G.
78.7 99.9 38.4 At1g58170 842184 disease resistance-responsive protein-related / dirigent protein-related F:molecular_function unknown;P:N-terminal protein myristoylation, lignan biosynthetic process, defense response;C:endomembrane system;P O.I. C.G. H.G.
70.1 99.9 298.9 At2g02990 814828 RNS1 (RIBONUCLEASE 1) member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid. O.I. C.G. H.G.
69.3 99.9 98.8 At2g27070 817249 ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13) member of Response Regulator: B- Type O.I. C.G. H.G.
58.6 99.8 105.8 At3g48100 823965 ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5) Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay. O.I. C.G. H.G.
57.8 99.8 81.8 At4g25000 828603 AMY1 (ALPHA-AMYLASE-LIKE) Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830). O.I. C.G. H.G.
57.8 99.8 32.7 At1g02940 839479 GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5) Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
36.9 99.7 48.3 At1g70560 843393 TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1) TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln. O.I. C.G. H.G.
30.3 99.7 41.0 At1g71140 843454 MATE efflux family protein F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA O.I. C.G. H.G.
29.2 99.7 16.4 At4g26460 828752 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
27.3 99.7 80.8 At4g01430 826685 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF O.I. C.G. H.G.
25.7 99.7 24.2 At3g19350 821469 MPC (MATERNALLY EXPRESSED PAB C-TERMINAL) Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM. O.I. C.G. H.G.
25.1 99.6 49.7 At1g14130 837972 2-oxoglutarate-dependent dioxygenase, putative F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFM O.I. C.G. H.G.
22.9 99.6 251.6 At2g43510 818952 ATTI1 Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory. O.I. C.G. H.G.
22.6 99.6 148.2 At4g15210 827185 BAM5 (BETA-AMYLASE 5) cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems. O.I. C.G. H.G.
20.8 99.6 14.1 At4g29610 829082 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA O.I. C.G. H.G.
20.6 99.6 17.2 At4g03610 825661 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFA O.I. C.G. H.G.
19.7 99.6 39.7 At4g02850 828160 phenazine biosynthesis PhzC/PhzF family protein F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA O.I. C.G. H.G.
18.4 99.5 16.5 At4g29570 829078 cytidine deaminase, putative / cytidine aminohydrolase, putative F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO O.I. C.G. H.G.
18.3 99.5 55.0 At5g02780 831800 In2-1 protein, putative F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA O.I. C.G. H.G.
18.2 99.5 69.7 At5g53870 835468 plastocyanin-like domain-containing protein F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA O.I. C.G. H.G.
18.2 99.5 14.9 At4g17660 827486 protein kinase, putative F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA O.I. C.G. H.G.
17.5 99.5 80.7 At1g19610 838548 PDF1.4 Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2. O.I. C.G. H.G.
16.6 99.5 136.2 At4g12500 826862 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:unknown;POBMVFA O.I. C.G. H.G.
16.6 99.5 11.7 At1g11300 837672 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA O.I. C.G. H.G.
16.6 99.5 11.2 At1g77960 844131 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV O.I. C.G. H.G.
16.3 99.5 44.5 At5g46230 834665 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
16.2 99.5 52.7 At5g60630 836184 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO O.I. C.G. H.G.
16.0 99.5 90.6 At1g65500 842862 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
15.9 99.5 58.5 At2g37770 818354 aldo/keto reductase family protein F:oxidoreductase activity;P:oxidation reduction;C:unknown;BOMFPA O.I. C.G. H.G.
15.9 99.5 7.9 At5g33340 833310 CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1) Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation. O.I. C.G. H.G.
15.6 99.5 137.5 At2g18660 816381 EXLB3 (EXPANSIN-LIKE B3 PRECURSOR) Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein. O.I. C.G. H.G.
15.4 99.5 41.8 At5g15190 831371 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. C.G. H.G.
15.3 99.4 49.5 At5g50260 835091 cysteine proteinase, putative F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF O.I. C.G. H.G.
