Microarray experiments to specifically-expressed genes

GSM ID GSM133272
Assay name RIKEN-GODA7B-6
GSE experiment GSE5696: AtGenExpress: Effect of brassinosteroids in seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
104.799.955.4At4g13390826970proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
52.899.8178.7At5g06640830552proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
44.399.854.8At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
41.499.892.0At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.O.I.C.G.H.G.
40.899.819.4At4g26460828752-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
38.099.880.1At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOO.I.C.G.H.G.
37.399.7162.3At5g06630830551proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
33.499.722.8At2g25240817062serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
32.699.730.4At4g28850829006xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
32.299.7172.6At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
30.799.7213.8At3g54590824624ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)Encodes a hydroxyproline-rich glycoprotein.O.I.C.G.H.G.
30.299.781.9At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PO.I.C.G.H.G.
27.899.770.6At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
26.899.756.5At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
26.899.751.7At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
26.099.766.1At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
25.899.782.6At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
23.399.672.0At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
22.699.615.4At3g60280825199UCC3 (UCLACYANIN 3)Encodes blue copper-binding protein III.O.I.C.G.H.G.
22.399.678.5At4g37450829900AGP18 (ARABINOGALACTAN PROTEIN 18)AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.O.I.C.G.H.G.
21.999.6159.1At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
21.599.618.8At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
21.499.6171.7At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.699.641.2At3g16660820918unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMOO.I.C.G.H.G.
19.899.6157.1At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinO.I.C.G.H.G.
18.799.525.3At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)O.I.C.G.H.G.
18.699.520.2At5g19800832100hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVAO.I.C.G.H.G.
18.499.573.1At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
17.899.571.2At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
17.699.5103.6At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.O.I.C.G.H.G.
17.399.524.8At5g04230830302PAL3 (PHENYL ALANINE AMMONIA-LYASE 3)Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genesO.I.C.G.H.G.
17.099.5171.0At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
17.099.5104.9At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
16.599.525.6At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
16.499.5172.1At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
16.199.5119.2At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
16.099.558.3At4g39840830143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAO.I.C.G.H.G.
15.099.4113.8At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
14.999.4100.0At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
14.799.411.5At3g59340825103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAO.I.C.G.H.G.
14.499.4136.4At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
14.399.439.4At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
13.199.420.7At4g25220828625transporter, putativeF:transporter activity;P:transport;C:unknown;BOFMAPO.I.C.G.H.G.
13.099.452.4At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
12.999.3128.6At5g53450835426ORG1 (OBP3-responsive gene 1)F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBO.I.C.G.H.G.
12.899.325.3At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
12.799.328.0At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
12.799.324.5At2g23130816845AGP17 (ARABINOGALACTAN PROTEIN 17)AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.O.I.C.G.H.G.
12.399.357.0At3g28200822446peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
12.399.355.8At1g12500837807phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOBAO.I.C.G.H.G.
12.099.344.9At1g61100842403disease resistance protein (TIR class), putativeF:unknown;P:defense response;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
12.099.312.6At2g43150818917proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBFOVAO.I.C.G.H.G.
11.999.3181.5At4g33030829440SQD1involved in sulfolipid biosynthesisO.I.C.G.H.G.
11.699.321.1At5g43745834395phosphotransferase-relatedF:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.
11.599.331.6At1g73830843719BEE3 (BR ENHANCED EXPRESSION 3)F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMBOO.I.C.G.H.G.
11.499.361.2At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMO.I.C.G.H.G.
11.499.341.2At1g79720844311aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOBO.I.C.G.H.G.
11.399.386.2At4g05390825887ATRFNR1 (ROOT FNR 1)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.O.I.C.G.H.G.
11.299.2178.1At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
11.099.230.4At1g47210841124cyclin family proteinF:cyclin-dependent protein kinase activity;P:regulation of cell cycle;C:nucleus, cytoplasm;MPFOVO.I.C.G.H.G.
11.099.225.2At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
11.099.210.1At5g61650836287CYCP4The P-type cyclins (CYCPs) share a conserved central region of 100 amino acids ('cyclin box') displaying homology to the corresponding region of the PHO80 cyclin from Saccharomyces cerevisiae and the related G1 cyclins from Trypanosoma cruzi and T. brucei.O.I.C.G.H.G.
10.999.221.1At2g31730817730ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, response to gibberellin stimulus;C:nucleus;PO.I.C.G.H.G.
