Microarray experiments to specifically-expressed genes

GSM ID GSM133268
Assay name RIKEN-GODA5B-6
GSE experiment GSE5696: AtGenExpress: Effect of brassinosteroids in seedlings

Click Gene ID to show a list of GSM assays in which the gene are specifically expressed.

Std2 GX %ile Std GX Gene ID Repr. ID Gene name Functional description O.I. C.G. H.G. Other DB
92.199.951.0At4g28850829006xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, hydrolase activity, hydrolyzing O-glycosyl compounds, xyloglucan:xyloglucosyl transferase activity;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
81.299.948.8At4g13390826970proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
72.099.927.5At3g60280825199UCC3 (UCLACYANIN 3)Encodes blue copper-binding protein III.O.I.C.G.H.G.
61.499.823.7At4g26460828752-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO.I.C.G.H.G.
60.799.8191.7At5g06640830552proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
58.399.899.3At5g57530835857xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBOO.I.C.G.H.G.
57.399.862.4At5g57540835858xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeF:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBOO.I.C.G.H.G.
50.099.870.6At1g34510840353peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
45.299.8204.5At2g24980817037proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
40.699.891.2At1g54970841938ATPRP1 (PROLINE-RICH PROTEIN 1)encodes a proline-rich protein that is specifically expressed in the root.O.I.C.G.H.G.
37.199.7162.0At5g06630830551proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
36.099.723.7At2g25240817062serine-type endopeptidase inhibitorF:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAFO.I.C.G.H.G.
33.799.733.1At4g25220828625transporter, putativeF:transporter activity;P:transport;C:unknown;BOFMAPO.I.C.G.H.G.
31.699.726.4At5g19800832100hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVAO.I.C.G.H.G.
27.999.730.9At2g20520816574FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6)fasciclin-like arabinogalactan-protein 6 (Fla6)O.I.C.G.H.G.
27.499.7201.8At3g54590824624ATHRGP1 (HYDROXYPROLINE-RICH GLYCOPROTEIN)Encodes a hydroxyproline-rich glycoprotein.O.I.C.G.H.G.
26.999.7176.2At4g26010828707peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
26.399.768.6At3g54580824623proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFBPOVAO.I.C.G.H.G.
26.299.720.8At1g203903766766transposable element geneF:unknown;P:unknown;C:unknownO.I.C.G.H.G.
25.899.782.6At4g08410826400proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MFPOBVAO.I.C.G.H.G.
25.299.685.6At5g05500830433pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
25.199.654.7At5g15780831434pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MBPOFVAO.I.C.G.H.G.
25.099.638.0At4g19680827712IRT2encodes an iron transporter whose expression is induced by iron and zinc deficiency. Gene is specifically expressed in the external cell layers of the root subapical zone.O.I.C.G.H.G.
23.999.6120.8At4g25820828687XTR9 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 9)Encodes a xyloglucan endotransglycosylase with a clear preference for non-fucosylated xyloglucan polymer.O.I.C.G.H.G.
23.199.6124.6At5g67400836876peroxidase 73 (PER73) (P73) (PRXR11)F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
22.499.6140.6At1g30870839971cationic peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOMO.I.C.G.H.G.
22.399.661.2At5g35190833473proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MFPOBVAO.I.C.G.H.G.
21.999.6165.1At3g62680825442PRP3 (PROLINE-RICH PROTEIN 3)Proline-rich proteinO.I.C.G.H.G.
21.399.6171.5At4g02270828083pollen Ole e 1 allergen and extensin family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
20.699.6116.3At4g05390825887ATRFNR1 (ROOT FNR 1)Encodes a root-type ferredoxin:NADP(H) oxidoreductase.O.I.C.G.H.G.
20.399.635.3At5g22410832302peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
20.299.667.1At4g40090830172AGP3 (arabinogalactan-protein 3)F:unknown;P:multicellular organismal development;C:endomembrane system;PO.I.C.G.H.G.