14.7 99.4 63.9 At1g22360 838843 AtUGT85A2 (UDP-glucosyl transferase 85A2) F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF O.I. C.G. H.G.
14.2 99.4 74.3 At2g29350 817484 SAG13 senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase O.I. C.G. H.G.
14.1 99.4 16.0 At2g40200 818611 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB O.I. C.G. H.G.
14.0 99.4 66.2 At1g10585 837600 transcription factor F:transcription factor activity;P:regulation of transcription;C:nucleus;P O.I. C.G. H.G.
13.6 99.4 91.3 At1g69880 843324 ATH8 (thioredoxin H-type 8) F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV O.I. C.G. H.G.
13.6 99.4 35.7 At1g21010 838695 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
13.5 99.4 37.5 At3g20100 821553 CYP705A19 member of CYP705A O.I. C.G. H.G.
13.3 99.4 14.5 At5g12930 831133 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF O.I. C.G. H.G.
13.0 99.4 16.6 At3g49300 824091 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBV O.I. C.G. H.G.
12.9 99.3 108.6 At4g37520 829907 peroxidase 50 (PER50) (P50) (PRXR2) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM O.I. C.G. H.G.
12.8 99.3 11.3 At2g32660 817826 AtRLP22 (Receptor Like Protein 22) F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV O.I. C.G. H.G.
12.7 99.3 51.0 At3g62820 825457 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P O.I. C.G. H.G.
12.5 99.3 53.4 At1g32940 840188 SBT3.5 F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM O.I. C.G. H.G.
12.1 99.3 55.6 At1g21525 3766777 - pseudogene of unknown protein O.I. C.G. H.G.
11.8 99.3 52.2 At5g17650 831631 glycine/proline-rich protein F:unknown;P:unknown;C:unknown;MFPBOVA O.I. C.G. H.G.
11.7 99.3 6.8 At2g20070 816526 - F:molecular_function unknown;P:unknown;C:endomembrane system;P O.I. C.G. H.G.
11.5 99.3 14.4 At1g16530 838223 ASL9 (ASYMMETRIC LEAVES 2 LIKE 9) F:unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.9 99.2 112.9 At5g26260 832695 meprin and TRAF homology domain-containing protein / MATH domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF O.I. C.G. H.G.
10.9 99.2 98.3 At5g39730 833969 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related F:molecular_function unknown;P:response to salt stress;C:plasma membrane;POBFA O.I. C.G. H.G.
10.7 99.2 187.5 At4g12480 826860 pEARLI 1 a putative lipid transfer protein, vernalization-responsive and cold-induced O.I. C.G. H.G.
10.6 99.2 59.1 At4g00490 827959 BAM2 (BETA-AMYLASE 2) Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype. O.I. C.G. H.G.
10.5 99.2 68.6 At3g51430 824306 YLS2 strictosidine synthase-like protein O.I. C.G. H.G.
10.5 99.2 19.0 At3g53210 824487 nodulin MtN21 family protein F:unknown;P:unknown;C:membrane;OBPAM O.I. C.G. H.G.
10.4 99.2 40.9 At3g50900 824254 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
10.4 99.2 11.2 At4g13990 827035 exostosin family protein F:catalytic activity;P:biological_process unknown;C:cell wall, membrane;POM O.I. C.G. H.G.
10.3 99.2 39.2 At5g66440 836776 unknown protein F:molecular_function unknown;P:unknown;C:unknown;POM O.I. C.G. H.G.
10.3 99.2 33.5 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I O.I. C.G. H.G.
10.2 99.2 45.3 At5g06720 830561 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV O.I. C.G. H.G.
10.2 99.2 29.1 At5g42860 834297 unknown protein F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB O.I. C.G. H.G.
10.1 99.2 77.1 At1g19600 838547 pfkB-type carbohydrate kinase family protein F:kinase activity;P:D-ribose catabolic process;C:cellular_component unknown;BOMPAF O.I. C.G. H.G.
10.1 99.2 67.5 At5g21105 832235 L-ascorbate oxidase/ copper ion binding / oxidoreductase F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOA O.I. C.G. H.G.
