Microarray experiments to specifically-expressed genes

GSM ID GSM133269
Assay name RIKEN-GODA6A-6
GSE experiment GSE5696: AtGenExpress: Effect of brassinosteroids in seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
91.199.9136.6At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.O.I.C.G.H.G.
71.399.944.9At4g28850829006xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
70.499.945.4At4g13390826970proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
60.299.8190.9At5g06640830552proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
55.099.858.2At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
50.599.8188.9At5g06630830551proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
47.399.868.7At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
43.499.8200.4At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
41.499.820.9At3g60280825199UCC3 (UCLACYANIN 3)Encodes blue copper-binding protein III.O.I.C.G.H.G.
38.599.880.7At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOO.I.C.G.H.G.
38.099.846.8At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
35.199.7146.5At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.O.I.C.G.H.G.
33.999.720.1At3g01730821089unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
33.499.7214.8At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
31.999.733.1At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)O.I.C.G.H.G.
30.999.731.7At4g25220828625transporter, putativeF:transporter activity;P:transport;C:unknown;BOFMAPO.I.C.G.H.G.
27.999.724.8At5g19800832100hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVAO.I.C.G.H.G.
27.499.7184.6At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinO.I.C.G.H.G.
26.099.776.0At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PO.I.C.G.H.G.
25.199.6149.1At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
23.999.6165.9At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
23.799.6187.9At3g54590824624ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)Encodes a hydroxyproline-rich glycoprotein.O.I.C.G.H.G.
23.699.6126.0At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
22.899.633.9At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
21.899.618.4At2g25240817062serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
21.699.616.5At2g29740817524UGT71C2 (UDP-GLUCOSYL TRANSFERASE 71C2)F:quercetin 3'-O-glucosyltransferase activity, quercetin 3-O-glucosyltransferase activity, quercetin 7-O-glucosyltransferase activity, UDP-glycosyltransferase activity, transferase activity, transferring glycosyl groups;P:metabolic process;C:cellular_component unknown;PMBVOFO.I.C.G.H.G.
21.499.638.1At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
20.499.660.4At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
19.099.552.9At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
18.399.5177.5At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
18.199.569.3At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
18.199.544.5At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
17.599.538.0At3g16660820918unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMOO.I.C.G.H.G.
16.299.552.0At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
15.899.567.8At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
15.799.516.1At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
15.599.523.5At5g04230830302PAL3 (PHENYL ALANINE AMMONIA-LYASE 3)Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genesO.I.C.G.H.G.
15.399.434.4At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAO.I.C.G.H.G.
14.999.442.2At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
14.399.423.9At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
13.099.446.8At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
13.099.411.1At1g30850839969unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
13.099.45.9At1g34540840356CYP94D1member of CYP94DO.I.C.G.H.G.
12.999.360.6At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
12.899.317.7At4g30320829155allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
12.799.3151.9At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
12.499.3279.1At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
12.199.3101.3At5g01210831901transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO.I.C.G.H.G.
11.299.220.0At4g33730829515pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
11.299.211.6At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
10.899.230.7At3g58120824981BZIP61Encodes a member of the BZIP family of transcription factors. Forms heterodimers with the related protein AtbZIP34. Binds to G-boxes in vitro and is localized to the nucleus in onion epidermal cells.O.I.C.G.H.G.
10.699.240.8At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
10.399.288.5At2g41560818754ACA4 (AUTO-INHIBITED CA(2+)-ATPASE, ISOFORM 4)encodes a calmodulin-regulated Ca(2+)-ATPase that improves salt tolerance in yeast. localized to the vacuole.O.I.C.G.H.G.
9.799.149.4At3g14350820655SRF7 (STRUBBELIG-RECEPTOR FAMILY 7)F:protein binding, protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:cytosol, nucleus, plasma membrane;MPOBFVAO.I.C.G.H.G.
9.799.121.4At2g23130816845AGP17 (ARABINOGALACTAN PROTEIN 17)AGP17 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP18 and AGP19, other lysine-rich AGPs. 84% of its proline residues are hydroxylated to hydroproline and its heavy glycosylation accounts for appr. 69% of the molecular weight. The main glycosyl residues are arabinose (30.1%) and galactose (55.1%). Glycosyl linkages are consistent with type II arabinogalactans. AGP17 is predicted to have a glycosylphosphatidylinositol (GPI)anchor and is localized to the plasma membrane and Hechtian strands. It is expressed in young/old leaves, shoots, suspension cultures and flowers.O.I.C.G.H.G.
9.599.111.3At2g42850818885CYP718member of CYP718O.I.C.G.H.G.
9.499.119.4At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
9.299.145.2At2g32270817787ZIP3A member of Zrt- and Irt-related protein (ZIP) family. transcript is induced in response to zinc deficiency in the root. also response to iron deficiency.O.I.C.G.H.G.
9.199.176.9At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
9.199.124.8At5g19100832030extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
9.099.144.9At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
8.999.0159.5At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
8.999.0151.3At3g54400824606aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast, cell wall, chloroplast, plant-type cell wall;PMFOO.I.C.G.H.G.
8.999.095.7At5g24400832511emb2024 (embryo defective 2024)F:6-phosphogluconolactonase activity, catalytic activity;P:embryonic development ending in seed dormancy, carbohydrate metabolic process;C:peroxisome, chloroplast stroma, chloroplast;BOMFPO.I.C.G.H.G.
8.999.012.1At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
8.799.0174.9At4g37800829936xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, cell wall, apoplast;PFBOO.I.C.G.H.G.
8.799.0136.9At3g51550824318FER (FERONIA)Encodes a synergid-expressed, plasma-membrane localized receptor-like kinase that accumulates asymetrically in the synergid membrnane at the filiform apparatus and mediates male-female gametophyte interactions during pollen tube reception.O.I.C.G.H.G.
8.799.022.2At2g41970818797protein kinase, putativeF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAO.I.C.G.H.G.
8.799.017.1At3g08960820048binding / protein transporterF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MFOPO.I.C.G.H.G.
8.699.065.7At3g28040822428leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.



Back to the CoP portal site

Back to the KAGIANA project homepage