19.999.666.5At1g56430842096NAS4 (NICOTIANAMINE SYNTHASE 4)F:nicotianamine synthase activity;P:nicotianamine biosynthetic process;C:cellular_component unknown;PFABOO.I.C.G.H.G.
19.999.631.6At3g10710820240pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMO.I.C.G.H.G.
19.899.6189.2At1g05240839237peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
19.499.614.5At1g27740839667basic helix-loop-helix (bHLH) family proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFOO.I.C.G.H.G.
18.399.5126.0At3g59930825163-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
17.999.538.4At3g16660820918unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMOO.I.C.G.H.G.
17.899.554.4At5g04960830378pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOO.I.C.G.H.G.
17.299.526.2At1g12950837853MATE efflux family proteinF:antiporter activity, drug transporter activity, transporter activity;P:multidrug transport;C:membrane;BOPFMAO.I.C.G.H.G.
15.099.440.4At1g54120841852unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;PO.I.C.G.H.G.
14.899.423.0At5g04230830302PAL3 (PHENYL ALANINE AMMONIA-LYASE 3)Member of Phenylalanine ammonialyase (PAL) gene family.Differs significantly from PAL1 and PAL2 and other sequenced plant PAL genesO.I.C.G.H.G.
14.799.413.3At4g29180829039leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
14.499.423.9At4g34580829610COW1 (CAN OF WORMS1)Encodes COW1 (can of worms1), a phosphatidylinositol transfer protein essential for root hair tip growth. The N-terminus of the COW1 protein is 32% identical to an essential phosphatidylinositol transfer protein (PITP), the yeast Sec14 protein (sec14p) while the C-terminus is 34.5% identical to a late nodulin of Lotus japonicus, Nlj16. Expression of COW1 complements the growth defect associated with Sec14p dysfunction in yeast. GFP fused to the COW1 protein specifically accumulates at the site of root hair outgrowth.O.I.C.G.H.G.
13.999.499.2At1g43800840977acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putativeF:acyl-[acyl-carrier-protein] desaturase activity, oxidoreductase activity, transition metal ion binding;P:fatty acid metabolic process, fatty acid biosynthetic process;C:membrane;PBOMO.I.C.G.H.G.
13.999.490.6At1g01320839293tetratricopeptide repeat (TPR)-containing proteinF:binding;P:unknown;C:cellular_component unknown;MBFOPAVO.I.C.G.H.G.
13.899.461.8At4g37450829900AGP18 (ARABINOGALACTAN PROTEIN 18)AGP18 is a lysine-rich arabinogalactan-protein (AGP) and part of a multi-gene family of glycoproteins with approx. 50 members. It falls into one subclass with AGP17 and AGP19, other lysine-rich AGPs. It is expressed in young leaves, shoots, roots and flowers.O.I.C.G.H.G.
13.899.432.7At4g25790828684allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBVAO.I.C.G.H.G.
13.499.412.7At3g01730821089unknown proteinF:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;PO.I.C.G.H.G.
12.899.3148.3At3g16670820919unknown proteinF:molecular_function unknown;P:response to oxidative stress;C:endomembrane system;PO.I.C.G.H.G.
12.899.37.9At5g43590834379patatin, putativeF:nutrient reservoir activity;P:metabolic process, lipid metabolic process;C:cellular_component unknown;PBOMFVO.I.C.G.H.G.
12.799.3189.6At4g33720829514pathogenesis-related protein, putativeF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
12.799.313.8At1g69240843255MES15 (METHYL ESTERASE 15)Encodes a protein predicted to act as a carboxylesterase. It has similarity to the SABP2 methyl salicylate esterase from tobacco but no enzymatic activity has been identified for this protein.O.I.C.G.H.G.
12.699.3127.5At1g72430843575auxin-responsive protein-relatedF:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO.I.C.G.H.G.
12.599.310.6At3g59340825103unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPAO.I.C.G.H.G.
12.499.342.9At1g79720844311aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis;C:apoplast;PFMOBO.I.C.G.H.G.