10.1 99.2 14.7 At1g01010 839580 ANAC001 (Arabidopsis NAC domain containing protein 1) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P O.I. C.G. H.G.
9.9 99.1 188.2 At4g12490 826861 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA O.I. C.G. H.G.
9.9 99.1 92.5 At5g06870 830578 PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2) Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate. O.I. C.G. H.G.
9.6 99.1 92.4 At2g03760 814903 ST Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens. O.I. C.G. H.G.
9.6 99.1 20.7 At5g06330 830521 hairpin-responsive protein, putative (HIN1) F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P O.I. C.G. H.G.
9.5 99.1 43.8 At2g29490 817498 ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1) Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002). O.I. C.G. H.G.
9.5 99.1 15.6 At4g37320 829887 CYP81D5 member of CYP81D O.I. C.G. H.G.
9.4 99.1 50.2 At1g63090 842612 AtPP2-A11 (Phloem protein 2-A11) F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P O.I. C.G. H.G.
9.4 99.1 10.7 At2g33080 817870 AtRLP28 (Receptor Like Protein 28) F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVA O.I. C.G. H.G.
9.4 99.1 4.0 At3g60940 825265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO O.I. C.G. H.G.
9.3 99.1 55.4 At5g22460 832307 esterase/lipase/thioesterase family protein F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF O.I. C.G. H.G.
9.1 99.1 242.7 At4g11650 826770 ATOSM34 (osmotin 34) osmotin-like protein O.I. C.G. H.G.
9.1 99.1 110.0 At4g37990 829955 ELI3-2 (ELICITOR-ACTIVATED GENE 3-2) Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity. O.I. C.G. H.G.
8.9 99.0 134.7 At5g48485 834904 DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1) encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica. O.I. C.G. H.G.
8.9 99.0 53.0 At5g13330 831174 Rap2.6L (related to AP2 6L) encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily. O.I. C.G. H.G.
8.7 99.0 23.7 At2g40670 818662 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) response regulator 16 O.I. C.G. H.G.

Std2 GX	%ile	Std GX	Gene ID	Repr. ID	Gene name	Functional description	O.I.	C.G.	H.G.
646.9	100.0	138.4	At2g18590	816374	carbohydrate transmembrane transporter/ sugar:hydrogen symporter	F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:biological_process unknown;C:endomembrane system, membrane;BOMFPAV	O.I.	C.G.	H.G.
131.8	99.9	121.1	At5g50915	835164	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:response to gibberellin stimulus;C:nucleus;PFM	O.I.	C.G.	H.G.
78.7	99.9	38.4	At1g58170	842184	disease resistance-responsive protein-related / dirigent protein-related	F:molecular_function unknown;P:N-terminal protein myristoylation, lignan biosynthetic process, defense response;C:endomembrane system;P	O.I.	C.G.	H.G.
70.1	99.9	298.9	At2g02990	814828	RNS1 (RIBONUCLEASE 1)	member of the ribonuclease T2 family, responds to inorganic phosphate starvation, and inhibits production of anthocyanin. Also involved in wound-induced signaling independent of jasmonic acid.	O.I.	C.G.	H.G.
69.3	99.9	98.8	At2g27070	817249	ARR13 (ARABIDOPSIS RESPONSE REGULATOR 13)	member of Response Regulator: B- Type	O.I.	C.G.	H.G.
58.6	99.8	105.8	At3g48100	823965	ARR5 (ARABIDOPSIS RESPONSE REGULATOR 5)	Encodes a transcription repressor that mediates a negative feedback loop in cytokinin signalling. ARR5 expression is upregulated by Class I KNOX genes. Arr5 protein is stabilized by cytokinin in a two-component phosphorelay.	O.I.	C.G.	H.G.
57.8	99.8	81.8	At4g25000	828603	AMY1 (ALPHA-AMYLASE-LIKE)	Predicted to be secreted protein based on signalP prediction. Involved in starch mobilization. Mutants are defective in alpha-amylase activity. (Note: AMY1 has been found in the literature to be referred to as AMY3, which is not to be confused with AMY3/At1g69830).	O.I.	C.G.	H.G.