10.899.279.6At1g01320839293tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
10.899.224.6At5g52900835367unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
10.799.284.4At1g64980842806unknown proteinF:unknown;P:unknown;C:cellular_component unknown;OBPO.I.C.G.H.G.
10.599.2173.1At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
10.599.261.9At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPO.I.C.G.H.G.
10.499.228.3At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAO.I.C.G.H.G.
10.399.212.8At2g05810815132armadillo/beta-catenin repeat family proteinF:binding;P:unknown;C:cellular_component unknown;PMFOO.I.C.G.H.G.
10.299.2155.0At2g46505819261SDH4Encodes succinate dehydrogenase ,a component of mitochondrial respiratory complex II. Nuclear encoded gene which is imported into the mitochondrion.O.I.C.G.H.G.
10.299.295.4At2g19800816499MIOX2 (MYO-INOSITOL OXYGENASE 2)Encodes a myo-inositol oxygenase family gene.O.I.C.G.H.G.
10.299.234.0At3g08600820007unknown proteinF:molecular_function unknown;P:biological_process unknown;C:plasma membrane;PBO.I.C.G.H.G.
10.199.2175.3At1g6000084229429 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPOFBAO.I.C.G.H.G.
10.099.220.8At1g18400838421BEE1 (BR Enhanced Expression 1)F:transcription factor activity;P:regulation of transcription;C:nucleus;PFMOO.I.C.G.H.G.
9.899.1203.6At1g63940842697monodehydroascorbate reductase, putativeF:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAPO.I.C.G.H.G.
9.699.140.9At3g49960824158peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
9.599.166.1At1g11545837698xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
9.499.139.6At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
9.499.122.9At3g47640823918basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus, chloroplast;PMOO.I.C.G.H.G.
9.399.159.8At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.O.I.C.G.H.G.
9.399.146.7At3g06770819862glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family proteinF:polygalacturonase activity;P:response to cyclopentenone, carbohydrate metabolic process;C:unknown;PBFOMAO.I.C.G.H.G.
9.299.145.1At1g64640842772plastocyanin-like domain-containing proteinF:electron carrier activity, copper ion binding;P:unknown;C:anchored to membrane;PO.I.C.G.H.G.
9.299.124.9At5g19100832030extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
9.299.112.3At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
9.199.119.0At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
9.199.17.3At2g42960818898protein kinase family proteinF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
8.999.066.8At5g03540831809ATEXO70A1 (exocyst subunit EXO70 family protein A1)AtEXO70A1 is a member of EXO70 gene family, putative exocyst subunits, conserved in land plants. Arabidopsis thaliana contains 23 putative EXO70 genes, which can be classified into nine clusters on the phylogenetic treeO.I.C.G.H.G.
8.999.016.0At3g60330825204AHA7 (Arabidopsis H(+)-ATPase 7)F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAVO.I.C.G.H.G.
8.999.03.2At1g60320842327Toll-Interleukin-Resistance (TIR) domain-containing proteinF:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:intrinsic to membrane;PBO.I.C.G.H.G.
8.899.0171.9At1g54000841838myrosinase-associated protein, putativeF:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:vacuolar membrane, plasma membrane, vacuole, plant-type cell wall, plant-type vacuole;PBOFMO.I.C.G.H.G.
8.899.046.2At1g33240840218AT-GTL1 (GT2-LIKE 1)Encodes a plant transcriptional activator that contains two separate, but similar, trihelix DNA-binding domains, similar to GT-2. Gene is expressed in all aerial parts of the plant, with higher level of expression in siliques. At-GTL2 was thought to be a duplicated copy of this gene but is likely to be a cloning artefact, the result of a chimeric clone.O.I.C.G.H.G.
8.899.037.6At1g73110843642ribulose bisphosphate carboxylase/oxygenase activase, putative / RuBisCO activase, putativeF:ATPase activity, ATP binding;P:unknown;C:chloroplast thylakoid membrane, chloroplast;PBFOAMO.I.C.G.H.G.
8.799.051.8At1g23090838917AST91 (SULFATE TRANSPORTER 91)Encodes AST91 mRNA for sulfate transporter.O.I.C.G.H.G.
8.699.058.7At1g21910838793AP2 domain-containing transcription factor family proteinencodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 15 members in this subfamily including RAP2.1, RAP2.9 and RAP2.10.O.I.C.G.H.G.
8.699.09.0At3g44370823562bindingF:binding;P:protein insertion into membrane;C:mitochondrion;BOMFPAO.I.C.G.H.G.



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