12.499.314.3At1g70460843382protein kinase, putativeF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MBOPFVAO.I.C.G.H.G.
12.399.317.3At4g30320829155allergen V5/Tpx-1-related family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system, extracellular region;MPFOBO.I.C.G.H.G.
12.299.343.8At1g62980842601ATEXPA18 (ARABIDOPSIS THALIANA EXPANSIN A18)Alpha-expansin 18. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio)O.I.C.G.H.G.
12.199.328.7At5g19100832030extracellular dermal glycoprotein-related / EDGP-relatedF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PO.I.C.G.H.G.
12.099.3182.6At4g33030829440SQD1involved in sulfolipid biosynthesisO.I.C.G.H.G.
12.099.366.2At2g19940816513N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidoreductase, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor / protein dimerizationF:in 6 functions;P:amino acid metabolic process, response to cadmium ion;C:nucleolus, chloroplast stroma, chloroplast, membrane;BOAFPO.I.C.G.H.G.
11.799.339.1At2g23620816894MES1 (METHYL ESTERASE 1)Encodes a protein shown to have carboxylesterase activity, methyl salicylate esterase activity, methyl jasmonate esterase activity, and methyl IAA esterase activity in vitro. MES1 appears to be involved in MeSA hydrolysis in planta. Expression of MES1 can restore systemic acquired resistance in SAR-deficient tobacco plants. This protein does not act on MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
11.499.385.9At1g23720838982proline-rich extensin-like family proteinF:structural constituent of cell wall;P:plant-type cell wall organization;C:unknown;MBFOPVAO.I.C.G.H.G.
11.399.35.5At1g34540840356CYP94D1member of CYP94DO.I.C.G.H.G.
11.299.281.6At5g19820832102emb2734 (embryo defective 2734)F:lyase activity, binding;P:embryonic development ending in seed dormancy;C:cell wall, phycobilisome;MFOPO.I.C.G.H.G.
10.999.23.3At1g66610842979seven in absentia (SINA) protein, putativeF:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process;C:nucleus;MPOFO.I.C.G.H.G.
10.899.252.1At1g12500837807phosphate translocator-relatedF:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOBAO.I.C.G.H.G.
10.699.242.2At1g61100842403disease resistance protein (TIR class), putativeF:unknown;P:defense response;C:cellular_component unknown;MOFPBVAO.I.C.G.H.G.
10.499.229.6At1g23205838929invertase/pectin methylesterase inhibitor family proteinF:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;PO.I.C.G.H.G.
10.399.2170.8At3g07430819931emb1990 (embryo defective 1990)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast, chloroplast envelope;BOPO.I.C.G.H.G.
10.399.242.4At3g49960824158peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOO.I.C.G.H.G.
10.199.2152.8At3g44990823634XTR8 (XYLOGLUCAN ENDO-TRANSGLYCOSYLASE-RELATED 8)xyloglucan endo-transglycosylaseO.I.C.G.H.G.
9.899.1172.5At1g6000084229429 kDa ribonucleoprotein, chloroplast, putative / RNA-binding protein cp29, putativeF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast;MPOFBAO.I.C.G.H.G.
9.799.179.7At3g50440824208MES10 (METHYL ESTERASE 10)Encodes a protein shown to have methyl jasmonate esterase activity in vitro. This protein does not act on methyl IAA, MeSA, MeGA4, or MEGA9 in vitro.O.I.C.G.H.G.
9.699.1201.2At1g63940842697monodehydroascorbate reductase, putativeF:ATP binding;P:response to cadmium ion, response to cold;C:mitochondrion, stromule, chloroplast stroma, chloroplast;BOMFAPO.I.C.G.H.G.
9.699.160.7At1g23020838910FRO3Encodes a ferric chelate reductase whose transcription is regulated by FIT1. Expressed in the root, shoot, flower and cotyledon.O.I.C.G.H.G.
9.699.145.1At2g32530817814ATCSLB03encodes a gene similar to cellulose synthaseO.I.C.G.H.G.