57.8	99.8	32.7	At1g02940	839479	GSTF5 (GLUTATHIONE S-TRANSFERASE (CLASS PHI) 5)	Encodes glutathione transferase belonging to the phi class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
36.9	99.7	48.3	At1g70560	843393	TAA1 (TRYPTOPHAN AMINOTRANSFERASE OF ARABIDOPSIS 1)	TAA1 is involved in the shade-induced production of indole-3-pyruvate (IPA), a precursor to IAA, a biologically active auxin. It is also involved in regulating many aspects of plant growth and development from embryogenesis to flower formation and plays a role in ethylene-mediated signaling. This enzyme can catalyze the formation of IPA from L-tryptophan. Though L-Trp is expected to be the preferred substrate in vivo, TAA1 also acts as an aminotransferase using L-Phe, L-Tyr, L-Leu, L-Ala, L-Met, and L-Gln.	O.I.	C.G.	H.G.
30.3	99.7	41.0	At1g71140	843454	MATE efflux family protein	F:drug transporter activity, antiporter activity, transporter activity;P:multidrug transport;C:plasma membrane, membrane;BOPFMA	O.I.	C.G.	H.G.
29.2	99.7	16.4	At4g26460	828752	-	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
27.3	99.7	80.8	At4g01430	826685	nodulin MtN21 family protein	F:unknown;P:unknown;C:endomembrane system, membrane;PBOAMF	O.I.	C.G.	H.G.
25.7	99.7	24.2	At3g19350	821469	MPC (MATERNALLY EXPRESSED PAB C-TERMINAL)	Encodes a the C-terminal domain of poly(A) binding proteins. MPC is imprinted such that only the maternal allele is expressed in the endosperm. MPC is silenced by the action of MET1 and its expression is promoted by DEM.	O.I.	C.G.	H.G.
25.1	99.6	49.7	At1g14130	837972	2-oxoglutarate-dependent dioxygenase, putative	F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:nucleus;POBFM	O.I.	C.G.	H.G.
22.9	99.6	251.6	At2g43510	818952	ATTI1	Member of the defensin-like (DEFL) family. Encodes putative trypsin inhibitor protein which may function in defense against herbivory.	O.I.	C.G.	H.G.
22.6	99.6	148.2	At4g15210	827185	BAM5 (BETA-AMYLASE 5)	cytosolic beta-amylase expressed in rosette leaves and inducible by sugar. RAM1 mutants have reduced beta amylase in leaves and stems.	O.I.	C.G.	H.G.
20.8	99.6	14.1	At4g29610	829082	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, zinc ion binding, catalytic activity;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BOMPFA	O.I.	C.G.	H.G.
20.6	99.6	17.2	At4g03610	825661	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OBPFA	O.I.	C.G.	H.G.
19.7	99.6	39.7	At4g02850	828160	phenazine biosynthesis PhzC/PhzF family protein	F:catalytic activity;P:biosynthetic process;C:endomembrane system;BOMFPA	O.I.	C.G.	H.G.
18.4	99.5	16.5	At4g29570	829078	cytidine deaminase, putative / cytidine aminohydrolase, putative	F:hydrolase activity, cytidine deaminase activity, catalytic activity, zinc ion binding;P:cytidine deamination, cytidine metabolic process;C:cellular_component unknown;BPO	O.I.	C.G.	H.G.
18.3	99.5	55.0	At5g02780	831800	In2-1 protein, putative	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBMOFA	O.I.	C.G.	H.G.
18.2	99.5	69.7	At5g53870	835468	plastocyanin-like domain-containing protein	F:electron carrier activity, copper ion binding;P:unknown;C:plasma membrane, anchored to membrane;MFOBPVA	O.I.	C.G.	H.G.
18.2	99.5	14.9	At4g17660	827486	protein kinase, putative	F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA	O.I.	C.G.	H.G.
17.5	99.5	80.7	At1g19610	838548	PDF1.4	Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.	O.I.	C.G.	H.G.
16.6	99.5	136.2	At4g12500	826862	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:lipid transport;C:unknown;POBMVFA	O.I.	C.G.	H.G.
16.6	99.5	11.7	At1g11300	837672	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	F:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVA	O.I.	C.G.	H.G.
16.6	99.5	11.2	At1g77960	844131	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBV	O.I.	C.G.	H.G.
16.3	99.5	44.5	At5g46230	834665	unknown protein	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
16.2	99.5	52.7	At5g60630	836184	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO	O.I.	C.G.	H.G.
16.0	99.5	90.6	At1g65500	842862	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
15.9	99.5	58.5	At2g37770	818354	aldo/keto reductase family protein	F:oxidoreductase activity;P:oxidation reduction;C:unknown;BOMFPA	O.I.	C.G.	H.G.
15.9	99.5	7.9	At5g33340	833310	CDR1 (CONSTITUTIVE DISEASE RESISTANCE 1)	Encodes a protein with aspartic protease activity (also known as aspartate-type endopeptidase activity). Overexpression of the gene was shown to lead to salicylic acid (SA)-mediated disease resistance upon exposure to the pathogen Pseudomonas syringae. Moreover, overexpression of this gene led to the upregulation of two pathogenesis-related genes PR1 and PR2. This upregulation was no longer observed in transgenic lines expressing the bacterial NahG gene encoding a hydroxylase suppressing SA accumulation.	O.I.	C.G.	H.G.
15.6	99.5	137.5	At2g18660	816381	EXLB3 (EXPANSIN-LIKE B3 PRECURSOR)	Encodes PNP-A (Plant Natriuretic Peptide A). PNPs are a class of systemically mobile molecules distantly related to expansins; their biological role has remained elusive. PNP-A contains a signal peptide domain and is secreted into the extracellular space. Co-expression analyses using microarray data suggest that PNP-A may function as a component of plant defence response and SAR in particular, and could be classified as a newly identified PR protein.	O.I.	C.G.	H.G.
15.4	99.5	41.8	At5g15190	831371	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P	O.I.	C.G.	H.G.
15.3	99.4	49.5	At5g50260	835091	cysteine proteinase, putative	F:cysteine-type endopeptidase activity, cysteine-type peptidase activity;P:proteolysis;C:endomembrane system;MOPVBAF	O.I.	C.G.	H.G.
14.7	99.4	63.9	At1g22360	838843	AtUGT85A2 (UDP-glucosyl transferase 85A2)	F:UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups, glucuronosyltransferase activity;P:metabolic process;C:cellular_component unknown;PMVBOF	O.I.	C.G.	H.G.
14.2	99.4	74.3	At2g29350	817484	SAG13	senescence-associated gene SAG13 encoding a short-chain alcohol dehydrogenase	O.I.	C.G.	H.G.
14.1	99.4	16.0	At2g40200	818611	basic helix-loop-helix (bHLH) family protein	F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PMOFB	O.I.	C.G.	H.G.
14.0	99.4	66.2	At1g10585	837600	transcription factor	F:transcription factor activity;P:regulation of transcription;C:nucleus;P	O.I.	C.G.	H.G.
13.6	99.4	91.3	At1g69880	843324	ATH8 (thioredoxin H-type 8)	F:unknown;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;BOMPFAV	O.I.	C.G.	H.G.
13.6	99.4	35.7	At1g21010	838695	unknown protein	F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
13.5	99.4	37.5	At3g20100	821553	CYP705A19	member of CYP705A	O.I.	C.G.	H.G.
13.3	99.4	14.5	At5g12930	831133	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOABF	O.I.	C.G.	H.G.
13.0	99.4	16.6	At3g49300	824091	proline-rich family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PMOFBV	O.I.	C.G.	H.G.
12.9	99.3	108.6	At4g37520	829907	peroxidase 50 (PER50) (P50) (PRXR2)	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:cytoplasm;PFOM	O.I.	C.G.	H.G.