9.699.145.1At4g39840830143unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OMFBPVAO.I.C.G.H.G.
9.699.137.5At1g24530839068transducin family protein / WD-40 repeat family proteinF:nucleotide binding;P:biological_process unknown;C:plasma membrane, heterotrimeric G-protein complex;MFOBPAO.I.C.G.H.G.
9.599.131.2At5g01590830369unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast, chloroplast envelope;BPOO.I.C.G.H.G.
9.499.179.5At1g24170839030LGT9Encodes a protein with putative galacturonosyltransferase activity.O.I.C.G.H.G.
9.499.121.3At1g33700840261catalytic/ glucosylceramidaseF:catalytic activity, glucosylceramidase activity;P:glucosylceramide catabolic process, sphingolipid metabolic process;C:vacuole;BPMOAO.I.C.G.H.G.
9.399.178.9At2g47590819372PHR2 (photolyase/blue-light receptor 2)photolyase/blue light photoreceptor PHR2 (PHR2) mRNA,O.I.C.G.H.G.
9.399.146.0At4g26500828756CPSUFE (CHLOROPLAST SULFUR E)Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.O.I.C.G.H.G.
9.399.11.9At4g12270826835copper amine oxidase family proteinF:quinone binding, amine oxidase activity, copper ion binding;P:cellular amine metabolic process;C:endomembrane system;FBPOMAO.I.C.G.H.G.
9.199.1138.1At1g21310838728ATEXT3 (EXTENSIN 3)Encodes extensin 3.O.I.C.G.H.G.
9.199.149.1At3g28200822446peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBO.I.C.G.H.G.
9.099.1142.7At5g416708341696-phosphogluconate dehydrogenase family proteinF:in 6 functions;P:response to fructose stimulus, response to cadmium ion, response to sucrose stimulus, response to glucose stimulus;C:mitochondrion, chloroplast;BOMPFAVO.I.C.G.H.G.
9.099.119.1At2g31730817730ethylene-responsive protein, putativeF:transcription factor activity;P:response to ethylene stimulus, response to gibberellin stimulus;C:nucleus;PO.I.C.G.H.G.
8.999.0183.2At4g13890827024EDA36 (EMBRYO SAC DEVELOPMENT ARREST 37)F:pyridoxal phosphate binding, glycine hydroxymethyltransferase activity, catalytic activity;P:glycine metabolic process, polar nucleus fusion, L-serine metabolic process, pollen development;C:cellular_component unknown;OBMPFAVO.I.C.G.H.G.
8.999.0107.0At5g53450835426ORG1 (OBP3-responsive gene 1)F:protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;PMOFBO.I.C.G.H.G.
8.999.06.6At5g01060831916protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;PMOBFVAO.I.C.G.H.G.
8.899.0111.5At2g31670817723-F:molecular_function unknown;P:biological_process unknown;C:peroxisome, chloroplast stroma, chloroplast;PBOFO.I.C.G.H.G.
8.899.066.2At3g28040822428leucine-rich repeat transmembrane protein kinase, putativeF:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;MPOBFVAO.I.C.G.H.G.
8.799.0233.9At3g05730819742-Encodes a defensin-like (DEFL) family protein.O.I.C.G.H.G.
8.799.049.8At1g23030838911armadillo/beta-catenin repeat family protein / U-box domain-containing proteinF:ubiquitin-protein ligase activity, binding;P:response to chitin;C:ubiquitin ligase complex;PMOFBVO.I.C.G.H.G.
8.799.015.8At3g60330825204AHA7 (Arabidopsis H(+)-ATPase 7)F:hydrogen-exporting ATPase activity, phosphorylative mechanism;P:cation transport, metabolic process, ATP biosynthetic process;C:plasma membrane;BMOFPAVO.I.C.G.H.G.
8.699.018.2At5g43745834395phosphotransferase-relatedF:unknown;P:unknown;C:chloroplast, chloroplast envelope;POBO.I.C.G.H.G.



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