12.8	99.3	11.3	At2g32660	817826	AtRLP22 (Receptor Like Protein 22)	F:protein binding, kinase activity;P:signal transduction, defense response;C:cellular_component unknown;PMOBFAV	O.I.	C.G.	H.G.
12.7	99.3	51.0	At3g62820	825457	invertase/pectin methylesterase inhibitor family protein	F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
12.5	99.3	53.4	At1g32940	840188	SBT3.5	F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:apoplast;BPOAFM	O.I.	C.G.	H.G.
12.1	99.3	55.6	At1g21525	3766777	-	pseudogene of unknown protein	O.I.	C.G.	H.G.
11.8	99.3	52.2	At5g17650	831631	glycine/proline-rich protein	F:unknown;P:unknown;C:unknown;MFPBOVA	O.I.	C.G.	H.G.
11.7	99.3	6.8	At2g20070	816526	-	F:molecular_function unknown;P:unknown;C:endomembrane system;P	O.I.	C.G.	H.G.
11.5	99.3	14.4	At1g16530	838223	ASL9 (ASYMMETRIC LEAVES 2 LIKE 9)	F:unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.9	99.2	112.9	At5g26260	832695	meprin and TRAF homology domain-containing protein / MATH domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POF	O.I.	C.G.	H.G.
10.9	99.2	98.3	At5g39730	833969	avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related	F:molecular_function unknown;P:response to salt stress;C:plasma membrane;POBFA	O.I.	C.G.	H.G.
10.7	99.2	187.5	At4g12480	826860	pEARLI 1	a putative lipid transfer protein, vernalization-responsive and cold-induced	O.I.	C.G.	H.G.
10.6	99.2	59.1	At4g00490	827959	BAM2 (BETA-AMYLASE 2)	Encodes a chloroplast beta-amylase. The enzyme activity is very weak compared to BAM1 and BAM3. Mutant of BAM2 has no visible phenotype.	O.I.	C.G.	H.G.
10.5	99.2	68.6	At3g51430	824306	YLS2	strictosidine synthase-like protein	O.I.	C.G.	H.G.
10.5	99.2	19.0	At3g53210	824487	nodulin MtN21 family protein	F:unknown;P:unknown;C:membrane;OBPAM	O.I.	C.G.	H.G.
10.4	99.2	40.9	At3g50900	824254	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
10.4	99.2	11.2	At4g13990	827035	exostosin family protein	F:catalytic activity;P:biological_process unknown;C:cell wall, membrane;POM	O.I.	C.G.	H.G.
10.3	99.2	39.2	At5g66440	836776	unknown protein	F:molecular_function unknown;P:unknown;C:unknown;POM	O.I.	C.G.	H.G.
10.3	99.2	33.5	At3g01970	821270	WRKY45	member of WRKY Transcription Factor; Group I	O.I.	C.G.	H.G.
10.2	99.2	45.3	At5g06720	830561	peroxidase, putative	F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMV	O.I.	C.G.	H.G.
10.2	99.2	29.1	At5g42860	834297	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:plasma membrane;POFMB	O.I.	C.G.	H.G.
10.1	99.2	77.1	At1g19600	838547	pfkB-type carbohydrate kinase family protein	F:kinase activity;P:D-ribose catabolic process;C:cellular_component unknown;BOMPAF	O.I.	C.G.	H.G.
10.1	99.2	67.5	At5g21105	832235	L-ascorbate oxidase/ copper ion binding / oxidoreductase	F:oxidoreductase activity, L-ascorbate oxidase activity, copper ion binding;P:oxidation reduction;C:cell wall;BFPMOA	O.I.	C.G.	H.G.
10.1	99.2	14.7	At1g01010	839580	ANAC001 (Arabidopsis NAC domain containing protein 1)	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.9	99.1	188.2	At4g12490	826861	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	F:lipid binding;P:defense response to fungus, lipid transport;C:unknown;PBOMVFA	O.I.	C.G.	H.G.
9.9	99.1	92.5	At5g06870	830578	PGIP2 (POLYGALACTURONASE INHIBITING PROTEIN 2)	Encodes a polygalacturonase inhibiting protein involved in plant defense response. PGIPs inhibit the activity of pectin degrading enzymes such as those produced by fungal pathogens. PGIP2 is induced by fungal infection and methyl jasmonate.	O.I.	C.G.	H.G.
9.6	99.1	92.4	At2g03760	814903	ST	Encodes a brassinosteroid sulfotransferase. In vitro experiements show that this enzyme has a preference for 24-epibrassinosteroids, particularly 24-epicathasterone, but does not act on castasterone and brassinolide. It is differentially expressed during development, being more abundant in young seedlings and actively growing cell cultures. Expression is induced in response to salicylic acid and methyl jasmonate and bacterial pathogens.	O.I.	C.G.	H.G.
9.6	99.1	20.7	At5g06330	830521	hairpin-responsive protein, putative (HIN1)	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.5	99.1	43.8	At2g29490	817498	ATGSTU1 (GLUTATHIONE S-TRANSFERASE TAU 1)	Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).	O.I.	C.G.	H.G.
9.5	99.1	15.6	At4g37320	829887	CYP81D5	member of CYP81D	O.I.	C.G.	H.G.
9.4	99.1	50.2	At1g63090	842612	AtPP2-A11 (Phloem protein 2-A11)	F:carbohydrate binding;P:N-terminal protein myristoylation;C:cellular_component unknown;P	O.I.	C.G.	H.G.
9.4	99.1	10.7	At2g33080	817870	AtRLP28 (Receptor Like Protein 28)	F:protein binding;P:signal transduction;C:endomembrane system;PMOBFVA	O.I.	C.G.	H.G.
9.4	99.1	4.0	At3g60940	825265	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFMO	O.I.	C.G.	H.G.
9.3	99.1	55.4	At5g22460	832307	esterase/lipase/thioesterase family protein	F:catalytic activity;P:biological_process unknown;C:cell wall, vacuole, plant-type cell wall;BPOF	O.I.	C.G.	H.G.
9.1	99.1	242.7	At4g11650	826770	ATOSM34 (osmotin 34)	osmotin-like protein	O.I.	C.G.	H.G.
9.1	99.1	110.0	At4g37990	829955	ELI3-2 (ELICITOR-ACTIVATED GENE 3-2)	Encodes an aromatic alcohol:NADP+ oxidoreductase whose mRNA levels are increased in response to treatment with a variety of phytopathogenic bacteria. Though similar to mannitol dehydrogenases, this enzyme does not have mannitol dehydrogenase activity.	O.I.	C.G.	H.G.
8.9	99.0	134.7	At5g48485	834904	DIR1 (DEFECTIVE IN INDUCED RESISTANCE 1)	encodes a putative apoplastic lipid transfer protein that is involved in systemic acquired resistance. Mutants in this gene exhibit wild-type local resistance to avirulent and virulent Pseudomonas syringae, but pathogenesis-related gene expression is abolished in uninoculated distant leaves and fail to develop SAR to virulent Pseudomonas or Peronospora parasitica.	O.I.	C.G.	H.G.
8.9	99.0	53.0	At5g13330	831174	Rap2.6L (related to AP2 6L)	encodes a member of the ERF (ethylene response factor) subfamily B-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 7 members in this subfamily.	O.I.	C.G.	H.G.
8.7	99.0	23.7	At2g40670	818662	ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16)	response regulator 16	O.I.	C.G.	H.G.

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GSM ID	GSM133300
Assay name	NO.25
GSE experiment	GSE5699: AtGenExpress: ARR21C overexpression

Microarray experiments to specifically-expressed genes

GSM ID GSM133300 Assay name NO.25 GSE experiment GSE5699: AtGenExpress: ARR21C overexpression

GSM ID GSM133300

Assay name NO.25

GSE experiment GSE5699: AtGenExpress: ARR21C overexpression